XLOC_033894 (aktip)


Basic Information

Item Value
gene id XLOC_033894
gene name aktip
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 36467315 ~ 36484078 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066317
GCGAGTACATTCCGTGCCGTCAGTCAATGGGGAGGGAGGAtcctaaatgttttaaaacgtgtGAAAGTTTAGCCCGCAAATTTTTCGGATGCCACCCAAAAGTGAGCAAGCACACACCCATCTAGAGCTCAATGAGTAATGAACCCATTTTGGAGCATGTCTACAAACGCTGGTCGTAAGagatctGATGGTGAAGAGCAGAGTGGTTCAGGGGAGCAGAGAGCCAGTCCAGCTCGTCCTCCATTTGGTAAGAAGCAACTTCCCTCCATCCCGAAGAATGCCGTCCCCATCACTAAAGCCGCATCACCAGCCTCTTCTACACAATCTGCCAATGGCACACATGCCTCATACGGCCCTTTCTACCTGGAGTACTCACTACTTGCTGAGTTCACATTGGTTATCAAGCAGAAGCTTCCTGGCATCTATGTACAGCCTTCATACAGATCAGCGCTGATGTGGTTTGGTGTGATTTTCATTCGCCATGGTTTGTACCAAGATGGTGTGTTTAAGTTCACCGTCTACATTCCTGATAACTATCCAGATGGAGACTGTCCGAAGGTTGTTTTTGACACTCCAGTTTTCCACCCACTAGTGGACCCAGTTTCTGGTGAGCTTGACGTGAGGAGAGCTTTCACCAAATGGAGACGAAACCACAATCATATCTGGCAGGTGCTTATGTACGCCCGCACAATCTTCTATAAGATCAACACTATGGAGCCGCTCAACCCAGAGGCTGCTGTGCTGTATGACAAAGACATCCAGCTCTTCAAAAGTAAGGTGGTAGACAGTGTCAAGCTATGCAATAGTCACCTGTTTGATCAGCCCAAGATAGATGATCCTTATGCAATAAGCTTCTCCCCGTGGAATCCAGCGGTGCATGAAGAGGCGAAAGAGAAGATGTTTGCACATAAAcgGCGACCTGAGGATTTTAACAAAGGCCTTCCGGTGTCTGGACTTTCCTGGGTGAAG
>TCONS_00066320
GTTAGCGGTGTGTTCAGTATTTGTGTGAGATTATTCGGATAACAGTGTCGTCGGTGGTTTAGTTTACCGCACATGGTTAAAAGCCAGTCCAAATCAAAATGTTTGAAACCCGACAAGTTACCGTGTAGCATGTCTTTAGCCAGGTGACATTATTTGTCGCAGCAAATTTTTCGGATGCCACCCAAAAGTGAGCAAGCACACACCCATCTAGAGCTCAATGAGTAATGAACCCATTTTGGAGCATGTCTACAAACGCTGGTCGTAAGagatctGATGGTGAAGAGCAGAGTGGTTCAGGGGAGCAGAGAGCCAGTCCAGCTCGTCCTCCATTTGGTAAGAAGCAACTTCCCTCCATCCCGAAGAATGCCGTCCCCATCACTAAAGCCGCATCACCAGCCTCTTCTACACAATCTGCCAATGGCACACATGCCTCATACGGCCCTTTCTACCTGGAGTACTCACTACTTGCTGAGTTCACATTGGTTATCAAGCAGAAGCTTCCTGGCATCTATGTACAGCCTTCATACAGATCAGCGCTGATGTGGTTTGGTGTGATTTTCATTCGCCATGGTTTGTACCAAGATGGTGTGTTTAAGTTCACCGTCTACATTCCTGATAACTATCCAGATGGAGACTGTCCGAAGGTTGTTTTTGACACTCCAGTTTTCCACCCACTAGTGGACCCAGTTTCTGGTGAGCTTGACGTGAGGAGAGCTTTCACCAAATGGAGACGAAACCACAATCATATCTGGCAGGTGCTTATGTACGCCCGCACAATCTTCTATAAGATCAACACTATGGAGCCGCTCAACCCAGAGGCTGCTGTGCTGTATGACAAAGACATCCAGCTCTTCAAAAGTAAGGTGGTAGACAGTGTCAAGCTATGCAATAGTCACCTGTTTGATCAGCCCAAGATAGATGATCCTTATGCAATAAGCTTCTCCCCGTGGAATCCAGCGGTGCATGAAGAGGCGAAAGAGAAGATGTTTGCACATAAAGTGAGTGTGTGACGCTCCCCTGACTGCTCCCCACAACCAAGTAAAAACTGGCTTCTTCCTGGTATCTGATGCATGCCTTGTTTTAAAGCATGAGCTTGTGTGTGGAACACTGTTTCCTTTCCTGTTTCCAGTTCTCCTTCTGCTCTTCATAACTcgGCGACCTGAGGATTTTAACAAAGGCCTTCCGGTGTCTGGACTTTCCTGGGTGAAGCCTGGCTCCACTCAGCCTTTCAGCAAAGAGGACAACCCCCTTCAGACGTGAAATTTCAGTGCTTCCGTCTGTCCACCAAAGGGGCGCTATGCTACTGTGGCTGCACCGAACCACACATATATCGAAGTCTGATGCAGTTCTATGAACTTCATCTTCATTCGCAAAACTCTCGCTCAgctttaaagaaaacaaatcattttaaactggtaTAATGGCTTAAGAACCATAGTCCTGTACCTGGTATAGCCCCGAAGACCCTACTCGTTCATTTCAATGCTGATGCTTGAACGCACAGAAGATGGTTCTAGAAAGTACTGTTAATTGCCCATGTTGATGTTTTCAGGCACAACAAACCACCTCGCTCTTGTGTGTAGGTCATGCTCTTCTAAATGATCACTTTGGGTTTCTAACTAATTGTTTTACAGATTTAATATGGTTTCCATTTGGTTTTCCTTTCTCTACAATCTTGCTTAATAGTTGTACTTTCAAACAAACAATCATAAACTGGGACAGAACACCTTGATTTTGCATATTTATAgctttgagtatttttttttttgtaataacctGTGTATGAAAtggttttaaatgtaaattacagAGCAAGACATATACTATTCATTAAGACACTAAGTTAATCCTCATTGTTTAGTAATGTAATTCACTTTTATTGTCCTAATGGTTTGATCTAAAAGGGTTTGATGTGTAAATAGTGCAGCAGTTCGATTAAATCAATGGCCTCTATAGCAGAGTCCATACATCTCATTTATTTATCTAGAAATGTATGATTGTTTAAATTTTAGACATTTTGCTCTTTTACAATaccccctttttttctttttaatgtttattttgggCTGTCAGTGAGAATACTGATTTGAGCCCAGCTGTGTAagtaatgtaatattattttttaaatctgttaaacgcaaataaatgcataaacgGTGAAACTGGTCTGAAATGGTGTTTGCTGGCAGTATCATTTCTGTGGTTTAGACATTTTCAATAAAAGAGATTATTAATGGTGAGAAtctcatgtgtgtgtgcgcgtggaTGAATCACACATTTGTTG
>TCONS_00066318
TAGCGGTGTGTTCAGTATTTGTGTGAGATTATTCGGATAACAGTGTCGTCGGTGGTTTAGTTTACCGCACATGGTTAAAAGCCAGTCCAAATCAAAATGTTTGAAACCCGACAAGTTACCGTGTAGCATGTCTTTAGCCAGGTGACATTATTTGTCGCAGCAAATTTTTCGGATGCCACCCAAAAGTGAGCAAGCACACACCCATCTAGAGCTCAATGAGTAATGAACCCATTTTGGAGCATGTCTACAAACGCTGGTCGTAAGagatctGATGGTGAAGAGCAGAGTGGTTCAGGGGAGCAGAGAGCCAGTCCAGCTCGTCCTCCATTTGGTAAGAAGCAACTTCCCTCCATCCCGAAGAATGCCGTCCCCATCACTAAAGCCGCATCACCAGCCTCTTCTACACAATCTGCCAATGGCACACATGCCTCATACGGCCCTTTCTACCTGGAGTACTCACTACTTGCTGAGTTCACATTGGTTATCAAGCAGAAGCTTCCTGGCATCTATGTACAGCCTTCATACAGATCAGCGCTGATGTGGTTTGGTGTGATTTTCATTCGCCATGGTTTGTACCAAGATGGTGTGTTTAAGTTCACCGTCTACATTCCTGATAACTATCCAGATGGAGACTGTCCGAAGGTTGTTTTTGACACTCCAGTTTTCCACCCACTAGTGGACCCAGTTTCTGGTGAGCTTGACGTGAGGAGAGCTTTCACCAAATGGAGACGAAACCACAATCATATCTGGCAGGTGCTTATGTACGCCCGCACAATCTTCTATAAGATCAACACTATGGAGCCGCTCAACCCAGAGGCTGCTGTGCTGTATGACAAAGACATCCAGCTCTTCAAAAGTAAGGTGGTAGACAGTGTCAAGCTATGCAATAGTCACCTGTTTGATCAGCCCAAGATAGATGATCCTTATGCAATAAGCTTCTCCCCGTGGAATCCAGCGGTGCATGAAGAGGCGAAAGAGAAGATGTTTGCACATAAAcgGCGACCTGAGGATTTTAACAAAGGCCTTCCGGTGTCTGGACTTTCCTGGGTGAAGCCTGGCTCCACTCAGCCTTTCAGCAAAGAGGACAACCCCCTTCAGACGTGAAATTTCAGTGCTTCCGTCTGTCCACCAAAGGGGCGCTATGCTACTGTGGCTGCACCGAACCACACATATATCGAAGTCTGATGCAGTTCTATGAACTTCATCTTCATTCGCAAAACTCTCGCTCAgctttaaagaaaacaaatcattttaaactggtaTAATGGCTTAAGAACCATAGTCCTGTACCTGGTATAGCCCCGAAGACCCTACTCGTTCATTTCAATGCTGATGCTTGAACGCACAGAAGATGGTTCTAGAAAGTACTGTTAATTGCCCATGTTGATGTTTTCAGGCACAACAAACCACCTCGCTCTTGTGTGTAGGTCATGCTCTTCTAAATGATCACTTTGGGTTTCTAACTAATTGTTTTACAGATTTAATATGGTTTCCATTTGGTTTTCCTTTCTCTACAATCTTGCTTAATAGTTGTACTTTCAAACAAACAATCATAAACTGGGACAGAACACCTTGATTTTGCATATTTATAgctttgagtatttttttttttgtaataacctGTGTATGAAAtggttttaaatgtaaattacagAGCAAGACATATACTATTCATTAAGACACTAAGTTAATCCTCATTGTTTAGTAATGTAATTCACTTTTATTGTCCTAATGGTTTGATCTAAAAGGGTTTGATGTGTAAATAGTGCAGCAGTTCGATTAAATCAATGGCCTCTATAGCAGAGTCCATACATCTCATTTATTTATCTAGAAATGTATGATTGTTTAAATTTTAGACATTTTGCTCTTTTACAATaccccctttttttctttttaatgtttattttgggCTGTCAGTGAGAATACTGATTTGAGCCCAGCTGTGTAagtaatgtaatattattttttaaatctgttaaacgcaaataaatgcataaacgGTGAAACTGG
>TCONS_00066319
GATTATTCGGATAACAGTGTCGTCGGTGGTTTAGTTTACCGCACATGGTTAAAAGCCAGTCCAAATCAAAATGTTTGAAACCCGACAAGTTACCGTGTAGCATGTCTTTAGCCAGGTGACATTATTTGTCGCAGCAAATTTTTCGGATGCCACCCAAAAGTGAGCAAGCACACACCCATCTAGAGCTCAATGAGTAATGAACCCATTTTGGAGCATGTCTACAAACGCTGGTCGTAAGagatctGATGGTGAAGAGCAGAGTGGTTCAGGGGAGCAGAGAGCCAGTCCAGCTCGTCCTCCATTTGGTAAGAAGCAACTTCCCTCCATCCCGAAGAATGCCGTCCCCATCACTAAAGCCGCATCACCAGCCTCTTCTACACAATCTGCCAATGGCACACATGCCTCATACGGCCCTTTCTACCTGGAGTACTCACTACTTGCTGAGTTCACATTGGTTATCAAGCAGAAGCTTCCTGGCATCTATGTACAGCCTTCATACAGATCAGCGCTGAGTAAGAATGTCTCTTCCATTCTGTTCTGTCTGCCACAGATGCTCTTTATACAGAATGTTCTTTTGCTGCATTCCATTCGACTCCAAAAGAATTTTCAACTTCCTGCTTGGAGAAGTGCAACAGAATGTGCAGTTTATTAACGTCTTGTTGAAACCTTTGTGGTTTGGTGTGATTTTCATTCGCCATGGTTTGTACCAAGATGGTGTGTTTAAGTT
>TCONS_00066321
CAAATTTTTCGGATGCCACCCAAAAGTGAGCAAGCACACACCCATCTAGAGCTCAATGAGTAATGAACCCATTTTGGAGCATGTCTACAAACGCTGGTCGTAAGagatctGATGGTGAAGAGCAGAGTGGTTCAGGGGAGCAGAGAGCCAGTCCAGCTCGTCCTCCATTTGGTAAGAAGCAACTTCCCTCCATCCCGAAGAATGCCGTCCCCATCACTAAAGCCGCATCACCAGCCTCTTCTACACAATCTGCCAATGGCACACATGCCTCATACGGCCCTTTCTACCTGGAGTACTCACTACTTGCTGAGTTCACATTGGTTATCAAGCAGAAGCTTCCTGGCATCTATGTACAGCCTTCATACAGATCAGCGCTGATGTGGTTTGGTGTGATTTTCATTCGCCATGGTTTGTACCAAGATGGTGTGTTTAAGTTCACCGTCTACATTCCTGATAACTATCCAGATGGAGACTGTCCGAAGGTTGTTTTTGACACTCCAGTTTTCCACCCACTAGTGGACCCAGTTTCTGGTGAGCTTGACGTGAGGAGAGCTTTCACCAAATGGAGACGAAACCACAATCATATCTGGCAGGTGCTTATGTACGCCCGCACAATCTTCTATAAGATCAACACTATGGAGCCGCTCAACCCAGAGGCTGCTGTGCTGTATGACAAAGACATCCAGCTCTTCAAAAGTAAGGTGGTAGACAGTGTCAAGCTATGCAATAGTCACCTGTTTGATCAGCCCAAGATAGATGATCCTTATGCAATAAGCTTCTCCCCGTGGAATCCAGCGGTGCATGAAGAGGCGAAAGAGAAGATGTTTGCACATAAAcgGCGACCTGAGGATTTTAACAAAGGCCTTCCGGTGTCTGGACTTTCCTGGGTGAAGCCTGGCTCCACTCAGCCTTTCAGCAAAGAGGACAACCCCCTTCAGACGTGAAATTTCAGTGCTTCCGTCTGTCCACCAAAGGGGCGCTATGCTACTGTGGCTGCACCGAACCACACATATATCGAAGTCTGATGCAGTTCTATGAACTTCATCTTCATTCGCAAAACTCTCGCTCAgctttaaagaaaacaaatcattttaaactggtaTAATGGCTTAAGAACCATAGTCCTGTACCTGGTATAGCCCCGAAGACCCTACTCGTTCATTTCAATGCTGATGCTTGAACGCACAGAAGATGGTTCTAGAAAGTACTGTTAATTGCCCATGTTGATGTTTTCAGGCACAACAAACCACCTCGCTCTTGTGTGTAGGTCATGCTCTTCTAAATGATCACTTTGGGTTTCTAACTAATTGTTTTACAGATTTAATATGGTTTCCATTTGGTTTTCCTTTCTCTACAATCTTGCTTAATAGTTGTACTTTCAAACAAACAATCATAAACTGGGACAGAACACCTTGATTTTGCATATTTATAgctttgagtatttttttttttgtaataacctGTGTATGAAAtggttttaaatgtaaattacagAGCAAGACATATACTATTCATTAAGACACTAAGTTAATCCTCATTGTTTAGTAATGTAATTCACTTTTATTGTCCTAATGGTTTGATCTAAAAGGGTTTGATGTGTAAATAGTGCAGCAGTTCGATTAAATCAATGGCCTCTATAGCAGAGTCCATACATCTCATTTATTTATCTAGAAATGTATGATTGTTTAAATTTTAGACATTTTGCTCTTTTACAATaccccctttttttctttttaatgtttattttgggCTGTCAGTGAGAATACTGATTTGAGCCCAGCTGTGTAagtaatgtaatattattttttaaatctgttaaacgcaaataaatgcataaacgGTGAAACTGGTCTGAAATGGTGTTTGCTGGCAGTATCATTTCTGTGGTTTAGACATTTTCAATAAAAGAGATTATTAATGGTGAGAAtctcatgtgtgtgtgcgcgtggaTGAATCACACATTTGTTGCCTGCCTTTTTATTTGTGTTGCTTTTAGgggaaaaatacttattttacaaGTAAAGGGTGTGACCTATATAATCTTGCTGTGAAAAGCAAACTGGTAAGTTTTATAATACTTTTTGTATAGTTATGCACTTTGTTTTATATGTGGCATATACATTTATTCTTGATGTGAAAAGCAAACACTGGTAAGTtaagcaaaaatatttaaaactttaatatttCTCTTTATTGTATGTGTGACAGATATATTAATTTTGTATGTATATAAAGTGAACAATTGTAAGC
>TCONS_00066322
CCAGCCTCTTCTACACAATCTGCCAATGGCACACATGCCTCATACGGCCCTTTCTACCTGGAGTACTCACTACTTGCTGAGTTCACATTGGTTATCAAGCAGAAGCTTCCTGGCATCTATGTACAGCCTTCATACAGATCAGCGCTGATGTGGTTTGGTGTGATTTTCATTCGCCATGGTTTGTACCAAGATGGTGTGTTTAAGTTCACCGTCTACATTCCTGATAACTATCCAGATGGAGACTGTCCGAAGGTTGTTTTTGACACTCCAGTTTTCCACCCACTAGTGGACCCAGTTTCTGGTGAGCTTGACGTGAGGAGAGCTTTCACCAAATGGAGACGAAACCACAATCATATCTGGCAGGTGCTTATGTACGCCCGCACAATCTTCTATAAGATCAACACTATGGAGCCGCTCAACCCAGAGGCTGCTGTGCTGTATGACAAAGACATCCAGCTCTTCAAAAGTAAGGTGGTAGACAGTGTCAAGCTATGCAATAGTCACCTGTTTGATCAGCCCAAGATAGATGATCCTTATGCAATAAGCTTCTCCCCGTGGAATCCAGCGGTGCATGAAGAGGCGAAAGAGAAGATGTTTGCACATAAAGTGAGTGTGTGACGCTCCCCTGACTGCTCCCCACAACCAAcgGCGACCTGAGGATTTTAACAAAGGCCTTCCGGTGTCTGGACTTTCCTGGGTGAAGCCTGGCTCCACTCAGCCTTTCAGCAAAGAGGACAACCCCCTTCAGACGTGAAATTTCAGTGCTTCCGTCTGTCCACCAAAGGGGCGCTATGCTACTGTGGCTGCACCGAACCACACATATATCGAAGTCTGATGCAGTTCTATGAACTTCATCTTCATTCGCAAAACTCTCGCTCAgctttaaagaaaacaaatcattttaaactggtaTAATGGCTTAAGAACCATAGTCCTGTACCTGGTATAG

Function

symbol description
aktip Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in several processes, including early endosome to late endosome transport; endosome to lysosome transport; and protein polyubiquitination. Predicted to act upstream of or within apoptotic process and protein transport. Predicted to be located in cytoplasm and plasma membrane. Predicted to be part of FHF complex. Predicted to be active in nucleus. Is expressed in mesoderm; myotome; notochord; pronephric duct; and somite. Orthologous to human AKTIP (AKT interacting protein).

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0007032 endosome organization biological_process
GO:0007040 lysosome organization biological_process
GO:0015031 protein transport biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0045022 early endosome to late endosome transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0070695 FHF complex cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030909-5 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in several processes, including early endosome to late endosome transport; endosome to lysosome transport; and protein polyubiquitination. Predicted to act upstream of or within apoptotic process and protein transport. Predicted to be located in cytoplasm and plasma membrane. Predicted to be part of FHF complex. Predicted to be active in nucleus. Is expressed in mesoderm; myotome; notochord; pronephric duct; and somite. Orthologous to human AKTIP (AKT interacting protein).

Ensembl:

ensembl_id ENSDARG00000026862

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066317 False 969 mRNA 0.48 10 36467315 36482721
TCONS_00066320 False 2284 lncRNA 0.42 10 36467794 36483796
TCONS_00066318 False 2010 mRNA 0.42 10 36467796 36483678
TCONS_00066319 False 727 nonsense_mediated_decay 0.45 5 36467822 36475644
TCONS_00066321 False 2250 mRNA 0.40 9 36470159 36484078
TCONS_00066322 True 949 mRNA 0.47 8 36472789 36482967

Neighbor

gene id symbol gene type direction distance location
XLOC_033893 NA coding upstream 13036 36453908 ~ 36454279 (+)
XLOC_033892 NA coding upstream 74623 36371851 ~ 36392692 (+)
XLOC_033891 irx3a coding upstream 419237 36035432 ~ 36048078 (+)
XLOC_033890 NA coding upstream 639066 35826405 ~ 35828249 (+)
XLOC_033889 NA coding upstream 704102 35435246 ~ 35763213 (+)
XLOC_033895 chd9 coding downstream 520 36484598 ~ 36621294 (+)
XLOC_033896 NA coding downstream 148340 36632418 ~ 36634690 (+)
XLOC_033897 NA coding downstream 168923 36653001 ~ 36657518 (+)
XLOC_033898 FP015866.1 coding downstream 187434 36671512 ~ 36673193 (+)
XLOC_033899 NA coding downstream 214564 36698642 ~ 36699829 (+)
XLOC_033888 NA non-coding upstream 1115538 35348486 ~ 35351777 (+)
XLOC_033901 AL929307.1 non-coding downstream 576327 37060405 ~ 37185248 (+)

Expression


Co-expression Network