XLOC_033898 (FP015866.1)


Basic Information

Item Value
gene id XLOC_033898
gene name FP015866.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 36671512 ~ 36673193 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066326
ATGAACAGCTGTGATCATTGTAATGTATTTTGTCTCTGCTGTGTAGTCTGTTGTCCAGCGGAGGGTTCCAGAAACTGCGGGATGGCTTTCGAAGGTCGTTTCAGGATGGCCAGCCATTCTGGATCAAGCTCAAGCTTCACGTAGGAGCTTCCTCCACAATCTGCAATCTGCAATGACAAAACAACTGAATCTACCTCTGGATCTCACTTCATACTGAAACATGCTGGATGACGGAAACAGCAGGATCAATATCTGAAGGAAGAAATTCGTCATCACAGAGTGACAGTGAAGGAGGACCCACCTGGTGCTGCATCAGTGTTGAGTCGAGTGCAGGTGAGCAGAGATCCAGTATCTGGACTGCAAGTGCTCTAGAagctcagcagcagcagcagggctTCCCAAAGTACTGCTCTTCACTTCCTGTCTGAGGAGCTTCTTCCTGCGCACAAGAGCATTCATGTTACTGTACTGATACATGCCTCAAGAATAATCATGCAGCAGGAAGAGGACTTTGGGCATCTACATCTGGAGAAATTCAGtgagaatgtttttatttcattagaGAGGAGTCTGATGTGTATTAAATCTATTCTAATTCATTTGCAGTTCTAGTAGTTTTTAACACAACAGTAAATCTGACTGCTTGACACTGAAAACtgcatttataaaatgtgttgcAATAATTATAAAACACCAAATGTCATTTACTATAAACAAACTAGGTCAAATTGAAAGTCCCCCTCCTGTGCACAACAATGGAACTGTCCAACTGTTGCTTTCCactttacttttacttcactttatttaatcaaatgtgTAGAGTCTTCACTGCTCATCATTGCTGATCTGTACTGTACACACCAGCTACTGGGAGAGAATGATTCAGCATTTTTATTGTGCAAAGTGTTTTCTATGGGGGGGATTAATGCAGCATAAATTCATGAAGTC

Function

GO:

id name namespace
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0060897 neural plate regionalization biological_process
GO:0043009 chordate embryonic development biological_process
GO:0003401 axis elongation biological_process
GO:0090036 regulation of protein kinase C signaling biological_process
GO:0035295 tube development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103048

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066326 True 948 lncRNA 0.42 2 36671512 36673193

Neighbor

gene id symbol gene type direction distance location
XLOC_033897 NA coding upstream 13994 36653001 ~ 36657518 (+)
XLOC_033896 NA coding upstream 36822 36632418 ~ 36634690 (+)
XLOC_033895 chd9 coding upstream 50218 36484598 ~ 36621294 (+)
XLOC_033894 aktip coding upstream 187434 36467315 ~ 36484078 (+)
XLOC_033893 NA coding upstream 217233 36453908 ~ 36454279 (+)
XLOC_033899 NA coding downstream 25449 36698642 ~ 36699829 (+)
XLOC_033900 tox3 coding downstream 225429 36898622 ~ 36969256 (+)
XLOC_033901 AL929307.1 coding downstream 387212 37060405 ~ 37185248 (+)
XLOC_033902 NA coding downstream 413404 37086597 ~ 37086812 (+)
XLOC_033903 NA coding downstream 513687 37186880 ~ 37190319 (+)
XLOC_033892 NA non-coding upstream 278820 36371851 ~ 36392692 (+)
XLOC_033890 NA non-coding upstream 843263 35826405 ~ 35828249 (+)
XLOC_033905 NA non-coding downstream 906477 37579670 ~ 37585910 (+)

Expression


Co-expression Network