G1469217


Basic Information

Item Value
gene id G1469217
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 58728347 ~ 58731402 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1680515
AAAATTCTAAGAGTAAAACAAAGAAAGAAAATACTTTATTTTTTTAGGAATAAAAAACAAGAGTTACAGAGACTTGAGCAACTCTGGCACAGGAAGACGAAAGTAACCGagtggctagccagctaactaacaaACAAACCAAATATCAAAACCTCTCTCCTCTAATACACTGTACAAAATGAGTTCTTGTATAAATAAGGAAATGTTTTACAAGCAGTGAGAGAGATGAGACAGTTGTATGTTCAAAATGTCAGATTTCTGCCGAATTACCCAAGAGATTACAAAATGACTCAAAGAGTACAACTTTCACAAAATGTGTCTCAAATGTAATTTTATAATTTGTGAATGTTAACTATACTTTAATCTGATCTACTTTTGATATTCTAGGTTAAAGTCAGACATTTTTAAACAACCAGTGTGGCTCCCATCTATCCACTGCTGGGACATCCCGTTTTAGCAGCAAAACATTTTGAACCTATGAAATAAGCCATTGAAGCTACATGATCTGGACAACAAGCAAGGACAGGATAATGCTAGGTATTAGGGTTTTACTTTACATAAGCATGGTTTGAAAATAAGTGCAAGTGAAACCACCTGCTCATTTTCCTTGGTATTATAAGATACCTGTCAAAGGTACGCACCAGGGAAACATACAATAGCCTCAAATGTGCTCCCTCAGACAATGATTTACAGGTAATTGTAGCTAGTTGTAACTTAAAGTGAAAGTCCACTCCAAAATTGAAATTTAGATCTACAGAACAGATGGACATTATACCGCTTTTGAGGTCTGAAGACGACTGACAAACAATAGATTTTGGATCTCTTTAACACCATTCACCATAACACAATGGATTACCTGACTAATACTACATTCTCACAAGGAATTGAGTGTCATATAATGATTTGCTCTCCCCAAAAAACAGCAATAAGCAAGTTGTCAAATCTGAAAATTTGATTCAATGAGCAAGACTGCAGTGTAACAACTGGTCATTTCATAGTTTCAAAACCACGTTTTTTTGTATTTAAAGTGATGGCTGATACATGGACTATCAGTTTATTACAATAGAAAATAAAACCATGACCTTTTCCTTCATGAGGAGCACTGGATCTGAAAACGTGTATTATCTGGACAGATCACAAGACATCAACAAAACACTCACATCAACAAAGGTGGAAACAGGAACAAACAATGGTCTTGACATGAGTTCAACCAAAAACAAGAGCAGAAAATAGTCCTAATATTTACAGAACGATAGATAAATGCTGAGCTCTCCTCATCAACACTAAAAAAAGCTAAGTAGACCCATTGCCCTGTTCTCTGTATTAAAGATACAGTAGCATATACTGGTCTTCAGCTGGATGTACCAAACCGAAACAAGCAAATGTCGATAAATGAAGCACACATGTATGGATCTCTATTCAACAATACATTCATTCAGAACCTAAAGGAAACATATTGCTTGTTCACCACTGACCAGGGAACTGCCACTTTGCGAAGACGTTACTATAGCATTACTGTAGCTTTGTATGCCAATATGGATGAGAGAGGCATGTTCTCCAAGACAGATACTCTGACAGATCACTTTGCTGACAGGTGGATGGCTTCATCATCTTTGGTGTTGCAGACATAAATAATAATTAACAACGTTTTGTAGAGCGAGGACCGAGGTATAGAGATAGGGAAGGAAGAAGAAACAGTATATGTGATGTCATTAATACTGAAAAATGGCAAAAACCCAAGATCCAGTGTGATGGGGGGATGTTTACTAGGGTAACACTAGGTTTTAACAAGGCATGGTTCAACTCAGCCCTGTATAATATTACGTCAATATAACATCTGATATTGATTGCATCTGTATGAACTTTTCTTTGCCAAACCCTCAACCGTAACTGAAACTGAATAGCCTTCAATGAGGAGAAAGAGGCTTCCCCTTCTTAAATAGGGCTAATCTGCCTGGTTACAGTTAAGGCTTAGACATACTTTGGTCGTCATTTCTAACGAAATCCGCCAAGTTTACGCATTTTTGTCTTTGTTGAAATAAGAAACAATTCATCCAAGGTTTAGTTAACTGCTGTAGAACAATTTGTTATGGGACACTTTTTTACCAACACTTTCATATTCTGTTTGGTGTTTTCTGGATAGCAGCCTCATTTTCTCTGACAGATACAATAGAATGCTTTTACACTAGACTAGATGTACATATCCACTGGACTGGTCTGAGCTGGAGGGCAAGGTTGCCATTGAGTGTCATTGAGTGTCTCCAAGATAAACGTGGACGTGGTTCAGTTAAAGCCTATTTCACACAAAAACAATATCATATTGAACAACACAGTGCTCTGGAACGGAAATGAACGTGAAGAAACATAAAAACATCAAATCATCTCTTAAGTTTGCATGGACAATGTGCAAACGCACAAACtcaacacaataaaaaaaatcctatgaatctcttataaaataaaATCTCAAATCTAAACTTTTTCCCTACTGCTAAAATCTCAAAtcttttgaaaataaaatacaacaaaaacACGTTTTATAACAACTAAATCAACAACAAAGATAACAGAAGGCATGACAGCTCAGAAGGGTTCAAGTGAACGCCCCAAAAGAGAAAACATACTTTACTTCTTTCTACAAATTGTTTTATCAAATGAATTGACAGTCAGGAATTAAAACTCAGGAGACAACAGCAGCATTGAGAAAGACTGGCAGCTCCCTTTCTCAACAACAAAGGACTCTTCTTAGTCCTACTTCTCCCCTCATTGCTTTGCTTTTTCATTTATTTGTTTGAGCTATTTTGCACACCTATTTCATAGTAACCCAACTGCTCAAAACTAAGGCATGTCCACTTATTTGTCTGTCTACTTTGTACAAAAGGTGAAATTCCCTATAGACATCTGAACAACTACCAGAACAAAACCGCTTAAAACCACTTCTTATGGACACTGGTGTGACATGGACTCTAGCACAAACCAAGTCAAGTATTttgtataattattattttgtataattattattatacgaTCTATGAATCCAATAAAATCCAATAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1680515 True 3056 lncRNA 0.36 1 58728347 58731402

Neighbor

gene id symbol gene type direction distance location
LOC110494238 LOC106565465 coding upstream 133 58716072 ~ 58728214 (+)
LOC110494235 LOC106565463 coding upstream 21153 58696691 ~ 58707194 (+)
trnar-ucu-6 NA coding upstream 382683 58345575 ~ 58345664 (+)
LOC110494225 NA coding upstream 419327 58305759 ~ 58309020 (+)
LOC110494220 LOC106583293 coding upstream 478922 58135834 ~ 58249425 (+)
LOC110494239 LOC106565466 coding downstream 101492 58832894 ~ 59011079 (+)
LOC100136832 lrrn1 coding downstream 479275 59210677 ~ 59245106 (+)
LOC110494244 NA coding downstream 527077 59258342 ~ 59266492 (+)
LOC110494246 LOC106565476 coding downstream 551397 59282799 ~ 59438025 (+)
LOC110494249 LOC106565477 coding downstream 729912 59461314 ~ 59465333 (+)
G1469113 NA non-coding upstream 191532 58536537 ~ 58536815 (+)
G1469111 NA non-coding upstream 193554 58534525 ~ 58534793 (+)
G1469087 NA non-coding upstream 210848 58517300 ~ 58517499 (+)
G1468596 NA non-coding upstream 234701 58493405 ~ 58493646 (+)
G1468593 NA non-coding upstream 238701 58489385 ~ 58489646 (+)
G1469237 NA non-coding downstream 26108 58757510 ~ 58839482 (+)
G1469374 NA non-coding downstream 201611 58933013 ~ 58933298 (+)
G1469394 NA non-coding downstream 310174 59041576 ~ 59041883 (+)
G1469405 NA non-coding downstream 337872 59069274 ~ 59069515 (+)
G1469406 NA non-coding downstream 338188 59069590 ~ 59069927 (+)
G1469076 NA other upstream 220462 58507297 ~ 58507885 (+)
G1467219 NA other upstream 1114047 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 1180169 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 1244758 57478797 ~ 57554480 (+)
G1467031 NA other upstream 1578004 57149303 ~ 57150343 (+)
G1470607 NA other downstream 1370490 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 2241076 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 2824917 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 3967101 62698503 ~ 62698815 (+)
G1473177 NA other downstream 3978937 62710339 ~ 62711136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G58040 NA non-coding NC_048565.1 CM023219.2 52703837 ~ 52755442 (-)
bowfin (Amia calva) G51574 NA non-coding CM030126.1 CM030126.1 12002925 ~ 12010394 (-)