G51574


Basic Information

Item Value
gene id G51574
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12002925 ~ 12010394 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64527
AAGGTTTTTATGCCCCTGTTTGGCTGTGTAGTAAAGATGTCTTGTTTTGCTAGCTGATTGAGGGGTACATTTGACATAAAAAGCTGTGTAGAGCATTGTAGAAATTTTAAAATAGCAACCAGTAACCAGCAATTTCACCAGTGGATTAGATGGGATAGGTCATCTATTAGGAACCACCCATGGACACAGACGAAAAACaagacttttatttaaaaaaaaaaaaaaaatcaaagttgacatttcaaattcagaGTCAAACcaaagaacaagaaaacaaaaaagctgtgttttttcatgaataaaaaataaaataaagaagatCAGCAAGTTTATGGCACaaggaagaagggaaaaaaaatacaaaaccgaAGACATTATCTaacatttttgtacaaaatgagttcttgtataaataaaaacggTTTTAAAAGCAGCTGTATTGTGAGAGATGAGCcagttgtgttttattggaTATGGACTGTAGAAACCTGAAGGAGAATTGTTAGTTTGGCAAACAAACATGGATTCAATTGATTTATCATCATCAATAATGATAAGAAGAAGACTCGCATTCTTTGATTTGTAGCAGTACTTCATTTTTTGCAACGAGACTGGAAATTTGCAGTTCATGCCAAAATGTCCAATTTGgtctccagtgtggctttgaaagattgtttttccaaatattttaatcaatgcGATTTgcccttcatttatttatagttgCTGTAGGTAAATAACTTCTAGTTCCCAGTACTACATAAATAATTCCTATTATCCTCAAAAAGGGACCTGACATTTCTCATATGATACACTTTTGAAGGGTTATGCAAGTTGGACAGGGAAGCACTGTAGCTCTATGTacatattgtttaataaaaccAATTCTTAAACCTGAAATCTAAACTGAGATAATCTgtcaaaatgtgtattataaatTACATCTCCCTGTACCTGAATTATTTCAAGACAGTGCAAATCTTAACATCAGAAATCTTCCCTGGTGggatactgtttttttaaactacgTTTGCTGAaagaaaggcactatataaaatgAGCAAGTTATTCATCCCCAATTAAAATCTCATAGAAATGGTTACATAGAGGCTAGTTATTGTTTGTAAGCAGACTCAAAAGTCTCAGTCAATTCCTAACCACAGTACTCCCATACAGGTGACCATTTCTCAAGCTTTTAAAAAGGGTGTGGCCATCTCAGGTGGCCAAACACTGCCACAAGGCATCATGAACTACTGCATGTCATTACTATTGAGATTGCTTTGTCTATCCATTCACTAATCGAAAATAAAAGAATGCACCCAAGacaaatatccccaaaacaGCAGTTAAAATGGATGTTTTGATGGATACATTTGGGGGCAGGGGGGAGTGGGGAAGACATGGTTATGCCAAAAACAAGGTTCTCCTTTTTATAGTTTTTGGGTTTTTCTTGAAGCTCAACTTCAACCTCTCACAATACATTTGGCAAACTATTCAACCCCCAGGTTTCCTCAAtgagccttttcttttttcatacaACCAGCACGGCCTGCACCTCACCAACTGCTTTCACATTCCTAGCAGcagcaaaacattttgaaactatGAAATAAACCCCGGGCGCTACATGAGCTGGGTCGCAGAATAGAAACTATGTTCAGCAGCCGATGGCACACCGGCTCTGGCGGCAGAAGTGTAGCCGCTTGGTAGGAATCGCACCAGCATGTGAACACAACCTCTCGTGTTCACTGTGAGCCCTTGAGGGCcttggtgaaaataaatatccGAGATGTTTTTGCCCCATATCAAAAGTACATAATTCAGCATCAGCTAAATCACTGCTTGTTACATGATTGTGCCCTGCTGCCACCTCACTGGCTATGAGACTTCCTCTGCCCTCTGATTGGCCCCTACTGCACACACTTCCAGCAAATCAGTGAACTCTCTCAGTTATGAGGCTTTGAAGGTGAGCTAGTTTGGGGGCTGGGTGGAGCTCACTGTAATGTGCCCCAATACCCTGACCCCCAGACCCAGACCCCGACCCCAACCTCCTTCTGTGTTGGGCATGGTTGAGGAAGTCATTTCAGTCTACTTACTGGGATTAAGATATGTacttaaactaaaaaaatatatctttccCACTCCTGTATGCGTCAGTGGAGGCAAAACATCAAATGTTGGTAACATGTAGACTTCACCAGGTAGGTGCCGATATGTGGCCTGTGACTTAACCGAAATCTGCATTAATAGGGAAAACCCATCTGTGGACAAACACTGCATAGTAACAAGGTTAATTTCATAGTTTCAAAACCATATAATGTTTCATACTTAATGTAGTGGCTGATTAAAAGTACTATTAtcatttattgttatattgagaagaaaaaaacctcAACACACTCTTTCCTTCATGAGGTGCACCTTTCTGAGGAACTGTAACTGTCATGTGTATATCTGTACataaatgcatcacaaacaacaaaagtaaTAACAGCTAGGGCAAAGGTGCCTAGAATGGAAGGATGGTCCagacatcatttaaaaaaagtcccAACATTTATAGAGAAACCCTGCAAGCACAATTCAGAAATATCACTTTACTATCACCTTTATTATGCAGCCAGCTTGCTTTCTGCCTTCTCTGTTGGATCCCCATTGGTTAATTGTGTAGAGAACATGCTCTCTCATGTGCACTTCAGTGAGTGAAGACCCTGCTTTTGGAAAGCGTTTTAAAAGGTCTTATGGCCACCCTATAGAGGGATTTCATATCAGAAATCCCAATACACTGCATTCAAGCCTGGTGCATCAAGCATCTCTGACATGTTCACCCATCCCCAGggctttttaattgtaataaacGGAGAACATGCCATGGGAATATTATACTTTCTGAAAAGTGTCACTCCGTTCctacagatgtttttaaaacaaatgtgaaagcACTCACGTTTGCTTCTTATAAGGAAgtcaggtgcgtgtcagtgacCGAATACAATCTGGGGTCTTGGACTGATAGATCAGGCACTGCTTCATCCTaacactgtgtatgtgtgtttagaGAGTGGGGGGTACATGAGACCAAAATGAACATTGATAATCCATCTGCTCTAAGAGAGTCCTATAGGAGCTGCGGCTGATATATGGCCTTAACTAAGATCATATCATTCATTTTGAGAGGATATTTCAAAGAGCTTAGTTCCTGGAGAGATGTGCGTATATGAACACTTAGAGGATTCCTTCAGACTCCCAGTCCTAGATCAGTttcccaagaaaataaaacaaccactTGGGAAAAAAGGTATGGAAAAAAGCTGCCTggtgcacacaaaaaaaggttttagtGAAAGTGAGACTAGcacttgtttttgatttttgctACAAATGTTTGTGACAGATAAAGCTTCCTGACTGGTGGATGGCTTCTGAGTCTTTggtaacacaaataaaacctttctgagagagagcgagagagagaaatgagaaaatgctCATTGGGATAAGAGGACTGTATCTCCTTCCATGGTGTAGCGTTTGTTGTAGTTGGTGCTTTTAAACTTTGCGTGGGAAAGAAGTCGAAAGCCTTGCCACCAgctagtttattttttacagtcgTGACAACCtaactgttgtgtttttatgaaagGCATTATATAGTAAACCTTTTTttaagggggggaaaaaacaacatacgtGACATTCTGCCTTAGATTTTGGTGCTTTTTGTTTACAGAACAAACATTTAACGTAGGATGTAATCTGGCCAACGTGGGGAGTGAGTTTGCACTGATGTACCCGAGGCATGCATGCCGATAAAGCATTGCCAAACTGAGCATTAACATGTCACTTCTGTGAAGGTAGAAACCTGCTGAAACATTAGTGATCGTATTTTAAACTCCCCCAAGGAGTCGCCATAGgacctttaacaaaatattgGCACATTTCAAATTGAGTTTTAATCAGGAACatggatattttaaaaatgtacaatttgctTAATGAACGTGCATTCTTGGAAGCATGTTTGGTCTTCCATGATAACTGGACATGGAGGCTACTTTTGCAGAGTCAGTGGGATCTACAGTACACATAATGAAGTGGGAAGTCTTGTGATTAATTGCTTAGTGTCCCTTTCAGCAGTCCCGTGACTGAAGGAGATACAGACCTCTAGGAAGAGATACACAGAGTCGCCACATCATATAGCCCAACTAGAGAACACAACAATGCACTataaaaacataacagaaatgcattattgtTGATTCCTGATAAATCTATATGATGCAGACTTTAAACAATGCATAGATCGCGGACTTTATCATAAAAATGCAGCAGCAGCTTCTTCTGCAGAAAGGACGTTTTGacctgttttgcttttttttttttttttttttttttttttttggaattgcAGTCAGAGTATAATTATGTGGCCATGTACACTATATTACggaattattgtatttcttaacacatttttttccactgcaaacagatgtgttttgtagttttaatttagGTAATAGAGTGTATAGTACCACAAACCTCAAAGCTTCAGGACAAATATCTGAAAAGTATTGAGATGTCAAGAATGTCAGTATTTGTTGTAACTAGGCATTTTAAATAACCCCTATTTGACTTTCTACTGACTGTGACCATAATTTATGCTAAAAAGTCACTTCTGGCAGCGTACTTTTTTTACCTTTTCCAGCTCAGAAAACTGTCTAATgtcaatgtttatttacatactttattaaatacacattagTTGTTATGTTACTATATCAAAGTTTGtgatgatttttacatttttaggaaaataaaatctactcccacaatatacatatttaaatatcttttgatTGTCTTTTGCTTTTCATAATGGAAGACTGGGCTACCTTAGATTGCCCAGTGATCGCCTTAGATTCAGTTAAATGATTAAAAGTACACATTAATTGTTCAAAGACTTGCATTTGATCTCTATACTATAAATCtcttcacatttatatattccAATTCCTACGCATTATTACTTGTATATGTGGATCCAGTTGCCCTCTGTGTTACTCCAATGGGAAAAGATTGCAAGAAGTAGCCTTAAGCAGTAtgattttttaacattttttttagtttttgtttttaacgtacaataaaaaaaaatatcaaatctaCAACATCGCAAAATTtgataaatgcttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64527 True 5216 lncRNA 0.37 2 12002925 12010394

Neighbor

gene id symbol gene type direction distance location
AMCG00008790 NA coding downstream 80987 11908698 ~ 11921938 (-)
AMCG00008789 lrp1,LOC103376578 coding downstream 107462 11882010 ~ 11895463 (-)
AMCG00008788 LOC106565466 coding downstream 124739 11800161 ~ 11878186 (-)
AMCG00008786 NA coding downstream 248512 11747072 ~ 11754413 (-)
AMCG00008785 shmt2,LOC102307393,LOC101478662,LOC103359782 coding downstream 274755 11714662 ~ 11728170 (-)
AMCG00008792 NA coding upstream 1163 12011557 ~ 12022986 (-)
AMCG00008793 NA coding upstream 13766 12024160 ~ 12033766 (-)
AMCG00008794 NA coding upstream 24772 12035166 ~ 12066116 (-)
AMCG00008797 NA coding upstream 97488 12107882 ~ 12146340 (-)
AMCG00008796 NA coding upstream 139767 12150161 ~ 12161522 (-)
G51403 NA non-coding downstream 744707 11226487 ~ 11258218 (-)
G51354 LOC100846954 non-coding downstream 838551 11163346 ~ 11164374 (-)
G51344 NA non-coding downstream 862652 11057677 ~ 11140273 (-)
G51261 eif4b non-coding downstream 1163253 10839106 ~ 10839672 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding downstream 1199216 10801108 ~ 10803709 (-)
G51588 NA non-coding upstream 70818 12081212 ~ 12093785 (-)
G51634 NA non-coding upstream 332746 12343140 ~ 12343342 (-)
G51674 NA non-coding upstream 428357 12438751 ~ 12439523 (-)
G51693 NA non-coding upstream 444525 12454919 ~ 12476199 (-)
G51700 NA non-coding upstream 493068 12503462 ~ 12503679 (-)
AMCG00008777 dctn2,LOC102785932 other downstream 676566 11235642 ~ 11326359 (-)
G51250 NA other downstream 1203771 10797632 ~ 10799154 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other downstream 1284724 10670949 ~ 10718201 (-)
G51241 NA other downstream 1290440 10675756 ~ 10712485 (-)
AMCG00008744 NA other downstream 1399552 10560866 ~ 10603373 (-)
AMCG00008815 NA other upstream 590897 12601291 ~ 12605260 (-)
G51797 NA other upstream 880417 12890811 ~ 12891597 (-)
G51799 NA other upstream 884941 12895335 ~ 12897134 (-)
G51867 NA other upstream 990432 13000826 ~ 13001888 (-)
AMCG00008845 NA other upstream 1080143 13090537 ~ 13097934 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1469217 NA non-coding NC_048581.1 CM023235.2 58728347 ~ 58731402 (+)