G51251 (krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553)


Basic Information

Item Value
gene id G51251
gene name krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10801108 ~ 10803709 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64129
CAAGCGACATAAAAAACAGGACTCGTGTATATGCTGAAGAGATTTCCATTTATTAGAAGGCCACACAGTGGGAGTACAATGCgattctttgtttttctaaagtaGGGAAAGCTGTGGCCCGTGGGTTGGGGGAAGTAGGAACAGGGGAGTGTAGGAGCGGAGAAAGGGTGAGAGGAGGGTTACAAGAGGGGATCTGCACCTCTGCTGCCGGAGAGACTTCTGCATTGGTGATCCAGCTGAGGTTTCAACAACTGGATCCTTTCAACTCACTGACTTTACAAACTGCCCATACATCATGCTTGACAGagactctccaggaccagggctgcagacccACCCTGGGTAACAGCATAGGGGGAGAGAGGTTAAGGCACTGGTGTGAAGGGAGGATGGGGTCTGGGGATTTTGGGGGCTCAGGACGAGAGCTCCCTGGTCTTGGTGCTCTCTGACACCACCTTGCCATCCACCACTGTCTGCGTCACGGTCATCACTTTGGTCTTGGTGGTCTTCTGGTCTTCGAGAGCGTCCTGGAGCCTGGACACACGACAGGAGAGTGAGCATTCACCCGGCAGAAAGCTCACTTGGTGGCTTTTGCTGAGTCTCACCGGGCTAAATGATGGAGCTACTGACTGGTGGGTAAGCAGAGGTCAGTTTGTTATGTTCACTGGGTTTACAAAAGCCTATTCATCAGGTTGACTGATGCACTACTTCAAGCCAAAGAACAAATCTTCAGCACTTAAATGCTACTCTAAACCTATGTTTGTGTCAAATTTCCACTGACTAACTTCTCACCGCTCCACTAAACCAGACTGTGACAAACTACTGACAACAGTCAACACTATGTTACTACCCTGATATGAGTATAGTAAATCACAGAAGTAATTACCGCAGGAGACATGTAGACAGGGTAAAATCAGTAATACTGGGTAATGTTAAAACATCCAATAAGGCGCTGAAATATATACCATTCTGTTCAGGCAGATTGCATGCTGGGATGATTTGTAGGTGTGACTATTCTTGAAAAAGTGTAAATTCTCTCAAGGAGCTGAACCATATCGGATGATTATTCTGGTTCTGATTGCCCGCTCACCTGAAGTCCCCGCCATCCAGCAGGCGCCTGTATGTGGCAATCTCAGCCTCCAGCTTCATCTTGATGTTGAGCAGGGCCTCGTAATCCTGCCCCTGCTGCTGGATGTTGTGGCGCAGTTGTGTCAGCTCGGCCTCCAGCTGCAGGATGATGGTGTTGTACTTCTCCATCTCCATGTTGTTGCGTATCTCTGTGTCACGCAGTGCATCTTCCAGGGAGGCTTTCCATGCTCCTCTGGGACTCCAGCTCGATCTCCAGTGACTGGAACTGTCTGCGCAGCTCTGTAATCTCTGTCCGTGCTCCCTGAAGGGCCTCTGTGTTCTGGGACACCTGCACCTGGACCTCTGTGATCTGGGGAAGGAAGAAGATGGAGGTCATGTTTGGGGCCTTTGAGTTGAGGAAGAGAGCAGATCCCCTTATGAGCGAGATGTCTTTCTCAGGCTCTGATGCTGAGGTGTGGGAGTTCCACTGCATGTCAACATATACTCAATTTCAGCTCTCGTCAGGATTCTTGGTACCTGTTTAGGCAGAATTAAGTAAAAAATTGAAGGAATGTGAGGATGATAAGTGGTACCTGGCTTTCGTGCCAGGTTTTGAGCTCTTCCTGGCTCTGTAGCGCCATCTTCTCATATTTGGCCCTCATCTCGGCCATGATGTGCGCCAGGTCCTGTCCCTTGGGAGCGTCCACGTCCACCTGCACCCCGGACTGTGCGATCTGGTTGCGCATCTCCATCacctcctgcagagagagggggagagggacaTTGGTCAGACATGGTGCAATGAAATCAATCCTCATCCatggaaaaacatacaaaatgacaACTGTGTAAAATGACCACACTACAAATCTCACAATAGTAGTGCTAGTCATGTACGAGTTCTGTGTGGACTGATTTGGATCGCCACTGGAAAGGCAGCTGCAAGTCTTGGGATGTCTACTGGCgcttgtgtgtgcttgtgtgcgcTGGCTGGGCTTACATCATCGTGGTTCTTCTTGAGGTGGATAAGTTCCTCCTTCATGGCCTCGATCTCGCTCTCCAGGTTCATGCGGCCCATGTTGGTGTCGTCGATCATTCTCCTCAGCCCGACGATGTCCGACTCCACCGACTGGCGGATGGCCAGCTCCGACTCGAACCTGCAGCCATggaggggaaggagagagagtcagagagaggcCACAATCGATCAGACTATTGGAGAATGTCAATAGTCTAAACAACCAGAGCTAGACAATCTTGGATCTGCACTGTGTGCGTCCAAGCTTTCTGATATGGTGTTGGGCTGTACTGTGTGGCCTACGATCTTCT
>TU64130
CAAGCGACATAAAAAACAGGACTCGTGTATATGCTGAAGAGATTTCCATTTATTAGAAGGCCACACAGTGGGAGTACAATGCgattctttgtttttctaaagtaGGGAAAGCTGTGGCCCGTGGGTTGGGGGAAGTAGGAACAGGGGAGTGTAGGAGCGGAGAAAGGGTGAGAGGAGGGTTACAAGAGGGGATCTGCACCTCTGCTGCCGGAGAGACTTCTGCATTGGTGATCCAGCTGAGGTTTCAACAACTGGATCCTTTCAACTCACTGACTTTACAAACTGCCCATACATCATGCTTGACAGagactctccaggaccagggctgcagacccACCCTGGGTAACAGCATAGGGGGAGAGAGGTTAAGGCACTGGTGTGAAGGGAGGATGGGGTCTGGGGATTTTGGGGGCTCAGGACGAGAGCTCCCTGGTCTTGGTGCTCTCTGACACCACCTTGCCATCCACCACTGTCTGCGTCACGGTCATCACTTTGGTCTTGGTGGTCTTCTGGTCTTCGAGAGCGTCCTGGAGCCTGGACACACGACAGGAGAGTGAGCATTCACCCGGCAGAAAGCTCACTTGGTGGCTTTTGCTGAGTCTCACCGGGCTAAATGATGGAGCTACTGACTGGTGGGTAAGCAGAGGTCAGTTTGTTATGTTCACTGGGTTTACAAAAGCCTATTCATCAGGTTGACTGATGCACTACTTCAAGCCAAAGAACAAATCTTCAGCACTTAAATGCTACTCTAAACCTATGTTTGTGTCAAATTTCCACTGACTAACTTCTCACCGCTCCACTAAACCAGACTGTGACAAACTACTGACAACAGTCAACACTATGTTACTACCCTGATATGAGTATAGTAAATCACAGAAGTAATTACCGCAGGAGACATGTAGACAGGGTAAAATCAGTAATACTGGGTAATGTTAAAACATCCAATAAGGCGCTGAAATATATACCATTCTGTTCAGGCAGATTGCATGCTGGGATGATTTGTAGGTGTGACTATTCTTGAAAAAGTGTAAATTCTCTCAAGGAGCTGAACCATATCGGATGATTATTCTGGTTCTGATTGCCCGCTCACCTGAAGTCCCCGCCATCCAGCAGGCGCCTGTATGTGGCAATCTCAGCCTCCAGCTTCATCTTGATGTTGAGCAGGGCCTCGTAATCCTGCCCCTGCTGCTGGATGTTGTGGCGCAGTTGTGTCAGCTCGGCCTCCAGCTGCAGGATGATGGTGTTGTACTTCTCCATCTCCATGTTGTTGCGTATCTCTGTGTCACGCAGTGCATCTTCCAGGGAGGCTTTTGCTCCTCTGGGACTCCAGCTCGATCTCCAGTGACTGGAACTGTCTGCGCAGCTCTGTAATCTCTGTCCGTGCTCCCTGAAGGGCCTCTGTGTTCTGGGACACCTGCACCTGGACCTCTGTGATCTGGGGAAGGAAGAAGATGGAGGTCATGTTTGGGGCCTTTGAGTTGAGGAAGAGAGCAGATCCCCTTATGAGCGAGATGTCTTTCTCAGGCTCTGATGCTGAGGTGTGGGAGTTCCACTGCATGTCAACATATACTCAATTTCAGCTCTCGTCAGGATTCTTGGTACCTGTTTAGGCAGAATTAAGTAAAAAATTGAAGGAATGTGAGGATGATAAGTGGTACCTGGCTTTCGTGCCAGGTTTTGAGCTCTTCCTGGCTCTGTAGCGCCATCTTCTCATATTTGGCCCTCATCTCGGCCATGATGTGCGCCAGGTCCTGTCCCTTGGGAGCGTCCACGTCCACCTGCACCCCGGACTGTGCGATCTGGTTGCGCATCTCCATCacctATCATCGTGGTTCTTCTTGAGGTGGATAAGTTCCTCCTTCATGGCCTCGATCTCGCTCTCCAGGTTCATGCGGCCCATGTTGGTGTCGTCGATCATTCTCCTCAGCCCGACGATGTCCGACTCCACCGACTGGCGGATGGCCAGCTCCGACTCGAACCTGCAGCCATggaggggaaggagagagagtcagagagaggcCACAATCGATCAGACTATTGGAGAATGTCAATAGTCTAAACAACCAGAGCTAGACAATCTTGGATCTGCACTGTGTGCGTCCAAGCTTTCTGATATGGTGTTGGGCTGTACTGTGTGGCCTACGATCTTCT

Function

symbol description
krt18 Enables scaffold protein binding activity. Involved in Golgi to plasma membrane CFTR protein transport; intermediate filament cytoskeleton organization; and negative regulation of apoptotic process. Located in centriolar satellite; cytosol; and keratin filament. Implicated in liver cirrhosis. Biomarker of liver disease (multiple); non-alcoholic fatty liver disease (multiple); and primary sclerosing cholangitis.

NR:

description
keratin, type I cytoskeletal 18

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64129 True 2397 lncRNA 0.50 2 10801108 10803709
TU64130 False 2151 lncRNA 0.50 3 10801108 10803709

Neighbor

gene id symbol gene type direction distance location
AMCG00008751 krt8,LOC105023875,LOC107551542,LOC108411779,LOC107681390 coding downstream 29454 10764016 ~ 10771654 (-)
AMCG00008750 e3,LOC108429286,LOC106565226,LOC107705699 coding downstream 75932 10719492 ~ 10725176 (-)
AMCG00008747 NA coding downstream 138917 10655011 ~ 10662191 (-)
AMCG00008743 LOC103045919,LOC106565233,LOC102299085,LOC100696631,LOC102216220 coding downstream 311342 10472530 ~ 10489766 (-)
AMCG00008739 NA coding downstream 543257 10221420 ~ 10257851 (-)
AMCG00008756 NA coding upstream 154875 10958584 ~ 10972379 (-)
AMCG00008765 NA coding upstream 200447 11004156 ~ 11011571 (-)
AMCG00008763 pcbp2,LOC100691124,LOC103464415,LOC106956729 coding upstream 217839 11021548 ~ 11035727 (-)
AMCG00008761 NA coding upstream 234593 11038302 ~ 11044119 (-)
AMCG00008764 NA coding upstream 241254 11044963 ~ 11051426 (-)
G51243 NA non-coding downstream 127253 10668711 ~ 10673855 (-)
G51120 NA non-coding downstream 870006 9927245 ~ 9931102 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding downstream 890308 9909611 ~ 9910800 (-)
G51081 NA non-coding downstream 1061852 9738646 ~ 9739256 (-)
G51057 NA non-coding downstream 1222725 9577268 ~ 9578383 (-)
G51261 eif4b non-coding upstream 35397 10839106 ~ 10839672 (-)
G51344 NA non-coding upstream 253968 11057677 ~ 11140273 (-)
G51354 LOC100846954 non-coding upstream 359637 11163346 ~ 11164374 (-)
G51403 NA non-coding upstream 422778 11226487 ~ 11258218 (-)
G51574 NA non-coding upstream 1199216 12002925 ~ 12010394 (-)
G51250 NA other downstream 1954 10797632 ~ 10799154 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other downstream 82907 10670949 ~ 10718201 (-)
G51241 NA other downstream 88623 10675756 ~ 10712485 (-)
AMCG00008744 NA other downstream 197735 10560866 ~ 10603373 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other downstream 430792 10338325 ~ 10370316 (-)
AMCG00008777 dctn2,LOC102785932 other upstream 431933 11235642 ~ 11326359 (-)
AMCG00008815 NA other upstream 1797582 12601291 ~ 12605260 (-)
G51797 NA other upstream 2087102 12890811 ~ 12891597 (-)
G51799 NA other upstream 2091626 12895335 ~ 12897134 (-)
G51867 NA other upstream 2197117 13000826 ~ 13001888 (-)

Expression


Co-expression Network