AMCG00008739


Basic Information

Item Value
gene id AMCG00008739
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10221420 ~ 10257851 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008739
GTGTGAGACAGTGTCGGATATCCCGCACCTGCACCGCACAGCTGGCGGCGGGGCCTGGACATCAGAAAGGGAGCCGAGGAGGACCGGACGGGTCCTCTCTCGACCGACTCCGATCTCTTTAATATAAGCGCAATATTGAAGGCGCAGGAGCGGAGAGGCACCGGTCTTTCATGCTGCCCCTCACAGCAGTTTTGGCTCCAGTGACATCGACGGCACATGCAGCAAATGCACATGACGTATTGGATGGACACGGTTGCTTTGGTATCTTGAAATACTgcctttctgtttcattttttaggccgcgctttgtttaatgtatagaCGCGTAcatgcatataaatacatagcTTATTAACAATACAGTTCAATGTTTTAAGACAGACACGCTGTATTTTTTTGAAAAGATCCGACGCCACTCCAGAGTAGCTACTTCTCCCGCAGAATGCGTGCACACACCTCTCTATACATCAAAAGCAGAAAGGAAACCATCTTAAttgaaaactgcatttatttatacaaacagCCACACCTTTGacgatgcatttaaatattatttagagTCTGACTGGAATCCACCTCAGCGGAAAACAAACTTCAAAGAGCTCTTTTTGAAACACTGCTCCGTAGTTTCCTTTCATCTCTCCGGGCGAGACCCTGCGCAAATCGCAGGAAAGGTACGACTGCAATCTAAAACTTGAATTGAAAAGTGGCTAATTATACACCCCGGGGAAGTGTGACTTTTCTCCGCGCTGTGCACAGCCGAGCCCGGCTGTTTGTGTGCGGGTGGGGGACACGTGTGGGATGGAGGAGGCGGTGCTGTAGGAGCTCGTTTCGGCGGAGAGGGTAGACAGACGCCGCGGCGCTGCGAGCGGGAGACTGCCGGAGCTGGCGAGGATGCGGGCGCCCTGTCCCCGCGGAGGGTCCAAGCCCGGGCCGGGGCCGCTGTGACACGCGTCCGCTGTCACCCCAAGAGCTGCGGATGCGGGTCCTAAACACGGAGCAAGTGTTACACCGACGAAAAGGAGAAAAACGACaagagaaaatgcatttgtttcgGAGTCACTATTACCGAGTCTTCTCAGAGCGCTGCGCGCTGGAGACGGACAGCTCACCTATCCGTGGCATTAGCTGGACACCACTGCCAGAGACGCTAGATGCCCAGGACACGATGAGACAGTTTTTGTCCCAGCGTGTGCTGAAAGCAGGGAGGGTGCTGTACAGTGCCTTAATGGACCGCAGCCCTGGACTGATCAGGGACAGGAAGCACCACCTCAAGACCTACAGGCATTGCACCACAGGGAAGGAGCTCGTGGATTGGCTGATCAAGCTAAATGGCTTTGTCCAATCGCGGAGCCAGGCCGTGGGGATGTGGCAGGTCTTGGTGGATGAAGGGTTTCTTGTTCACGCAAAGCAAGAATTAAATTTCCAGGACAAAGACGCACAGTTCTACCGGTTCCTGGAGGCGGAGTTTGGAGTGGACCACACTGCCAATGAGAAGGACTCAGAGGAGGAGCTTCAGGAGGCTCTTTCGCTGTTGAGCCAGATGGGGCCTGATGCCCTTCTGACCATGATTCTGCGCAAACCGCCTAACCAGAGGAGTGCTGAGGACCTGGAGGTGATCTTTGAGGAGCTGCTTCACGTCAAGGCTGTGGCTCACCTGTCCAACTCGgTGCGGAGGGAGCTGGCTGCAGTGCTGGTGTTCGAGTCCCATTCAAAAGCAGGaactgtgtTGTTCAGCCAGGGAGACAAAGGGACATCCTGGTACATCATCTGGAGGGGCTCTGTCAACGTGATCACACTTGGCAAGGGCTTGGTCACCACACTTCACGAGGGGGACGATTTTGGTCAGCTGGCTCTGGTCAATGACGCCCCGCGGGCCGCCACCATCATCTTGCGCGAGGACAACTGCCACTTCCTGCGGGTGGACAAGCAGGACTTCATCCGCATCCTCAAGGATGTGGAGGCCAATACGGTGCGCCTGGAGGAGCATGGAAAGGTGGTGCTCGTGCTGGAGAAGAGCTCGGGCAACGAGCCGGCCAATCAGGGAGGCTCGGGAAATGGCAACAAGTATACTGTGATCTCCGGGACCCCTGAGAAAATCTTGGAGCACCTGCTGGAGGCAGTGCGACTGGACTCTAACTGCAACGAGCCTGCAGATTCCTGTGTTACTGACTTCCTGCTGACCCACTGTCCGTCGGAAGGGTCCGAGCTGGAGAAGGCAGCCTACTCGCTCAACAAGAAGCAGAAGATCATCCGCCTGGTCGGCCAGTGGGTGGCGCTCTACGGGCAGCAGCTGAAGCAAGACGCCACTGCGGTCGAGTTCCTGGAGAGCCTAAAGGGGGCAGTGCTGGGGGACTCGCGTCTGACCAGCATGCTGAGGGAACAGCTACAAGACCGGAGGAAAACCAAAgttaacaaccagttcGACTGGTTCTCCACTGTGGAGGAATGTGCGGGGAAGTGCCAGCCAATCAGAGCGCAGGATAAAGTGTTATATGAGATCTTTCGTCCTGAACACACCTCGGTGTCCCTGATGTTCCCAGTGGACGCCTCTGTGCAGGACCTGATGTCTTCGCTGGTCAAGCCAGGGGGAGACCATGTCTTGGTCAAAATGAACTCCTCTGGAGAGCGGGCGCAGCTCAAACTGGACACCACTGCTGTCTTAACATCCCTGGGGGTCAACGAGAGGCTGTTCCTCTGTACCTTGAGCCAAATGGATCAGCTGACTCCTCTGGCAGAACAGCAGGGGCCGGACCAGGGCACCATGGACATGCTGGAGCAGATGAGCTCTAAGGACATGGCCTGCCAGCTCAGCGACCATGACTGGGAGCTGTTTGGTGCCATGCATGAGGTGGAGTTGATCTATTACATATTCGGGCGTCAGAATTTCCGAGGAGCCACCACTGCCAACCTGGAGCGTTTTGTGCGTCGGTTCAATGAGGTGCAGTACTGGGTGGTCACTGAGCTCTGCCTGTGCACTGACCTGGCCAAGCGCGCCCTGCTGCTGAAGAAATTCATCAAGATCGCCAGCGTCCTCAAGGAGCAGAAGAATCTAAATTCGTTCTTCGCAGTGATGTTTGGGCTCAGTAACAGCGCTGTGCAGAGGCTGTCCAAGACCTGGGAGaGACTCTCAAACAAGACCAGGAGGATCTACTCTTCTTACGAGCGGCTAATGgaccccTCCCGCAACCACCGGGCCTACAGACTGGCCATCTCCAAGCTCAGCCCCCCCTACATCCCCTTCATGCCTCTCCTACTCAAAGATATGACCTTCATCCACGAGGGCAATAAGAACCATGTTGAAGGCCTGGTCAACTTTGAGAAAATGACGGTGAAGATTGTGCGGGAGTGCAGGAGCCAGCCATATGTCCCTGCCTCCCCTCAAAAAGGCCTGACTGACCGGGTCTTCCTGGAGACGACTGCAGTGCGAGTGTCAACCTATTCGGAGCAGTCGGTCAGTCTCCGCAGCCCCACCAGTGTCCGCCTGTACGTCCAGACCCTCAGGGTGATCGACAACCAGCGCAGACTGACCCAGCTGTCCCGTGCCCTGGAGCGTTAGGAAATccggcctgcctgcctgctgccTGCCGCCCCACCAGGCCTCGTGGGAGCCTTCAGCCGCAGGCCTCAGCCCAGGTTCACCTCCTTGCTGTACCAGTTTAGCCTTGATGTGCGAAGTGGGTGTGAAACAAGTCCTGCATCCTGAAGACTGCCTGTCCGAGCCTCACACTGAACACTTAAAAATGACCAGTGggcttatttttgtatgtttgttttcccctcaCTTTTTCCTGCACCATGGATGACTGTTTGGTGTTCTGGGTAATTTATTTCACCGGCCAAAGTGGGACTCTAACAACAAGGTGGACCCCACTGTGAATGAACACTAGCACCAAAAACTGGCACTGATGTCAGTTCCCACAGATAGCTATTTTTGATTTGGCCATGAGTCGGCCACGATTATGCAAACTGAGTGCCGCTTCAGATTCAAAGGCCAGTCTTATAAGACACACTCAATAATAGCTGCTCTCATCTTCCTGAGTGACCAGAGAGAGGTGGGAATAGAGAGTCTTACAAAGAGCCTGATTTAACATCTGAAGGATGGATCCACAGTCTTCAGCGCTGGTTCAGAACAAGcctttatacatgtatatatatttatagcacTTTTACACTGGACCACTTTGAGTCCAGCACAGGCAGCTCAACGGGTCTTGTCAACAAAGTCCATTGAATGAACAAACATCAGCACTGACGTATCGATGATTTGTAGCAGCCCTGTGCTCACTTGCTCTGTGTCTCTTGCAGTATTTCCTACAGGTATTCGAAACCCAACTCTCCGGTTTGTCAAGACTGATCTCTCCTAACAGGAGACGCCAGCAGGTCCCTGGAGGACGACAGAAAGGCACAGTTGTGAAAATGTGCAGCCGGCGTTCTACAGTGTGATGGGATATgccaatacaaaacacattttatgctCCACAGTTTCCACAGAAAAAGCTTGAATCTGTACGTCCCTCTTATTCCCATATGACACCagcttaaaatataaagaaatgtagAACATAGAGAgctttgaaattgtaatgttaTGTCTAGCACACTGTATGGCCAAGGATTTCTTTTATGTATTATGCAACCTATATAACTTTAATGTGGTTGCTGAAACTTTGTTCTATTGTACGTCACACCCAGGGGAATTTAAATCCCATTTAAGTGCCTAAAATTGAAGTCTTATTATACAGAATTATACTAAATTATACAGATCCCAGCTATAATTGAATCGGCAGCCTTGACATGAAGACATATACGCAGCACAAACCCACGCACAACAGCAGCCTGTGTTTGTGGGTCGTGTAGAGCGCCGAGAGAAGCTGGATGTTTGTATGATGGGAGAGCGCAGACGTGTGGAAGACGGCAGTAGAAACTGCACTGAGAGGGGA

Function

GO: NA

KEGG:

id description
K08014 RAPGEF3, EPAC1; Rap guanine nucleotide exchange factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008739 True 4943 mRNA 0.53 26 10221420 10257851

Neighbor

gene id symbol gene type direction distance location
AMCG00008740 NA coding downstream 28155 10183119 ~ 10193265 (-)
AMCG00008734 NA coding downstream 156086 10059303 ~ 10065334 (-)
AMCG00008731 asic1 coding downstream 186823 10015724 ~ 10034597 (-)
AMCG00008730 smarcd1 coding downstream 223329 9979487 ~ 9998091 (-)
AMCG00008732 NA coding downstream 246299 9970563 ~ 9975121 (-)
AMCG00008743 LOC103045919,LOC106565233,LOC102299085,LOC100696631,LOC102216220 coding upstream 214679 10472530 ~ 10489766 (-)
AMCG00008747 NA coding upstream 397160 10655011 ~ 10662191 (-)
AMCG00008750 e3,LOC108429286,LOC106565226,LOC107705699 coding upstream 461641 10719492 ~ 10725176 (-)
AMCG00008751 krt8,LOC105023875,LOC107551542,LOC108411779,LOC107681390 coding upstream 506165 10764016 ~ 10771654 (-)
AMCG00008756 NA coding upstream 700733 10958584 ~ 10972379 (-)
G51120 NA non-coding downstream 290318 9927245 ~ 9931102 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding downstream 310620 9909611 ~ 9910800 (-)
G51081 NA non-coding downstream 482164 9738646 ~ 9739256 (-)
G51057 NA non-coding downstream 643037 9577268 ~ 9578383 (-)
G51044 NA non-coding downstream 695733 9521354 ~ 9525687 (-)
G51243 NA non-coding upstream 410860 10668711 ~ 10673855 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding upstream 543257 10801108 ~ 10803709 (-)
G51261 eif4b non-coding upstream 581255 10839106 ~ 10839672 (-)
G51344 NA non-coding upstream 799826 11057677 ~ 11140273 (-)
G51354 LOC100846954 non-coding upstream 905495 11163346 ~ 11164374 (-)
G51008 NA other downstream 828193 9390843 ~ 9393227 (-)
G50788 NA other downstream 1561403 8656728 ~ 8660017 (-)
G50739 NA other downstream 1850090 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 1927066 8270324 ~ 8294354 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 80474 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 303015 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 413098 10670949 ~ 10718201 (-)
G51241 NA other upstream 417905 10675756 ~ 10712485 (-)
G51250 NA other upstream 539781 10797632 ~ 10799154 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_03779021_03796563 RAPGEF3 coding CI01000001 null 3777809 ~ 3796563 (-)