G51008


Basic Information

Item Value
gene id G51008
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9390843 ~ 9393227 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63794
TTCTCCTTCCTCCAATATTTACTTCAAGTAGAGCATGTACTCCATCTAGtgtttaataattgtaacagaaacatatttgatttaaaaaaaacgtaTGACACAGTAATGTAGTTATGTGATTACTAGTTTATCACATACAGAGTTCAGTCATATTAAACTGAGACCtactaaaaaaaactacattatcatccctttttttgttttgttttgttttgcaggactgtgtgtgtattaggCCCAGTATAAAGTACAATGCCAAAGTATTGGAATTGAAGATGTTTGCGATGCTCTGTGGTTTATCGTAATTGTGTCCAAGGTGCAGGTTTTAAAAGCACTGGGCTTTGTAGTTTACAGCAGAGTACTGTTTTTACACtggcaaacatttaaaacaaaaaggattcGTATTGGCcctttttaaagcaaataaactgGTTGTGCTAAACAGTCAGATTAATGTGTGTCAAGGTAGAGGGCAGTTGTGTGAAATGGGTCATAAAATAGTTCACTACTAAAATGGAACAGTGTGTGTGGTTCCCTGTCAAAGCTGTAGTAAATATTGGAGgatttttttacattgcatGTTGATTGTATGTTATTATGAAGTACCTTCTTCATAATAACATACAATCAACCAGATTGCTGGATCGGTCAGTTTGCTCTTGTAGATGTGACCCTCCTCCGATCTGAAAACGGAGTACTAAGCACCCTCTTCCCGTCTCTGCCAACACTAAAACCTTTATGACACATATCCATCCTTCCCGACTCAAAAATAGTCCCAGAACTCCCAGTGGACATTCTAATCAGAGCCAGTGTAACTGAGCCAGGACTGACCCAACTGTGCCTGGTGAAAGGAGGTGTGCTTATAGGAAGATTTCATTCCACTTAAGACACTGTAAACAGCTTTACACATTATAGGTGGATAATATGCAAAGCAGTAGAAAAACTGTAGACTCACAAAAACGTAGAGACCGCTCGTCTCTTGATTTCGTGTTCTAAGTGAAAAGCGCTGAGGGGGACGgagaatgttattattattattattattattattattattattactagcaTTAGTGTTAGTATGTGCACAGCTTTGGCACTGCCAGGCCCTGGTGCCATTCAAGCACTTGATGAGGTATTAACACACTGGGATGACAATGTCCAGCCCCGTCCACACGCCTCAATGTGCATCCATTTCCTTATTCATCCAACACGACAACAGAACCACTGGGAGACCGAACCATAGAAACCTCTGAAGATGTTACTTCTTTATCTCTGTAATTGCAACACTAAgtagattttttctttcttcatcttatatatattttttaaatgtgcgtATTTCTGGATAAAACCcacctacatttatttattattaatcattattattatttatcattattattataccattaATAATAGGCAACAAGCTTTTTGTAGGCTATTGTGCAAAACATCCGCAAAAAGTGAGAAGCTAAGCGTCCGAGGGCGGTGGGGCGCTCTCCCCTTCGAAGGCAAAGTGAGCCCCCTCGGGGGGCAGCCCCTCGGGACTTTGGGAGGGCCCCTCGAGGTGCCCGCTGTCGCCTTCAAGGCAGTTTTCAGAGACGGGCAGGACCAAGGTCTCCCCGGTCTCGTCCAAACCCCGGGGGCAGGGCTCCACCAGCTTGGCATCTCCTCCGCTGACCCCCCCGTTCCCATCTCCCTCCATCACACCACAGTCCTTGTACCCATTGGTCATCTCCTCCCCCAGTGCCCCATGAAGGCCCATGGATGCCGTCTCCATGGGGTCTATCTGATAGTAAACCAGAGAGGAGTCCTTCAGGAAGGCCTGGTGGTGGGGGCCCACCTGGTTCTCTGTGAAGCACAGGACGGAGGCGCCGGGGGGGAAGTCCCCCTGCACAATCACGGGCTCGGCCTCCTCCGGCGCCCCATCCATGCCTTCCTGGGATGGCATAAGGGGTTCAGGGAGCAGGCACATGCCCAGGGTGGCACCACTGTCTACCCCCTGCCCCTCCTCTTGCTCCCGCCGGCGCTCCTGTTCCTCGGCACTCTGCAGGTGCAGGACAGCCGCCTCATTCTCCCGGTCCAGGCTGTCCCGCTGGGCTTGGTACTCAGCCTCGCTCTGCTCAAGGCCTGGCTGGGTTTGTGCCGTGGCGTCCGGGTCCAGGGGGGCCGGGAGGGCGGCCTGGGTGGGCTCAGGAGAGGCCGGGTGCAGAGGCACGGCCAATTCAGGACCCTCGCAGCCACCCATCTGCCTCTTCTTCTCCAGGTCCAGCTTCATGATGGTGTGCAGGTAGTGGGTGCGAACCCGCAGGGGGTTGAACTCGATGCGTCCCGCCACATTCCCACAGCCATCCCGCGAGCAGCCGCAGGGGAACGACATCCGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63794 True 2385 TUCP 0.48 1 9390843 9393227

Neighbor

gene id symbol gene type direction distance location
AMCG00008709 dazap2,LOC106572518,LOC106567170 coding downstream 64124 9321577 ~ 9326719 (-)
AMCG00008703 NA coding downstream 103156 9283550 ~ 9287687 (-)
AMCG00008704 NA coding downstream 135189 9232126 ~ 9255654 (-)
AMCG00008702 NA coding downstream 161384 9223114 ~ 9229459 (-)
AMCG00008705 cs,LOC107707042,LOC107715034,LOC107671863 coding downstream 185451 9197433 ~ 9205392 (-)
AMCG00008713 NA coding upstream 20471 9413698 ~ 9417891 (-)
AMCG00008717 NA coding upstream 138606 9531833 ~ 9554934 (-)
AMCG00008719 NA coding upstream 169673 9562900 ~ 9565171 (-)
AMCG00008718 bloc1s1,LOC107573571 coding upstream 186162 9579389 ~ 9587169 (-)
AMCG00008723 NA coding upstream 347057 9740284 ~ 9757947 (-)
G51007 csrnp2,LOC106567166,LOC107594006,LOC107715040 non-coding downstream 682 9389784 ~ 9390161 (-)
G51006 NA non-coding downstream 1273 9389211 ~ 9389570 (-)
G51005 NA non-coding downstream 1795 9388824 ~ 9389048 (-)
G51004 NA non-coding downstream 2235 9388258 ~ 9388608 (-)
G51002 NA non-coding downstream 9089 9380751 ~ 9381754 (-)
G51015 NA non-coding upstream 16532 9409759 ~ 9410974 (-)
G51044 NA non-coding upstream 128127 9521354 ~ 9525687 (-)
G51057 NA non-coding upstream 184041 9577268 ~ 9578383 (-)
G51081 NA non-coding upstream 345419 9738646 ~ 9739256 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding upstream 516384 9909611 ~ 9910800 (-)
G50788 NA other downstream 730826 8656728 ~ 8660017 (-)
G50739 NA other downstream 1019513 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 1096489 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other downstream 1097357 8281215 ~ 8293486 (-)
G50710 NA other downstream 1121517 8269023 ~ 8269326 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 945098 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 1167639 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1277722 10670949 ~ 10718201 (-)
G51241 NA other upstream 1282529 10675756 ~ 10712485 (-)
G51250 NA other upstream 1404405 10797632 ~ 10799154 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G826152 LOC106572515 non-coding NC_048573.1 CM023227.2 60050713 ~ 60092582 (-)