G51057


Basic Information

Item Value
gene id G51057
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9577268 ~ 9578383 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63852
CTTAGGCTACGTAATGTTCAGATACTGTGAAGATCAGTTGGTTGGATTTCACACAAAGTGTAACCAAATTCAGGGGTCTATAGTGAGTAAAtgttatctttttctttttaattttaattcaatgtttcaTTTCCGAGCATCCACAATAGAACTTCTCAAAGTCTCCCTCCACTCTCACTATTGTTCTgaaagtaacaaaaacaaaaacaaaaactgggtTATATATCGATTGATTTAAAAGTCACCCTGCGAGTGTCAGATATAAAGTGCACCAGTTAAtccgccccctcccccctgaATTTCCACTTTGCAAGATGTGATGTGGAAGGGAAAGTGTGATCACACCTGGCTACAGCAGGACATTTGGACACGCAAGACTGAGCTCCTGTGAGACACTGTGAAAGCAAAAACAGCCACAGGAACAATGCCAACCAATGGCTAAGATAACTGGCATAGTACGTCCGTGGCACTGTTGTGTGTCAAGTGTTATTGTTCTACTGTGTGCTACATTAAGGGGGAGCTGTGAGGTAATGCTAAAAAGCGATTATAGATGCAGTTTATGTAACTAGACAATGTTCCTGCGAGGGGCAATTTAAGacttatgtacttatttaaGCTATgagtacattttgtttgtttcaagaCCTgattttgctttacattttacttGTAATTCAGAGATATCATGCCTAATAAggatgtaataaaaacaaaaacaaaaaaacattcccatAATAAGCCGTCAGTCAGCAGCACCCAAGACATGCTATTGGGTTGCAAAGCTTTCGTTGCACTTCTGAAAGTCACAGAGGCGGCAGTGGAGAAAGAAGAAGAGCACCATCTAAGAGTTTGAACCCAAGTCTGATCCTCTGATTGAAGGTTTGAAAAAAATTGACACTAATCAGCAAAATGTCCTCTGATTAGAATATTatcataaaaactaaaatactaatACCATGTCAGCACAGAAGCATGTCACAGACTGCCTTTGGAAGGGCTTTCGTAAGGTTTGAGGTTTGTGCAGTGTGACTCCTGGGCAAAATCGTCCTATTAAGAGACtcaataaatgcatttacatcTTAAAAAGGGGGTTTTGTATTCAGAACACTGCTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63852 True 1116 lncRNA 0.39 1 9577268 9578383

Neighbor

gene id symbol gene type direction distance location
AMCG00008719 NA coding downstream 12097 9562900 ~ 9565171 (-)
AMCG00008717 NA coding downstream 22334 9531833 ~ 9554934 (-)
AMCG00008713 NA coding downstream 159377 9413698 ~ 9417891 (-)
AMCG00008709 dazap2,LOC106572518,LOC106567170 coding downstream 250549 9321577 ~ 9326719 (-)
AMCG00008703 NA coding downstream 289581 9283550 ~ 9287687 (-)
AMCG00008718 bloc1s1,LOC107573571 coding upstream 1006 9579389 ~ 9587169 (-)
AMCG00008723 NA coding upstream 161901 9740284 ~ 9757947 (-)
AMCG00008724 NA coding upstream 187340 9765723 ~ 9794180 (-)
AMCG00008728 NA coding upstream 337802 9916185 ~ 9916748 (-)
AMCG00008729 NA coding upstream 338818 9917201 ~ 9920176 (-)
G51044 NA non-coding downstream 51581 9521354 ~ 9525687 (-)
G51015 NA non-coding downstream 166294 9409759 ~ 9410974 (-)
G51007 csrnp2,LOC106567166,LOC107594006,LOC107715040 non-coding downstream 187107 9389784 ~ 9390161 (-)
G51006 NA non-coding downstream 187698 9389211 ~ 9389570 (-)
G51005 NA non-coding downstream 188220 9388824 ~ 9389048 (-)
G51081 NA non-coding upstream 160263 9738646 ~ 9739256 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding upstream 331228 9909611 ~ 9910800 (-)
G51120 NA non-coding upstream 348862 9927245 ~ 9931102 (-)
G51243 NA non-coding upstream 1090328 10668711 ~ 10673855 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding upstream 1222725 10801108 ~ 10803709 (-)
G51008 NA other downstream 184041 9390843 ~ 9393227 (-)
G50788 NA other downstream 917251 8656728 ~ 8660017 (-)
G50739 NA other downstream 1205938 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 1282914 8270324 ~ 8294354 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 759942 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 982483 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1092566 10670949 ~ 10718201 (-)
G51241 NA other upstream 1097373 10675756 ~ 10712485 (-)
G51250 NA other upstream 1219249 10797632 ~ 10799154 (-)

Expression


Co-expression Network