AMCG00008744


Basic Information

Item Value
gene id AMCG00008744
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10560866 ~ 10603373 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008744
ATGCTGCTGTTGCCTTTGGTAACAGAgATTCCTGCAGAAGCCCGGTTGTCATCTGAAGGGCAACTAGAGCAACCGGTACAAACCAACTCCATGGAGCTCGGCATAGGAGTGTCCCGGGAGCAGATCCTGTCGGCGCAGTTCGAGTGCTACATGAAGATCCTGAGTGATCCACCATACCACGGAGAAGGCCCTTACTGTAACCGCACGTGGGACGGCTGGCTGTGCTGGTCAGACTACCCCCCTGGAACAGCCATGCAGCTCTGTCCCACTTACTTCCAGGACTTTGATCCCTCTGAGATGGTGACCAAGGTGTGCAACACAGACGGCCAGTGGTTCCGGCACCCTGAGAGCAACCGGACCTGGTCCAACTACACACTGTGCTCTGCCTACACTGGGCAGAATCTCAAGACAGCATACAGCCACTACTACCTGGCTATAATCGGCCATGGACTGTCAGTGGTGTCTCTACTCATCTCCCTGTGTATCTTCTTCTACTTCAAAAGTTTGAGCTGCCAGAGGATCTCTCTCCACAAGAACCTCTTCCTTTCCTTCATTCTCAACTCCATCCTCActGTCAGCTGCAAGCTGCTGCAGTTCCTCAACCTTTACACCAACAGCTGCAATTACTTCTGGATGCTGTGTGAAGGGATCTACCTGCACACCCTCATCATTGTGGCCGTGTTCGTGGAGGAGCAGAAGCTGTGTTGGTACTACATCCTGGGCTGGGGCTTCCCACTGATTCCTGCCACCATCCATGCTGTGGCCAGACTACTTTTCTACAACGACAAGTGTTGGATCAGTTCAGACACCCACCTCCTGTACATTATCCATGGTCCCATTCACGCTGCTCTGCTGgtGAACTTGTTCTTCCTGTTGAACATCGTCCGTGTCTTGATCACCAAGCTGAAGGTGACTCACAGCGCAGAGTCCAACACCTACATGAAGGCCGTGCGTGCCACTCTCATCCTGGTTCCTCTGCTGGGCATCCAGTTCGTGCTGGTGCCCTGGAGCCCCCAGGGCCGGATGGCACGCAATGTGTATGACTACATCATGCATATCTTCACCCACTACCAGGGAATAGTGGGATTAGTGGGCCGAGCACTGTGTGACATGAATTCGTTCCCCCTCCACCTCGGTTGCGCTGATTCAAGGAGGAAAGTGCAACTGGCAAAACTCTTCCTTAATGCTGCTGTACCCTCTTCCCCCCAGGTGCAAGCCACGCTAAGGAGGCACTGGATGCAGTACAGGGTGCAGAGTACTGGCCGACTGAAAGGGGGCGACTCGCACTCCAACTACCACACCGACTCCTCCATCACCGAGATGACCAGGGTCTCCCACAGCCAGGTCACCACAGACCCCCTGGAAAAAACACAGCCGAAGAACGGGACCCACAACACTACCAATGGCCAGAGCAACGGCAAGCACTGCTCTGTAGTGCAGAGGCCTTTGCTGAAGAAGCCAGAGACCACCGTCATCTGA
>TU64089
AACCCTTTCGCTCCGAAGCCGACTGGAGCGCCAGTGAGAAGTGCGGTCAGTGCGGTGAGTGTGCGGCTGTCCCAGTGGACAGGGCtattgaagaagaagaagagactTATTTAAATCGGGACGTGTGCGAGCAGCGAATCAGAGGTGTCAACGAAAGCCACGACGtctaattaaaaaagtgaaaacggAAGACAGGTAGTGTAGCCTACCTTAGTGCGCATTTGCGAGCAAAATTAAGCCCAGTCGATGGACAGGCAGGTCTCACATCGGGAGAGATGTAAAGCGTGCGTTTGTGACGATTGAAAGACGAGCAGCGACTCCGCAACATCACCCATAAACACTGAGGAACTGTGGAATCGGGACCGGGAGACTCTGGATTGCACTGGCATTGCACTGGTTGCACTGGTTGCACTGGTCACTGGGAGTCGCGCAGAAAGGCTAGGGAGACATCGCGCCTGGAGAGGATATCCGTGGAAGGACTGAGGCTGACGGGGATATTACACAGACCGCCTGTCACTGGGAAAGGATGAAAAGACACCACTATTAAACGCCACTGGGTTAGGAGGTACATTTTTAGCGCACACAATTCACCAGAAGTGTGCTGATGTTCCCCTCTGCCTCTCGGAGCCGGTGTTAATAAAGCCATGGGGAGGGCGCACATCTTCTGGATGCTGCTGTTGCCTTTGGTAACAGAgATTCCTGCAGAAGCCCGGTTGTCATCTGAAGGGCAACTAGAGCAACCGGTACAAACCAACTCCATGGAGCTCGGCATAGGAGTGTCCCGGGAGCAGATCCTGTCGGCGCAGTTCGAGTGCTACATGAAGATCCTGAGTGATCCACCATACCACGGAGAAGGTGAGACTCCACACGGATACAGTGTGCCACATCTACAGCAGGATGGCCTAGCATTATCCTTGCCAAAGCCCACTTCACCTCCTATGCTTCAAGGTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008744 True 1479 mRNA 0.54 12 10560866 10574901
TU64089 False 953 TUCP 0.53 3 10573483 10603373

Neighbor

gene id symbol gene type direction distance location
AMCG00008743 LOC103045919,LOC106565233,LOC102299085,LOC100696631,LOC102216220 coding downstream 71100 10472530 ~ 10489766 (-)
AMCG00008739 NA coding downstream 303015 10221420 ~ 10257851 (-)
AMCG00008740 NA coding downstream 367601 10183119 ~ 10193265 (-)
AMCG00008734 NA coding downstream 495532 10059303 ~ 10065334 (-)
AMCG00008731 asic1 coding downstream 526269 10015724 ~ 10034597 (-)
AMCG00008747 NA coding upstream 51638 10655011 ~ 10662191 (-)
AMCG00008750 e3,LOC108429286,LOC106565226,LOC107705699 coding upstream 116119 10719492 ~ 10725176 (-)
AMCG00008751 krt8,LOC105023875,LOC107551542,LOC108411779,LOC107681390 coding upstream 160643 10764016 ~ 10771654 (-)
AMCG00008756 NA coding upstream 355211 10958584 ~ 10972379 (-)
AMCG00008765 NA coding upstream 400783 11004156 ~ 11011571 (-)
G51120 NA non-coding downstream 629764 9927245 ~ 9931102 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding downstream 650066 9909611 ~ 9910800 (-)
G51081 NA non-coding downstream 821610 9738646 ~ 9739256 (-)
G51057 NA non-coding downstream 982483 9577268 ~ 9578383 (-)
G51044 NA non-coding downstream 1035179 9521354 ~ 9525687 (-)
G51243 NA non-coding upstream 65338 10668711 ~ 10673855 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding upstream 197735 10801108 ~ 10803709 (-)
G51261 eif4b non-coding upstream 235733 10839106 ~ 10839672 (-)
G51344 NA non-coding upstream 454304 11057677 ~ 11140273 (-)
G51354 LOC100846954 non-coding upstream 559973 11163346 ~ 11164374 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other downstream 190550 10338325 ~ 10370316 (-)
G51008 NA other downstream 1167639 9390843 ~ 9393227 (-)
G50788 NA other downstream 1900849 8656728 ~ 8660017 (-)
G50739 NA other downstream 2189536 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 2266512 8270324 ~ 8294354 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 67576 10670949 ~ 10718201 (-)
G51241 NA other upstream 72383 10675756 ~ 10712485 (-)
G51250 NA other upstream 194259 10797632 ~ 10799154 (-)
AMCG00008777 dctn2,LOC102785932 other upstream 632269 11235642 ~ 11326359 (-)
AMCG00008815 NA other upstream 1997918 12601291 ~ 12605260 (-)

Expression


Co-expression Network