G51354 (LOC100846954)


Basic Information

Item Value
gene id G51354
gene name LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11163346 ~ 11164374 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64280
ttgttggcaatcacagaggtcagacgtttcttgtagctggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggcaacttgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctggctgagggaagtaggttctcacccaagatttgacggtacatgaccccgtccatcgtcccatTGAtacggtgcagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctcgattttggtctcatctgaccacaacactttcacccagttctcctctgaatcattcagatgttcattggcaaacttcagacgggcctgtacatctcatgatcattgaaactccacgaggtgagatcttgcatggagatcttgaataatcgcaccaactgttgtcaccttctcatcaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacgagctgagattagga

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64280 True 871 lncRNA 0.49 2 11163346 11164374

Neighbor

gene id symbol gene type direction distance location
AMCG00008767 NA coding downstream 19985 11134186 ~ 11143361 (-)
AMCG00008762 NA coding downstream 89755 11062287 ~ 11073591 (-)
AMCG00008764 NA coding downstream 111920 11044963 ~ 11051426 (-)
AMCG00008761 NA coding downstream 119227 11038302 ~ 11044119 (-)
AMCG00008763 pcbp2,LOC100691124,LOC103464415,LOC106956729 coding downstream 127619 11021548 ~ 11035727 (-)
AMCG00008772 NA coding upstream 45812 11210186 ~ 11221258 (-)
AMCG00008773 NA coding upstream 69118 11233492 ~ 11250237 (-)
AMCG00008776 NA coding upstream 171402 11335776 ~ 11348560 (-)
AMCG00008780 LOC107566399 coding upstream 243295 11407669 ~ 11417859 (-)
AMCG00008779 NA coding upstream 296830 11461204 ~ 11474304 (-)
G51344 NA non-coding downstream 23073 11057677 ~ 11140273 (-)
G51261 eif4b non-coding downstream 323674 10839106 ~ 10839672 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding downstream 359637 10801108 ~ 10803709 (-)
G51243 NA non-coding downstream 489491 10668711 ~ 10673855 (-)
G51120 NA non-coding downstream 1232244 9927245 ~ 9931102 (-)
G51403 NA non-coding upstream 62113 11226487 ~ 11258218 (-)
G51574 NA non-coding upstream 838551 12002925 ~ 12010394 (-)
G51588 NA non-coding upstream 916838 12081212 ~ 12093785 (-)
G51634 NA non-coding upstream 1178766 12343140 ~ 12343342 (-)
G51674 NA non-coding upstream 1274377 12438751 ~ 12439523 (-)
G51250 NA other downstream 364192 10797632 ~ 10799154 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other downstream 445145 10670949 ~ 10718201 (-)
G51241 NA other downstream 450861 10675756 ~ 10712485 (-)
AMCG00008744 NA other downstream 559973 10560866 ~ 10603373 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other downstream 793030 10338325 ~ 10370316 (-)
AMCG00008777 dctn2,LOC102785932 other upstream 71268 11235642 ~ 11326359 (-)
AMCG00008815 NA other upstream 1436917 12601291 ~ 12605260 (-)
G51797 NA other upstream 1726437 12890811 ~ 12891597 (-)
G51799 NA other upstream 1730961 12895335 ~ 12897134 (-)
G51867 NA other upstream 1836452 13000826 ~ 13001888 (-)

Expression


Co-expression Network