AMCG00008779


Basic Information

Item Value
gene id AMCG00008779
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11461204 ~ 11474304 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008779
acaaaatcaaaacatcgACCATATCACAGTTTCATTTCTACTACttacaaatcaaaatgtgatagGCTACAAATTTGTTATTTGCAATTCGCCGGTTTTCTTTAGGTCTAACCTTTAGTCGTATGCCATAAGtgtatagaaatgtatgtttgtgcaATAAGTGATTCATATAGCTCCAAACTGATTGGCTGTATTTGGTCCTCCAGGGCTTGACAGCGGTATCCCAGGATTCCAAGCTCCAATGCCAGTCGACATGCAGCCTCACCAGGGCCTGTATCACTACGAGTCTGGCCCCAGTCAGCCAGCCAGGGGCAGCCAGCCTGCAGATGGTAGGACAATGTACAACCCCATGCCCCCTGCTATGACTCCGGGCACCTGCATGGACCCCTACCTGCGGCCGCCCCATGGACACCCCTCGTCGAGCATGATGGGACATCGCGGCCTGCCTCCCGCCGAGGGGGGTAATGGAGGTCCATACTGCAATCAGAACAACCTGATGGCCACTCACCATGGCTTTGGGATGAACCCAACTGGCAATGAACACATGGGCTCTATGGATGGCTCTCGGTTCTCCACTCCGCGGTCCATGCTGAAGCTCAGTAAGAAGCGCGCTTTGTCCATCTCTCCCCTCTCGGACGCCAGTATGGACCTGCAGACCATGATCCGCACCTCGCCCAACTCCCTGGTGGCCTTCATCAACTCCCGCTCCAAACCTCAGAGTTCGATGTTCAGCCCCGGGCCCCCCCTCGGTCACCCTCCTGGGTCCTGCCACCCGCCCCCCCCACGCCTGCTGCCCCACAACCCTCGGCTACATGGCCCTCCGAAGCACTGCCACTTGAAGACAGAGCCAGTGATGGGCGGTTCTCTGGAGAGCCTGAGTGTGAAGGGCCTGGAGGACAGATCGGAGGGGGACGTGCCCAGCCCCTCTTCCACAGGGACACAGGTAGAGCCGCCCCCCGGTTCACGTGACCCTCTGATGGGGATGCTGGATGGACGGGAGGACCTAGACAAGGAGGATGGGAAGCCAGAGCCTGAGGCCATTTACGAGACCAACTGCCATTGGGAGGCCTGCAGCAAAGAGTTTGACACACAGGAGCAACTTGTACACCACATCAACAATGAGCACATCCATGGGGAGAAGAAGGAATTTGTGTGCCACTGGCAGGACTGTTCACGGGAGCAGCGCCCCTTCAAGGCACAGTACATGCTGGTTGTGCACATGAGACGACATACCGGTGAAAAACCACACAAATGCACTtttgAAGGCTGTAACAAGGCGTACTCTCGCCTGGAGAACCTGAAGACACACTTGCGGTCCCACACTGGGGAGAAGCCGTACGTGTGTGAACATGAGGGCTGCAACAAGGCCTTCTCCAATGCCTCGGACCGGGCCAAGCACCAGAACAGGACCCACTCCAATGAGAAACCCTACGTGTGCAAGATCCCCGGCTGCACCAAGCGCTACACTGACCCCAGCTCGCTCCGGAAACACGTCAAGACCGTCCACGGCCCCGAGGCGCACATCACCAAGAAACACCGCGGGGACACAGGCCCCCGGCCCCCGGGAACCAGCCTGCCCCCTTCAGGACTGGGCCAGGAACTGcacctggagaaggaggagagccGCAGGGAGGACTGCAAACTGCTCGTACCGGACACCTCACTGAAATCCCAGCCCAGCCCGGGAGGCCAGTCCTCCTGCAGCAGTGAGAGGTCACCACTAGGGAGCGCCAACAACAACGACAGCGGAGTGGAGATGAACGCTAATGCAGGAGGCAGCCTAGAGGACTTGACTGTGCTGGAGGAGGGCGTGGCCAGCGACAGCGTGGGCACAGCGGGCATGTCTGCCCAGGCCCTCAAGAGGCTGGAGAACCTCAAGATCGACAAGCTGAAACAGATTCGCCGGCCCACGCCCCCCAACCGCAACGCCAAGCTACCGGCCCTGGCTGGTAACCAAGGGGAGATGCTGTCCCTGTGCGGGCCGTCGCCCATGCTGTCGAACCGTCGCGTGATGGAGCTGTCCAACACAGACCTGGGGGCCCCAGGGCCGCACAACGAGCGCCGCAACAGTGGGACCAGCAGCGTGAGCTCCGCCTACACTGTCAGCCGCCGCTCCTCCCTCGTCTCGCCCTACCTCTCCAGCCGCCGCTCCAGTGATGTGTCCCTGATCGGAGGACATCCCCAGAACATCCTGGGCAAGGACACTGGGGACCCCAACTCCCCTGAATCCAGCCGGAGATCAGGGGTGTGCAGGGGAGGGACAGGGGGGCTGCCAGGCCTCCCAAACCTGACCCCTGCACAGCAATACAGTTTAAAGGCCAAATATGCAGCAGCCACAGGTGGGCCTCCCCCAACACCTCTACCCAACATGGAGCCCCCCGGGCCCAACCCTAGAATGGGGTTCATGAGCGAGTTCCACGGCCAGCCGCTGCCCCCATTCTTACAGCAAGGGGTCAACCGCAGGAACAGCGCCAATGACTACAGCAGTTACGGGACAGGCATCATCCACCCGCACCAGGCACCAGGCAACGTGGCGCGGAGGGCCAGTGACCCAGTGAGGTCTGGGGCCGATCAGCAAGCTGTGCCCAAAGTCCAGCGCTTCAGCAGCCTGAACAACGTCAACATGCCCATGATGGGCCGGAGGAACGCCACCACTGGCACCCTGCAGCATTTCGGAGGGTCTGAAGCCAACATTTCCCGCCATGTGTACTCGCCTCGTCCCCCGAGCATCTCTGAGAACGTCATGTTGGAGGCCATGGCAACAATGGAGCCCTCGTCTGCCAACAACCAGCCAAGGGATCCGAACATTATGATGAATCCCGGTGAAGGCATGGGATACATGGGTTACCCCCAGGGATCTAGCCAGCTGTCCCCTGGTCACGAGAACCTAAACTGCAACGAGCGTGGCTACCCGGCCGTGGGAATGCAAGGGCTGTTTCACAGCCAGCGCAGGGATATGGGAAGCGCACAGGTGGACGTCATCCATCAGGGGGGGATGAGCACCATGATGCAGCAGGCGGAGTATGGGTTGAACACCTGCCAGTTGAGCCCCTCTGGCCCTCAGTACACAAACATGGGACCAATTAATGCTAACGAGAGCCTATCAGGACAGTGGGGTGAGCAAAACCCAAGCGTCGTGACCCAACACCAGAACCCACACGGGCTGCAGCCGGCCATGGTGGCGGGCGCTGGGCAATATCAGGACCACAGGTCTGCAATCCAGCACCCACCGCAGAACCACAGTGGTCTAACCGTGTCTAATGCTGGCCACAGCCAGCAGGCCATGTTTAACAACAACACGCAGAAAGTCCCGCCTCAGCAGGCTATCAAGCCTGAGCAGCAGTTCCACCAGTCCCTCCAGTCCTCGAATGCCTGCCAGAACATGAAGCAGCAGCCCATGCCTGCTCCACAGGGCTATGGGCCGCCAGggcagatgatgatgatgaggccGGGAGCCGCAAGCTGTGAGTTCCAAGGGCAGCTGGATAACCAGCAGCCAGTGGCCTTCCCCAGCACAGGTATGGGCTCCTCTGGGATGGTGTGTGGGTCACCCCTCCGGGACGGGCGGCGCTCCCAGACCCCCATGATGCAGGTGAAGGAGATGATGGTGAGGAATTACGTGCAGTCGCAACAGGCACTTATGTGGGAGCAGCAGCAACACCAGCAAGAGCGGAGTGAGATGGGCATGCCTCTACCTCCCCCGCAACCCCCACTGGTGGACGGCATGGAGATGGGAGGCTCAGTCCAGATGATGCAGCACAGCCCCCAGCAGCAGCATGcttacagcagcagcaactaCATGGGCTACCAGAACCAGAACCTCATGAGTCCGTCACACAACGGGGGAGCAAGCTCCATTCAGTCCAAAGACCTACTGAGCCCCAACAGCCAGTGCTACAGCCAGGACCTCGTGCCCAGACCCCCACAGGGGCGCAAACCTATAAGTCGACAGAACAGCCAGACCCATCAGCCCGGGTACCTGGGCAGCCCTCCTCACCTCAGCCCTGGACATGAGACCTCCACCAGCCCCAGGAGGAATATCCGACTGCCTCCCGTGCCACCGCATCCTGAGCTAACCCCGGGCCCCCCTCCgggcagcaacaacaacaccatCTCCAACACTATGTATTACTCTGCGCAGATCCAGATGCATCCAGATATGGGGAAACAGCTGAGCAGGCAGGACTCCCAGCAAGGGATCTGCATGAGCCAGCCGCACTTGGGCCAAATGGATCAAAATAAGTCTGCGTCTTTAGCATACCCTGAACCTGTCCAGATGTCCAATGCTCTAGACAACCTGGACCTGGAGAATGCGCAGATAGACTTTGCTGCCATTATTGATGACTCGGACCCATCCTCTTCCATGATGCCGGGGTCCTTCAGTCCGCACCCTCTCCAGGGCTCCTCCCAGACATCCTCTCGCCTCACCACCCCACGCAACTCCCTCACACTGCAGTCCAGCCTATCCAACATGGCTGTGGGCGACATGACTTCCATCCTGACCTCTCTGGCTGGGGAGAACAAATATCTCAACACCCTGTCGTAGAAAAAAGGCAGACCTCGAATCTGAGAAACGTACGTGCACAAACACATTCCCCTCCCTGCATTAAATACACTGTCTCAGAAGCCAAAGAATAGGTGCCATTTGGACACTCTCTCACACGGCTTCAAAGAGGAACTGATTTTTGTCAAGACTACTAAGTTGTTGCTTGACGGTTGGTAGACCTTGACGCCTGGTTTGGTCTCAAGGTGATGCAACCAAATCCTGCCAAATCATGGCAGATAAAAGAGACAGGAATGCAGGAGGGGCTACaaagtttacattttgtgtaaatAGATATGCTGTGTATATGTAGAAGCTACCAGTGCAGACATTGACGAGCACAACTTCCGTTCTAcacaatctgtttttttatcatcattataaaagaaaaacatttcagaaggtAAGGACTCCTAATAAGAATTCACTTTTGAAACTGTTGGGTAAATATTTGAATGGGCTGTCATTGAGAAGAGTCACAGCAAtggcaaacagacaaaaatcaGCTTCTAATATTGTCCCATGGGAATATCCCAGAGCATCATTTATAGCACTAGGACACGTCCAAACGGAGttggagaaaataaagctttggGATCCACACCAACATCTCGGCTAAATCCACAGGTGTGATGGGATGAAGCAAATCCTCTACGCCAGTATATTTTCCGTGACAGCTCTTCAGTGCAGGAACATAACTGCCGGACTCACAAAGAAAGCATGCATAGAAAGCTGCATATTTCAAGAGTAAGTGCCTTTGACTTCCATTGATGCATCCAGCAATTTGTGGTCTACCTCCATCTGTGCCTACATGACAGACAATCCTGGACAATACAATGTCAGGTGCTCCAGCtatgagagggagaggagtggTGCACACAGAGACTGTAACCCAATAACAGCATGTCACATGGTGGACACACATCGTGTGCAGTGACTCGGTTACATTTCAGCTGCTTTGTAACATTCATTGGACAAAAACagtattgattaaaaaacaaagtgaaatttCCTAAAAGAAACACTGTTCAAGGTGATTGCCCCCAAGACTGAGGTCTGAAGAAGTACTATGTACAAAGCACCGTGTTTGGCTGTAAATATAGACCAGGCCTCGAATTCCCCTTCtgaagagagaaagacagcCTCAGCATTTCAGATGGATTCTCCTGAAATTTCATAACTGTGTCATGTTTGTACTTtgcatgtttcatgttttaaagtgaCAGCAGGAAACTTTACCCAAGGCCATTTCTGCCGAGTGTTCATTTCTTCCCCGCAACAAATCACAGTGGCAGTTGTCTGCCCCAACCCCTTTGCCTTAAACCACTGCACAGTGAGTCTGCTGATTGGCCCATTCGACATCATGTGACGCATCAGACAGACTCTCTTCTTTAGGCATTCAGTTGTGGAAgcatggaagaaaacaaatatatttctttagcAGTATTCACAGCATTTACCACTGtgctatttgtttgtttgttttgcttgtacTATAAACAGACACAATAAGGGCTTGATTAAAAAAACGTATCCTAATTACCTCGagtttaaatacacacatccTGCAATTGCTTTACAAAAGCTAATGCTAGAAGCACAGCTAGTGTACTCAGAACTGCGTCCTGTCTTTCAGAAGGCTTCACGGACCATTCATCCATCTCTTGCTGACAGTTGATTTCTAATTGTAATCTTCtagagcagttttttttttttttt

Function

GO:

id name namespace
GO:0021521 ventral spinal cord interneuron specification biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0042476 odontogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0045880 positive regulation of smoothened signaling pathway biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0021508 floor plate formation biological_process
GO:0035301 Hedgehog signaling complex cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K16799 CI; transcriptional activator cubitus interruptus

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008779 True 6262 mRNA 0.54 12 11461204 11474304

Neighbor

gene id symbol gene type direction distance location
AMCG00008780 LOC107566399 coding downstream 43345 11407669 ~ 11417859 (-)
AMCG00008776 NA coding downstream 112644 11335776 ~ 11348560 (-)
AMCG00008773 NA coding downstream 210967 11233492 ~ 11250237 (-)
AMCG00008772 NA coding downstream 239946 11210186 ~ 11221258 (-)
AMCG00008766 NA coding downstream 289276 11150919 ~ 11171928 (-)
AMCG00008781 NA coding upstream 73707 11548011 ~ 11551118 (-)
AMCG00008785 shmt2,LOC102307393,LOC101478662,LOC103359782 coding upstream 240358 11714662 ~ 11728170 (-)
AMCG00008786 NA coding upstream 272768 11747072 ~ 11754413 (-)
AMCG00008788 LOC106565466 coding upstream 325857 11800161 ~ 11878186 (-)
AMCG00008789 lrp1,LOC103376578 coding upstream 407706 11882010 ~ 11895463 (-)
G51403 NA non-coding downstream 202986 11226487 ~ 11258218 (-)
G51354 LOC100846954 non-coding downstream 296830 11163346 ~ 11164374 (-)
G51344 NA non-coding downstream 320931 11057677 ~ 11140273 (-)
G51261 eif4b non-coding downstream 621532 10839106 ~ 10839672 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding downstream 657495 10801108 ~ 10803709 (-)
G51574 NA non-coding upstream 528621 12002925 ~ 12010394 (-)
G51588 NA non-coding upstream 606908 12081212 ~ 12093785 (-)
G51634 NA non-coding upstream 868836 12343140 ~ 12343342 (-)
G51674 NA non-coding upstream 964447 12438751 ~ 12439523 (-)
G51693 NA non-coding upstream 980615 12454919 ~ 12476199 (-)
AMCG00008777 dctn2,LOC102785932 other downstream 134845 11235642 ~ 11326359 (-)
G51250 NA other downstream 662050 10797632 ~ 10799154 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other downstream 743003 10670949 ~ 10718201 (-)
G51241 NA other downstream 748719 10675756 ~ 10712485 (-)
AMCG00008744 NA other downstream 857831 10560866 ~ 10603373 (-)
AMCG00008815 NA other upstream 1126987 12601291 ~ 12605260 (-)
G51797 NA other upstream 1416507 12890811 ~ 12891597 (-)
G51799 NA other upstream 1421031 12895335 ~ 12897134 (-)
G51867 NA other upstream 1526522 13000826 ~ 13001888 (-)
AMCG00008845 NA other upstream 1616233 13090537 ~ 13097934 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021215 glis2a coding NC_007133.7 CM002906.2 26524760 ~ 26558166 (-)