AMCG00008763 (pcbp2,LOC100691124,LOC103464415,LOC106956729)


Basic Information

Item Value
gene id AMCG00008763
gene name pcbp2,LOC100691124,LOC103464415,LOC106956729
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11021548 ~ 11035727 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008763
CTCcatctctcactgtctctcttcCCTTCTCCCCGGCTCCTTTTTAAACTCTCCCCCTGGGTTTTTTACCCACCCGAACCTCTCCCCTTCTACCCTTCAAACCCTACCCTCCCCCCTGAACACCTTTCAAGGCACGAAACAgATTCCATTCTTGTGACCAAAGACACCAGTTCTTCTTGACCAGCCTGACCCTATCCCTGTCACTACTTCAACATGGACTCCGGTGTAATTGAAGGAGGACTCAATGTCACCCTCACCATCAGACTGCTCATGCATGGCAAGgaagTTGGAAGCATTATTGGCAAGAAAGGAGAATCTGTGAAGAAGATGCGAGAAGAGAGTGGTGCACGCATCAACATCTCTGAAGGCAACTGTCCCGAGAGGATCATCACCTTAGCTGGACCCACGACTGCCATTTTCAAAGCCTTCTCCATGATCATTGAGAAGCTAGAAGAGGATATCAGCAGCTCCATGACAAACAGCACGGCCACCAGCAAGCCTCCTGTGACTCTGCGCATCGTGGTGCCAGCCAGCCAGTGTGGCTCCCTCATTGGCAAGGGCGGCTGCAAGATCAAAGAGATCAGAGAGTCCACGGGTGCCCAGGTCCAGGTGGCTGGCGACATGCTGCCCAACTCCACGGAGCGTGCCATCACCATTGCGGGAACCCCCCAGTCCATCATCGAGTGTGTGAAGCAGATCTGCGTTGTCATGCTCGAGTCTCCTCCAAAGGGTGTGACCATCCCTTACAGACCCAAGCCATCCGGCTCTCCGGTCATCTTTGCTGGTGGACAGGCTTATTCTGTTCAAGGACAGCATGCCATTGCCCAGCCAGATCTAATTGGATGCATCATTGGTCGCCAAGGCGCCAAGATCAACGAGATACGCCAGATGTCCGGCGCACAAATCAAAATAGCCAACCCCGTGGAGGGCTCCTCCGATCGCCAGGTCACCATCACAGGCTCCCCGGCCAGCATCAGCCTGGCAGAGTACCTCATCAATGCCAGtgTAGAGTCTGCTAAACCTTCCTCGATCCCTGAGCCGCACCTCAGCATGAGCCTCTGTCAGCCCTGCCCCccctctactactactacttctaccactccttctcctcctcctactactactgctacctcctcctcctcttcctccttctctgtGGTGTCTTCCCCAGCCTCCATCACCCTCTCCTCCCTGCTGGCTCCGGGCCCCCCCTcctcagcctcctcctcctctgactCCCTGCTCCCCAGCTCCCCAGTCTGTGTCTCCAGTCTGCTTGGCATGAAACCTGTTCCTCTGCTGGCCCTCAATGTTGTTAGCACGCCCGCCAAGGGCCCAGCGGCGCCCACCGCCGCCACTGTGCCACCTGAAAATGCGGGCACGTCTGTCCCCTGTGCCACTAACAAACTGAGCTCTTCCGATCTGGCCTCCAAGTCCAAGAAAAGAAGGCTGTCTCCGTATTAAGGCCCATTCTGTTAAAAACAACCTCTGGTCCCTATTCACCCTGTATTGGATCCACTCTGCTTATGGCTTCAGTCTCCTGTATTGAACTGCATCCCAgttttttcatttaacttttttcaccCATGTTCCCCCACCTCACGTTTTTTTAACTGACTAACcatctacattttttaaattatatttattgaatttggtGTTCGGACATTTAATTGACCATGCTCATCTCCGCAATGAAATATAATGCTGGACGAagaaggcttttattttttacaaatttgGTTGCAAGTGGCAACAGCCAGTGCCTGAATCTTGCTGCGGAATGGCCTTGCTAATTATCAAGCACGTAACGCCTGTGGAGTGAGGAGTAGCTCATCTGCATTTATGTACCATGGACTTCAGGGCTGGATGTTTGTCTGGATATTGGTCTCAATAAACATTTGACTGAATCTTActgtgtggtggggggaggggggtatttctttatttgaagtgtattataatttataaatgggATTTTAGCCCTTCGTGGTTTTCCAGCAGTTGGGGTAAATCTCTCCTGGCAAAGCAGTCATTCTGCGGAGCTCACTCCACCCTGCAGTGCCAAAGAAATCGGTTAATCAGTGTGAAAGCATGGCCTTAAAGCCGGAGTTCCCCTAGTACAGCTGCAAAGGggatacaatatattatacaacttatacaaacaaacatttcccaCATATCAATACAAGGAAAAAGCCTtattgcagattaaaaaaaaaaactaaacacctGAAATCACTGAAATCCCAATTTACATTTCAACTTGCAAAAATGGCCCCTTCTCTAACACTCCTTTTGGGAGTAAGGTTTCTCTTTATGACATATGGAAGCCTTAAGAATCATGCCCTAGTCTCCGATATGCTACATTAATGTATTCCAAATCTTTAAGCTAGTGAGTGCATGGCTTACGGCCTCTGTGGGCATCTCCCTGTAGTGCCCGTCTCGGCACTGAAATCTGAGAAGCAGCCAGTATAGTGAAACTGAACATGAGTGCAATTTTAGTAGCTGCACGCACACCCACAAACACGTGTGCACACTTTCAAATTCATTCATATCCCCTGCAGGTGCCTGTTTAGTGGTGTACACCATTGTACACACAGCGAACAAAGgggttatttaaaatatctatagATTTGTCAGTGGATTTGGGTTTTTCTGACCAGTTGGTTAACCCTGCAAGTCATCCTCATGTCTTCATGAGATCTGGTTTGTCCTGGGTTTGATGCAGTGCCGTTTGCAATGTCCTCCTTAGTGTCTAGAACAAGCTTATACGTGAGCTCTACCAGTCCTCAAACTGGGCCTTTCACCTGTGTGGGTGTTATTACCTTTCAATCTCGTTTTTCTGTGGTGGTGAGCTTTGGGCACCATTCAGTGGGTTTTTGGGGGGTATTATGCAGCTAAGTCTTTTTGCATTGGAAGAGGTTTTCTATGTAAATGCATTGCAGTAAGAATACATGAATATTTAATGCATCTACAGTTTGTGTGTTAGTTTTGAAAACTCCCTGTAGAATGAATTTCCCCCTGCATAAGCTTTGGCCTTTTCATTCCCCATAAGTAGGAAATAGTTTTTGTTATATACTATAGCATGCTGAAGTGATGCACAGCTCTAATACTTAAACTGTTTGCTGTGATTCTTTTTTCTGTTGGTTGTAATGTTTTGCATTCCACAAACTGCATTAGTCACTGTCAAGTGCCGGTTTCAAGTTTGGGGGACTTGCCTAGAGATTTACCCTGGTTTTTCAGAACACAATCCTTTGTGGTGACTCATAAGGTAGTCCTAGGGGATGGTGAAACCCCTTATGCGTTGTTAAAATAGTTTGTAATGGTCAGTTTAATTGTCAGGCAGCAGATGGGGATGGGTTGTTTGAGA

Function

symbol description
pcbp2 Enables mRNA 3'-UTR binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be active in cytoplasm and nucleoplasm. Is expressed in intestine; nervous system; otic vesicle; somite; and tail bud. Orthologous to several human genes including PCBP2 (poly(rC) binding protein 2).

NR:

description
PREDICTED: poly(rC)-binding protein 2 isoform X2

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008763 True 3373 mRNA 0.48 11 11021548 11035727

Neighbor

gene id symbol gene type direction distance location
AMCG00008765 NA coding downstream 9977 11004156 ~ 11011571 (-)
AMCG00008756 NA coding downstream 49169 10958584 ~ 10972379 (-)
AMCG00008751 krt8,LOC105023875,LOC107551542,LOC108411779,LOC107681390 coding downstream 249894 10764016 ~ 10771654 (-)
AMCG00008750 e3,LOC108429286,LOC106565226,LOC107705699 coding downstream 296372 10719492 ~ 10725176 (-)
AMCG00008747 NA coding downstream 359357 10655011 ~ 10662191 (-)
AMCG00008761 NA coding upstream 2575 11038302 ~ 11044119 (-)
AMCG00008764 NA coding upstream 9236 11044963 ~ 11051426 (-)
AMCG00008762 NA coding upstream 26560 11062287 ~ 11073591 (-)
AMCG00008767 NA coding upstream 98459 11134186 ~ 11143361 (-)
AMCG00008766 NA coding upstream 115192 11150919 ~ 11171928 (-)
G51261 eif4b non-coding downstream 181876 10839106 ~ 10839672 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding downstream 217839 10801108 ~ 10803709 (-)
G51243 NA non-coding downstream 347693 10668711 ~ 10673855 (-)
G51120 NA non-coding downstream 1090446 9927245 ~ 9931102 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding downstream 1110748 9909611 ~ 9910800 (-)
G51344 NA non-coding upstream 21950 11057677 ~ 11140273 (-)
G51354 LOC100846954 non-coding upstream 127619 11163346 ~ 11164374 (-)
G51403 NA non-coding upstream 190760 11226487 ~ 11258218 (-)
G51574 NA non-coding upstream 967198 12002925 ~ 12010394 (-)
G51588 NA non-coding upstream 1045485 12081212 ~ 12093785 (-)
G51250 NA other downstream 222394 10797632 ~ 10799154 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other downstream 303347 10670949 ~ 10718201 (-)
G51241 NA other downstream 309063 10675756 ~ 10712485 (-)
AMCG00008744 NA other downstream 418175 10560866 ~ 10603373 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other downstream 651232 10338325 ~ 10370316 (-)
AMCG00008777 dctn2,LOC102785932 other upstream 199915 11235642 ~ 11326359 (-)
AMCG00008815 NA other upstream 1565564 12601291 ~ 12605260 (-)
G51797 NA other upstream 1855084 12890811 ~ 12891597 (-)
G51799 NA other upstream 1859608 12895335 ~ 12897134 (-)
G51867 NA other upstream 1965099 13000826 ~ 13001888 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000350_00349222_00357046 PCBP2 coding CI01000350 null 348766 ~ 357046 (-)