AMCG00008747


Basic Information

Item Value
gene id AMCG00008747
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10655011 ~ 10662191 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008747
GGTACAACCAGTTCTTCCACATGACATGCACACCTTCACTGCCATACTCACCTGCCCTGCCCCACTGTACCACTGGATAAAAGCACAGTGAACAGCTGATAGCTTCTTCACAGGGTCAGCCTCGCTATCCTCCTTCACAGCCTGGGTTGCAGCTCCTCTTCTCTCGCTCTCAAGAGTCTCTCCTAGTTGACTTGTTGTCAGTACCAGCAACAAAACCAAGGCCAACATGAGCTTCCAAACTAAGAgagtcagcaccagcagccgGAGCATGAGGAGTTCGTCGGGGATGTCCAGTCAGTCCTACTCGGGCTACGGCCGGGAAGCGGCCATCAGCACCCCCATCACGAGCGTCACGGCCAACAAGAGCCTGCTGACCCCCCTCAACCTGACGATCGACCCCAACATCCAGGTGGTCCGCACCCAGGAGAAGGACCAGATCAAGACTCTCAACAACCGCTTCGCCTCCTTCATCGACAAGGTGCGCTACCTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGAGTCTTTTGGAAGGCCAGAGCATCAGCAAGTCCAACATTGAGCCCATGTTCGACCAGTACCTCTCCAGCCTGCGCCGTCAGCTTGACATCATCACCAATGACAAGAGCAAGCTGAATGGGGAACTGACGAACATGCAGGCAATGGTGGAGGACTTCAAGCACAAGTACGAAGAAGAAATCCACAAGCGCACTGGCCTGGAAAACGACTTCGTTGTCCTGAAGAAGGATGTTGACACAGCCTACATGATGAAAGCTGAGCTGGAGGAAAAAGTGTACTCCCTCACTGATGAGATCAACTTCCTGAGGAGGATCTATGAGGAGATGGACAACTCTCGCAACCTCGACATGGACCAGATTGTGGCTGAAGTCAAGGCTCAGTATGAGGAGATCGCTGCCAAGAGCCGCCAGGAGGCTGAGTCTTGGTACAAGACCAAGtttgaCCAGATGTCTGCCCAGGCCACCCAATACGGAGACGAGCTCCACAACACCAAGTCGGAGATCGCTGACCTGAAACGTTCAATCAGCCGGCTGCAGAACGAGATCGAGAGCGTCAAGAGCCAGCGCAACAGCCTGGAGGTCGAGATCCGAGAAGCCGAGAAGAATGGTGAGAAGGCAGTGAAGGATGCCAGAGCCAAGATCAAGGACCTGGAGGACGCCCTGCAGCAGGCCAAGCAGGCCATGGCGCGCCAGGTCCGAGAGTACCAGGAGCTGATGAACGTCAAACTGGCCCTGGACATTGAGATCGCCACCTACAGGAAGCTCCTGGAAGGGGAGGAGATCAGgcTTACACAGCAATCTGTGATCAATGTCCACACTATGCCTAGCTACAACTCCCAGCGGGTGATGACTGACTACGCCAGTGGTGCCAGCAGCAGCTCTTCATCCAGGGTGCTGATCAAGATGACCGAGGTCCGTGACAACAGCAGACTAAGCTCCCGCTAAGACAAAGCTCAGAGGACCACAAAGCCCAGCGACCATTTCTGCCCCTCTTATCGCTATCACCTCCTTGGCGATTCTCCAGTTCTTAATTCTGCTTCCGTCTCTTCCTTGGAATGAGTTGATTGCCTTTGTCTTGCTTCACTTGCATCCTGCACTGTGTCCATTTTGGAGGAAGAGGTCTTATGCTGTAGTCATGTGCAGATTACTCTTGACTTTCCATTGTgttctttatttgatttgatttttgcaGAATGTTATTGTCAAAGTAAAAAAGagcaatacagaaataaatattgccttcatgtaaaaaacaaacaaaaggaagacTTACAGGGATTGTTTGCCCTGGATATATTTAAAGGGATTGTTTGCCTACATTCTAATTGTACAATGAAGAAATTATACTTAATTTGTTCAAAATTAGACTAcccagttttaaaacaaaactaaagaatggaaatgtacattttctgtcacAGCCTACAAAACATATTCCTCTCAAATGAAGATGCAGATGCAGAccagaataagaaaataatcaaaaactcACAGCCTGCTGAAGGCCAACagcatgtaatttgtttttcaagacTATTGGTAGCATGGGAAAAATACACTAGGTGCAATGGAAATCTTGCTCTCTGACTGGTCTGAGAAGGGTAAGGCAGCAGTGGGGCAATCTcaacagccaaagccacactgacacacaattgttgttttcagtttatgtTGGTACCACCTGCATTATATAGTTGCTAACCCAGCAATTACCAGGCAGTCCCATAGCAGGGCTTGCAAGTGGAGGCCTGAAACAAAAGCAGAGGCATAcattaatgaaagaaaacaaattaaagtcaTGCTATAAGAAAGTGTCCATGTTGCTCTAATAGTGAaatctgtctgtccctctcatACCAACACTGCCTGATAACACCTGGTTCACCCATTTTCAGTCTGGAAAGGAGCAtgtaaatatctttaaatgtgcCAATAAAAAAAGTCCTCTAA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008747 True 2470 mRNA 0.48 9 10655011 10662191

Neighbor

gene id symbol gene type direction distance location
AMCG00008743 LOC103045919,LOC106565233,LOC102299085,LOC100696631,LOC102216220 coding downstream 165245 10472530 ~ 10489766 (-)
AMCG00008739 NA coding downstream 397160 10221420 ~ 10257851 (-)
AMCG00008740 NA coding downstream 461746 10183119 ~ 10193265 (-)
AMCG00008734 NA coding downstream 589677 10059303 ~ 10065334 (-)
AMCG00008731 asic1 coding downstream 620414 10015724 ~ 10034597 (-)
AMCG00008750 e3,LOC108429286,LOC106565226,LOC107705699 coding upstream 57301 10719492 ~ 10725176 (-)
AMCG00008751 krt8,LOC105023875,LOC107551542,LOC108411779,LOC107681390 coding upstream 101825 10764016 ~ 10771654 (-)
AMCG00008756 NA coding upstream 296393 10958584 ~ 10972379 (-)
AMCG00008765 NA coding upstream 341965 11004156 ~ 11011571 (-)
AMCG00008763 pcbp2,LOC100691124,LOC103464415,LOC106956729 coding upstream 359357 11021548 ~ 11035727 (-)
G51120 NA non-coding downstream 723909 9927245 ~ 9931102 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding downstream 744211 9909611 ~ 9910800 (-)
G51081 NA non-coding downstream 915755 9738646 ~ 9739256 (-)
G51057 NA non-coding downstream 1076628 9577268 ~ 9578383 (-)
G51044 NA non-coding downstream 1129324 9521354 ~ 9525687 (-)
G51243 NA non-coding upstream 6520 10668711 ~ 10673855 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding upstream 138917 10801108 ~ 10803709 (-)
G51261 eif4b non-coding upstream 176915 10839106 ~ 10839672 (-)
G51344 NA non-coding upstream 395486 11057677 ~ 11140273 (-)
G51354 LOC100846954 non-coding upstream 501155 11163346 ~ 11164374 (-)
AMCG00008744 NA other downstream 51638 10560866 ~ 10603373 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other downstream 284695 10338325 ~ 10370316 (-)
G51008 NA other downstream 1261784 9390843 ~ 9393227 (-)
G50788 NA other downstream 1994994 8656728 ~ 8660017 (-)
G50739 NA other downstream 2283681 8367916 ~ 8371330 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 8758 10670949 ~ 10718201 (-)
G51241 NA other upstream 13565 10675756 ~ 10712485 (-)
G51250 NA other upstream 135441 10797632 ~ 10799154 (-)
AMCG00008777 dctn2,LOC102785932 other upstream 573451 11235642 ~ 11326359 (-)
AMCG00008815 NA other upstream 1939100 12601291 ~ 12605260 (-)

Expression


Co-expression Network