XLOC_033920 (gpatch1)


Basic Information

Item Value
gene id XLOC_033920
gene name gpatch1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38265363 ~ 38277255 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066351
ACTTATTGTAAACATGGCGTCCGACGAAGACAGCGATGAAGATTTTGTGACTTACGGGACTCCCTTAGAACCTCTGGAAGAAGATGAACCCAGCAGAAAGCCAATACCTGTGCACGAGCAGACTGTTAAAGATGAGAAGGGTCGATACAAAAGGTTTCACGGGGCTTTTACTGGTGGTTTCTCCGCTGGTTACTTCAACACAGTGGGCTCTAAAGAAGGCTGGACGCCGTCAACATTTGTATCATCTCGACAACAAAAGTCCGAGAAACACAATGCCAGACCAGAGGACTTTATGGATGAGGAGGACTTTGGTGAGCATGGTATTGCACCGCGAGAGATCACCACAACAGACGAGTTTGCCTCTGAGAGGAAAGATCAGATAAAGGACAAAGCGCGAGCTGTCAGCTCTCTCGCTGCTCTGATTCCTGGTGACCCTGGACTGCTGGAGGAGTTCATTGCCCCTGCACGGTCATCCATTGGTGTGGAGCTGCTGAGAAAAATGGGCTGGAAAGATGGCCAGGGAGTCGGTCCAAGATTGAAAAGAAAGCCACGCAAGCAAAACACTGGCAGAGTTTATGGCTGTTCTTTGCCTCGCAATGGATCAGAAGAGTCTGAGgagGACGATGATGAATTTGCTCCAGAGAATGTGACCTTTGCCCCTAAAGATGTGGTCCCGGTGGACTTTACCCCTAAAGTGGACTCTCATGGTCTGGGTTACCGAGGGTTGAACCCTTTACAGGCCCTGGGTGGTGGATCAGGATCAGGACATATAAACCTTTTCACGCTTCAGTCTGACAGAACAACCAACCTATTTGGAGACAGAGCATCTGGACAGGAGCGCAGGGGTGGGATTGCAGGACAGGCATTTGGAGTTGGTGCAATGGAAGAGGAAGATGGCGATATTTATCATAAAGACTCCATGTCAAACTATGACAATGTGCTGGGAGGAGAAGAGCCAGGAGATGGACTGTACGGATGGACTGCTCCCCAACAGTACACTAAAAAGAAAAATGcTTTAAAAAGAGTTATGGCCTATTCTGGCAGGATTCTGGATGGCTTTGCATTGGCCTCAGAAGTCACAGAGATTAAAACGGTCTATCCTCCCCCTGATTTGCCTCGTGATTTTCGACCTGTACATTACTTCCGTCCTGTGATTGATCCATCCACCGTCAGCCCCATCGTTGCTCAGGCACTACAGCTCTCGCGTGGACAGCTTTCACAGGATGCATCACAGCAGGGCCGCCACAAGTTAGACTCCACTCAGAGACGTGACATGCTGGGAGAATCCGCTTTACAGGGCCCCAGTTCTGTGTTTGAGCTGCTGGAAAGTAAAGATAGAGAGCGGCTGACTGAGATCCGCAAAGCAGCAGAGAGCCAGAAACCGTCGGAGAGTAACCTTTCGTCGGCTGTAGATCGAGCCGTTGTGGTGGCTTCAGCTAAAGCAAAAGCTGCCGCTCTGCAAGCCCTCTCCAGCCGTTTCCAGTCAAGCTCCACACAGCCTCAGCCTCCCTCTGAAACCCAGATGGCCTTGAATGCTTGGTCTGGACCCACTGCTGATGCTAGCAAAACCTTCAAACCATTCTCAAAGAATCCTCAGAAACAGGCCCGCTATGATCTGTACATTAGCAAACTTAAGCAGGGTGATAAAGATGCTGTTGAGTTGAGTCTGGACTCCTCTATGACAGAGTGGGaaagaggaagagaaagagaagaaTTTGTGCGTGCTGCTTTACTCTACAAGCCCAGCAGCTCATCTCTCTCTTCACGCTTCACACATGGAAAACATGAGGAGGACACTGACACTGTGGATGTTGCACAAGAGCAAGAGAATGATGTGGATGACAAACAGGCTGCTGTGAAGATGAAGATGTTTGGGAAGCTTACCAGAGACACGTTTGAATGGCATCCTGATAAACTGTTGTGTAAAAGGTTCAATATTCCCGATCCTTATCCAGGGTCCAGTATGGTGGGAATGCCTAAAGTAAAGAGAGATAAGTACTCTGTCTTTAACTTCCTAACCATACCGGATGGCAGCCAGGTCAACCCAAGTGATCCCAAACCTTCCAGCTCAACCATTCCTCGAGTGACCGCAGAAGCCTCCAGTAAGAAATCTAGGTGGGACGTACCAGTGCAGGCATCTGAACCTAAAGATGCAGTCAGTGCCTTTCTTAGTGAAACTCGCAGTGAAGTTTCAGCGACCCAGCAAACAGAGGCTGAGGTCAAGACCCAGACAGACGCTCTACCTGCTTCTGCCACTTCAGAGGTAAAAGTGGCCCAATCTGTTGAGAAGCAATCTGATCAAAagaatgaagaggaggaggaggaggaggaagaagaggtgAGGCCTTCAATGGATCTCTTTAAAGCCATCTTTGCCAGCTCATCTGATGAGAAAAGCTCCTCTTCATCTGAAGATGAGGCTGAAGAGGAGGAAGAGTTGGCCCCTCCAACATCTGAAGCAGCCCAGAGCACTACTACATCTGGGACCGTGATTCCACCCATCCCGGCTCAGTTCACTCCTGCTCCTGACATCAACAAAGCAATGGATTTGAAGCATCTCACAGTCCAGAGTGTGCCATCTGCTGAAACTACAGCCCAAAGTACCCAATCCTCCTTAAATGCTCCAGCTAAATCACAAGGCCTGGACGAAGAGGAGTTTGGCCCCAGACTGCCACCTCCTGGGTTTGTGCCATCTACACACTCACCGCAAATGAAGAAACAGAAGAAGAAAGATAAAGAGAAGCACAAAGGCAAAAAACACAAGAAAGAGAAAAAGAAGAAAAAGAGCAAGAAGCATAAGCATAAAGGGAAGCAGAAGAAGAGGCATGAGGAGTCTGACAGCAGCTCAGACGACACCGACTCCAACAGTGAAGATGTAGATAGAGATGTGCCCACCAGTGAACTGCTCCAGAGGTTAAAAAATCTCAAGAACAAGAGGTAGAACATGTATGAAGAACTGCCTGTCCTTTGTGAGGATTCTGTTTTAGAGAAATGTCAAGaagctactgtgtgtgtgtgagagagactgtGTGCGGgtacaaatgtgtttgtgtgcCCACATGTTTGGTGCATTTATTTACATAAGTGTACCTGATTTCAAAATATGTTATGATTACAGAAatttgtcataaataaataataaaattgaaaaaaaaaatgta
>TCONS_00066352
GCAGAGTTTATGGCTGTTCTTTGCCTCGCAATGGATCAGAAGAGTCTGAGGACGATGATGAATTTGCTCCAGAGAATGTGACCTTTGCCCCTAAAGATGTGGTCCCGGTGGACTTTACCCCTAAAGTGGACTCTCATGGTCTGGGTTACCGAGGGTTGAACCCTTTACAGGCCCTGGGTGGTGGATCAGGATCAGGACATATAAACCTTTTCACGCTTCAGTCTGACAGAACAACCAACCTATTTGGAGACAGAGCATCTGGACAGGAGCGCAGGGGTGGGATTGCAGGACAG
>TCONS_00066353
CACAAACTGTTTTTGTATACTATATTGTATTAAAGTAAGTGCTTTCAGAAGCACCAGATTATTTATACGGATGTACCATGAAAATCTATATTGTTATGCATAATTATCTGCATCATTTTTCTTTGCTTTAGATTTGAAGCATCTCACAGTCCAGAGTGTGCCATCTGCTGAAACTACAGCCCAAAGTACCCAATCCTCCTTAAATGCTCCAGCTAAATCACAAGGCCTGGACGAAGAGGAGTTTGGCCCCAGACTGCCACCTCCTGGGTTTGTGCCATCTACACACTCACCGCAAATGAAGAAACAGAAGAAGAAAGATAAAGAGAAGCACAAAGGCAAAAAACACAAGAAAGAGAAAAAGAAGAAAAAGAGCAAGAAGCATAAGCATAAAGGGAAGCAGAAGAAGAGGCATGAGGAGTCTGACAGCAGCTCAGACGACACCGACTCCAACAGTGAAGATGTAGATAGAGATGTGCCCACCAGTGAACTGCTCCAGAGGTTAAAAAATCTCAAGAACAAGAGGTAGAACATGTATGAAGAACTGCCTGTCCTTTGTGAGGATTCTGTTTTAGAGAAATGTCAAGaagctactgtgtgtgtgtgagagagactgtGTGCGGgtacaaatgtgtttgtgtgcCCACATGTTTGGTGCATTTATTTACATAAGTGTACCTGATTTCAAAATATGTTATGATTACAGAAatttgtcataaataaataataaaattgaaaaaaaaaa

Function

symbol description
gpatch1 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human GPATCH1 (G-patch domain containing 1).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040914-65 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human GPATCH1 (G-patch domain containing 1).

Ensembl:

ensembl_id ENSDARG00000033418

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066351 False 3161 mRNA 0.48 19 38265363 38277255
TCONS_00066352 False 293 mRNA 0.51 2 38267136 38267612
TCONS_00066353 True 742 lncRNA 0.39 4 38275337 38277251

Neighbor

gene id symbol gene type direction distance location
XLOC_033919 cnep1r1 coding upstream 983 38258749 ~ 38264380 (+)
XLOC_033918 si:dkey-78a14.4 coding upstream 7515 38249858 ~ 38257848 (+)
XLOC_033917 BX323797.2 coding upstream 17616 38245927 ~ 38247747 (+)
XLOC_033916 BX323797.1 coding upstream 29123 38229070 ~ 38236240 (+)
XLOC_033915 BX323797.4 coding upstream 61970 38202538 ~ 38203393 (+)
XLOC_033921 lrp3 coding downstream 1605 38278860 ~ 38310177 (+)
XLOC_033922 NA coding downstream 38400 38315655 ~ 38346479 (+)
XLOC_033923 rhpn2 coding downstream 72410 38349665 ~ 38393421 (+)
XLOC_033924 cep89 coding downstream 117942 38395197 ~ 38500305 (+)
XLOC_033925 slc7a9 coding downstream 229751 38507006 ~ 38527833 (+)
XLOC_033914 BX323797.3 non-coding upstream 70661 38193343 ~ 38194702 (+)
XLOC_033913 NA non-coding upstream 97149 38151036 ~ 38168214 (+)
XLOC_033929 BX957297.3 non-coding downstream 371881 38649136 ~ 38649529 (+)
XLOC_033931 BX957297.4 non-coding downstream 401163 38678418 ~ 38678532 (+)
XLOC_033951 BX908792.2 non-coding downstream 1435960 39713215 ~ 39713774 (+)
XLOC_033960 dre-mir-153a non-coding downstream 2208255 40485510 ~ 40485590 (+)

Expression


Co-expression Network