XLOC_033951 (BX908792.2)


Basic Information

Item Value
gene id XLOC_033951
gene name BX908792.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 39713215 ~ 39713774 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066462
AAACAAAATACTTTGTGCATCAGGACAGTTCACTATGACTTCCCAACAAGGTTTTTTAGTATTATCCTGTTGATATCAGAGCTATCTCGCTGAATCTGCAGCTATGCGTCATTATCgtgcttgtgtttttctttttctttttgttcaacTACAGGAAACCatTCCACTGGAACTGATTGCTGTTataattttttcaaaagaaaaatcccCCTGAGTAAAATTAATTCCTACAGTCTGACAAGAGTGGACTGCACTATGCCTGGAGTAATGAAGGAAAGATGCAAATGATTGCAATAAACTTTAGTTGT
>TCONS_00066463
TGATTGCTGTTataattttttcaaaagaaaaatcccCCTGAGTAAAATTAATTCCTACAGTCTGACAAGAGTGGACTGCACTATGCCTGGAGTATTTGTCACACAGAAGGGTTTGCGGCTCTGTGTGGAACCTAAGCTGAACTGGGTCAAGAAAACCATCCAAATCATTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105550

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066462 False 308 processed_transcript 0.36 2 39713215 39713623
TCONS_00066463 True 170 transcribed_unprocessed_pseudogene 0.41 2 39713489 39713774

Neighbor

gene id symbol gene type direction distance location
XLOC_033950 ccl36.1 coding upstream 6054 39706004 ~ 39707161 (+)
XLOC_033949 tbc1d14 coding upstream 7452 39679944 ~ 39705763 (+)
XLOC_033948 zgc:158564 coding upstream 34685 39664055 ~ 39678530 (+)
XLOC_033947 ptpn5 coding upstream 52053 39624728 ~ 39661162 (+)
XLOC_033946 tnnt3b coding upstream 252852 39444843 ~ 39460363 (+)
XLOC_033952 si:dkey-58i8.5 coding downstream 6543 39720317 ~ 39722716 (+)
XLOC_033953 tada2b coding downstream 24731 39738505 ~ 39743452 (+)
XLOC_033954 sorcs2 coding downstream 43834 39757608 ~ 40057772 (+)
XLOC_033955 MAF1 coding downstream 367856 40081630 ~ 40092016 (+)
XLOC_033956 si:ch73-174h16.4 coding downstream 379888 40093662 ~ 40102043 (+)
XLOC_033931 BX957297.4 non-coding upstream 1034683 38678418 ~ 38678532 (+)
XLOC_033929 BX957297.3 non-coding upstream 1063686 38649136 ~ 38649529 (+)
XLOC_033922 NA non-coding upstream 1366736 38315655 ~ 38346479 (+)
XLOC_033917 BX323797.2 non-coding upstream 1465468 38245927 ~ 38247747 (+)
XLOC_033916 BX323797.1 non-coding upstream 1476975 38229070 ~ 38236240 (+)
XLOC_033960 dre-mir-153a non-coding downstream 771736 40485510 ~ 40485590 (+)
XLOC_033963 CU041319.1 non-coding downstream 1156857 40870631 ~ 40870748 (+)
XLOC_033965 NA non-coding downstream 1248954 40962728 ~ 41104337 (+)
XLOC_033966 AL772146.1 non-coding downstream 1399127 41112901 ~ 41113295 (+)
XLOC_033975 BX005319.1 non-coding downstream 1745879 41459653 ~ 41460435 (+)

Expression


Co-expression Network