XLOC_033965


Basic Information

Item Value
gene id XLOC_033965
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 40962728 ~ 41104337 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068917
GCTGAAATTCGGGACGCCATTGGTCTGGCGCTTGTCAGTCTGTGGCGCGCCGACACTCGTGAACGCGCTGCGCAGACAGTGCACGACACGTAAGTGGCCAGAGTGTCTGGAGTCTGTCTGAAACTGATAAAAATGGTGATGGAGTTTATCCAGAGTCTCGCTCATAGTCAGTAGCAAAACAAAGGGAGACAGAGCGGAATTTTGCAGGCGTCCAACACTGTAGCCATTTTCGTAGCGTGAAAATGAGATTCTATTGTAGCGCATCTCAAAGTTTCAGTCCATGTTTTtcaccagacagacagacagttcatTAATTCACAGGCAGGATTATCATTCTGGTACCTGCCGATGACCTTTCGGAGTTGTCACCAAATCATCTACCCTTAAAAGTGATGCGAGTGTTGTGCTGCCGTGCTGATGGATAGTGAAGAAGAAGAACTGTGATGGTGCTTCTGCAGAGGTGTGATACAgCGTGTACTCCAGGTGGCGTGTGATGGACCAATAGCGATCAAG
>TCONS_00068918
CGCAGACAGTGCACGACACGTAAGTGGCCAGAGTGTCTGGAGTCTGTCTGAAACTGATAAAAATGGTGATGGAGTTTATCCAGAGTCTCGCTCATAGTCAGTAGCAAAACAAAGGGAGACAGAGCGGAATTTTGCAGGCGTCCAACACTGTAGCCATTTTCGTAGCGTGAAAATGAGATTCTATTGTAGCGCATCTCAAAGTTTCAGTCCATGTTTTtcaccagacagacagacagttcatTAATTCACAGGCAGGATTATCATTCTGGTACCTGCCGATGACCTTTCGGAGTTGTCACCAAATCATCTACCCTTAAAAGTGATGCGAGTGTTGTGCTGCCGTGCTGATGGATAGTGAAGAAGAAGAACTGTGATGGTGCTTCTGCAGAGGTGTGATACAgAGAAATAACAGCAATCTTCCAGAAGCCATAAACCACCTGCTGAATGCCCATCCTGCAGTTCTCACTCAGGAGGCTTCAGCTGATAGTCATCTTGTCCTTGAGGAAGCACAGCACCCAGTAAATATGGACCA
>TCONS_00068919
CGCAGACAGTGCACGACACGTAAGTGGCCAGAGTGTCTGGAGTCTGTCTGAAACTGATAAAAATGGTGATGGAGTTTATCCAGAGTCTCGCTCATAGTCAGTAGCAAAACAAAGGGAGACAGAGCGGAATTTTGCAGGCGTCCAACACTGTAGCCATTTTCGTAGCGTGAAAATGAGATTCTATTGTAGCGCATCTCAAAGTTTCAGTCCATGTTTTtcaccagacagacagacagttcatTAATTCACAGGCAGGATTATCATTCTGGTACCTGCCGATGACCTTTCGGAGTTGTCACCAAATCATCTACCCTTAAAAGTGATGCGAGTGTTGTGCTGCCGTGCTGATGGATAGTGAAGAAGAAGAACTGTGATGGTGCTTCTGCAGAGGCTTCAGCTGATAGTCATCTTGTCCTTGAGGAAGCACAGCACCCAGTAAATATGGACCATATAGAGATCAATACTGAGGCTTGTTCAATAGCTGTGGTGATATTGAAGCCAGAGGAATAAATGAGTCTTCTCTTCAACAAG
>TCONS_00066486
ATTAACCCCATGAACTCGTGATGCCAAAACACTGCTGCTGCCGCTGCAGTGTGAATTTCAGCCTGCCTGGACTGTTTTCAACACGGCAGGATTATCATTCTGGTACCTGCCGATGACCTTTCGGAGTTGTCACCAAATCATCTACCCTTAAAAGTGATGCGAGTGTTGTGCTGCCGTGCTGATGGATAGTGAAGAAGAAGAACTGTGATGGTGCTTCTGCAGAGGTGTGATACAgTCACTCCGCCAGAGAAGAATATACAAGGCAGCCATGAACGGACATACAAGAAGTCTGGAGAAGTATACCTGGTAACAAATGAAGAAAAGGACTGAAATGACGAGCTgcttaaaggaaaaacaaaactgagTGTTTGCACTTGATATAATATTTGCTAATGTTTCttacaaaaaaaacatgttctaCGACTAAAATTATGAATATGTGAGAGTGTTAGTTACTTGCTAGTTGATATGAAAACAGTTTTCTGTTGCTGTTTGTCAACATGTTTGAGTCATAACTTACTGGTAGATGCCGTTGTAGACCAGCAGCTGAGCAATGAGAGTGGCCAGCAGGGCAGTGGTCAGCCCTAAACCAAAGCCACTCCTGGAGCGGTCAAATGTCCACCACAGACCCAGAGACAGGGCAGCCAGAGTTAGCGATAGCTGCACATTGTTAGCAAAGTCCAGTTTCTGTAAGGTACTTTGAGTTAAGCAAAATATTCTTATGTtaacatacattttgaaaacattgtgATGTTAACTCAAGAATTGAGTTTGTGCAGGTTCCCAAGTTTTTGCTGGTCCACACATTTGGAGAGCAGTAAACAGGTTCCACAAAAACTTTGTagtcaaatttattaaaaactttttttt
>TCONS_00066487
GATGCCAAAACACTGCTGCTGCCGCTGCAGTGTGAATTTCAGCCTGCCTGGACTGTTTTCAACACGGTAAAGAAACGGCTTGTAGCCATGCGCCAAGTCGCCTGTTGTTTATCCGCAATTTAAGGCCATTTTTTTCTTAGCGTGAGACTTCCTTATGCGGTGAATGTCCGCGTTGTAATTCTTCATGGTTTGGAGTTTAGTCTGTGTTAGAGAGCAAAATAGGCTGTGGTTTGAGGTAAGGAGCTGGTTGGTCTAAAGGCAGAAAACTTCAAAGATCGTAACTGGTGTCATTTCTGTATCGCGCACGGATGGTATGGTCCAAAGCAGGATTATCATTCTGGTACCTGCCGATGACCTTTCGGAGTTGTCACCAAATCATCTACCCTTAAAAGTGATGCGAGTGTTGTGCTGCCGTGCTGATGGATAGTGAAGAAGAAGAACTGTGATGGTGCTTCTGCAGAGGTGTGATACAgTCACTCCGCCAGAGAAGAATATACAAGGCAGCCATGAACGGACATACAAGAAGTCTGGAGAAGTATACCTGGTAACAAATGAAGAAAAGGACTGAAATGACGAGCTgcttaaaggaaaaacaaaactgagTGTTTGCACTTGATATAATATTTGCTAATGTTTCttacaaaaaaaacatgttctaCGACTAAAATTATGAATATG
>TCONS_00068587
CAGCCTGCCTGGACTGTTTTCAACACGGCAGGATTATCATTCTGGTACCTGCCGATGACCTTTCGGAGTTGTCACCAAATCATCTACCCTTAAAAGTGATGCGAGTGTTGTGCTGCCGTGCTGATGGATAGTGAAGAAGAAGAACTGTGATGGTGCTTCTGCAGAGGTGTGATACAgGCTTCAGCTGATAGTCATCTTGTCCTTGAGGAAGCACAGCACCCAGTAAATATGGACCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-141222-56 No description available

Ensembl:

ensembl_id ENSDARG00000102807

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068917 False 513 lncRNA 0.49 4 40962728 41094165
TCONS_00068918 False 532 lncRNA 0.46 5 40962798 41060632
TCONS_00068919 False 531 lncRNA 0.45 5 40962798 41104337
TCONS_00066486 False 870 lncRNA 0.41 4 40963328 41012720
TCONS_00066487 False 678 lncRNA 0.43 5 40963347 41012290
TCONS_00068587 True 236 lncRNA 0.48 4 40963386 41060632

Neighbor

gene id symbol gene type direction distance location
XLOC_033964 shha coding upstream 69433 40884012 ~ 40893295 (+)
XLOC_033963 CU041319.1 coding upstream 91980 40870631 ~ 40870748 (+)
XLOC_033962 lmbr1 coding upstream 254588 40658003 ~ 40708140 (+)
XLOC_033961 mnx1 coding upstream 321722 40638210 ~ 40641006 (+)
XLOC_033959 ptprn2 coding upstream 463342 40228422 ~ 40499386 (+)
XLOC_033966 AL772146.1 coding downstream 8564 41112901 ~ 41113295 (+)
XLOC_033967 puf60b coding downstream 42223 41146560 ~ 41158143 (+)
XLOC_033968 scrib coding downstream 55888 41160225 ~ 41275897 (+)
XLOC_033969 si:dkey-86l18.10 coding downstream 191637 41295974 ~ 41302860 (+)
XLOC_033970 rgs9bp coding downstream 199235 41303572 ~ 41312197 (+)
XLOC_033960 dre-mir-153a non-coding upstream 477138 40485510 ~ 40485590 (+)
XLOC_033951 BX908792.2 non-coding upstream 1248954 39713215 ~ 39713774 (+)
XLOC_033931 BX957297.4 non-coding upstream 2284196 38678418 ~ 38678532 (+)
XLOC_033929 BX957297.3 non-coding upstream 2313199 38649136 ~ 38649529 (+)
XLOC_033975 BX005319.1 non-coding downstream 355316 41459653 ~ 41460435 (+)
XLOC_033976 BX005319.2 non-coding downstream 478207 41582544 ~ 41582659 (+)
XLOC_033978 AL928906.1 non-coding downstream 656924 41761261 ~ 41761379 (+)
XLOC_033982 CU570782.3 non-coding downstream 1209437 42313774 ~ 42313888 (+)

Expression


Co-expression Network