XLOC_033959 (ptprn2)


Basic Information

Item Value
gene id XLOC_033959
gene name ptprn2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 40228422 ~ 40499386 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066477
GGGGTACCGGAGCATCAGTCATCTCACTGCCTCTGACCCACTTCTGCTCTAATCACAGCACCCCCGAAACCCGAGAGAGCCGCTATGCTGAATTAACGGGAGCTGAGCTGAGCTGGGCTCGATGAGCAGGATGGCTCGTGTGCGCGCGCTGCTCCTCGCCTCTCTGTCCGTCCACGCGCTCGCCGTTTCCATCGCCGACCGGAGATTCGGTTGTCTGTTTGAAGATGTGTGTAAACTGAATGAAGTCTGCATCAATGATGCGGTGTTTGGTCAGTGTCTGAGGTATCCAGGGTCAGATGTGAGCTCTTTCGATGTGTCTCCAGCAGCGGTGCAGCGTTTGCGAAGTGTTCTTCAGAAACTGGCCCACAGAGGATATACTTGGCAGGATGACATAACTCAGCAGGTAATCTCAAAAGAGCTCTCACAACTTCCCAGGGTTTCTCTTGGAGGATTTGCAAACACCTTTCCTCATTTCAATGACAATTCCCGGAAGCTGAAGGCTCAGAAAGAAGCAGCGAGCAGGACATTGCAAAGGTTCCTTCAAGGTTTCCTGCCTTCTGATGTTTCCTCCTTCAAACAGAGTCCTCAAGGGCGAAGAGAGTTTTGGAAGGAAAATGGACTGCGCAATCATAAGGTTTTTATTCAGCCTCCTTCAGCACAGATCCCCTTCCTACAAGGCCGCCCTGATCTCCAGACAACTGTGGCGCAGCTTCCCTCAGGTCGATCATCCTTCAGTGGGTTTGAACAGGATCGTAGCGGAGTCCCTCTTGCTGAGCTTCAGCAGTATCAAGCTGGGCCCATGAGAGCACAAGATCCTGGTAAAGGTCAAACACAGGGAAAGCTGCATTACTTCAGCCTCCAGCGCACTCCTGCTACCAAAATAGAAAAACTGCCTGGAGCTTCCAGACAACCTCCAAAGCCCCAAATCGAAAAATTGTTGCTCAAATCTTCAGCAAGCAGTCCAGCTCGTAAGGAGGCCCTCAGTACAGTAGATGAGAAGTTCATTGATGGAGTGGTTAACCAGCTAGGACGTCAGAGCGTCAACGTGGACACTTTGACCCCAAAGGACCTGGACAAACTCTCCAAAGTAATCACACAGGCCCTGCGGGTGGTAGATGGAGAAGAAAAGGTCAAAGGCAGAGACGCCACACAGGGTGAAATAGAGGTAAAGAGGGAACCCAGTCAGGAATTACATCAGATGGAGAAAGCAGAAGATGGCCCAACTCATAAAGTAACTCAAACAGAAGAAACTGCCCATAAATCTGAAGACAAGGACAAAGGTTTTATCAGCCAGCTGCTGGAGTTCCTGGATCGTAACTCTGGCACTGAATCTGCTCATCCTCCCCAAGAGTCTTTTCTGGGGTACATCAACCAGCCAAATGCTGGAAGTCCACTGAGAGCCAGTTTGGAGAATGTCCAAAGCCGGACAACGCAAAGAGAAGTAGACCTGATGAAGAAGAAAATGGAACCTGACACTTTGGATGTTGAGCCAGTAGATGCTGAGGTTGAACAGTGGATGCACAGCTCTGAAGGCTCTCCACAAGTCAAAGCAGAGGCTCAAACAGATAAAGAGCCTCAAAAACAATCCATGGACAAAGAAGAGGTGGAGAAGAAGGGTGTTCGTGTGGAAGTGAACATTGCAACGTATTCAAGTCCACACGACGGAGACTTTGGCTATATTATTACTGAAGAttcgCTGTCCACTGATCAGGGGCTGAACCTCATGGAGATCTTAGCTGAGCGAGTCAGGCTTCATGTAACAGATTTCCTACAGCTCTcGGTTCTAGGGCCAGCAGTAACCTTTCGACTACGACCCAATGCTCGAAACATCAGCACGGCCCAGCTAGCCAGAGTGGCAGTTGAGCAAAAAGGACAGCTGGAGAAGGAGAGTGGTCTGCGGATTCTTGAGGCTGGACTGAGTGATAGGGGCAAACTAAACCACATTCCCCTGGTCAAACAGAGTCAAGTGGAGCCAGGCAACTTTTTGATTCTGGTGGTGGTGTCCATGGTTTTCATTGTACTGGTGTTGGGGATGTCGGGGGCTCTGTACTGCCTGCGCCATCGCTCCCACCATAAGCTGAAGGAGAAGCTCGCCGGTTTAGGAAACGACACAGGCCACGATGCCACAGCAGCCTATCAGGATCTCTGTCGCCAGCGTATGGCGGTGCagacatcagagcgaggcgagCGATCGGAGGTGTTTCACCCATCGCACACGTCACGCATTAACAGCGTGTCCTCACAGTTCAGTGATGGACCAATGCAGAGTCCCTCGGCCCGCAGCAGCACATCATCCTGGAGCGAAGAGCCTTCCCAAACCAACATGGACATCTCCACTGGACACATGATACTGTCGTATATGGAGGATCACCTGCAAAATAAGGATCGTTTGGATAAGGAGTGGGAGGCTCTGTGCAGTTACCAGGCTGAGCCAGCAGTGTGTGCGGTGGGTCAGGAGGAACAGAATGTCCAGCGCAATCGCCCACACGGCGTccttgtgtATGATCACTCTAGATTCATCCTGAAGCTGGAGAATAACCAATCCAGATCTGATTACATCAACGCAAGTCCTATAATGGACCATGACCCCCGAAATCCAGCCTATATTAGTGCTCAAGGTCCTCTTCCCTCCACAGTGGCAGACTTCTGGCAGATGGTCTGGGAGAGTGGCTGTGTGGTGATTGTCATGCTGACACCTCTCGCTGAAAACGGCCTCAAACAATGTCATCAATATTGGCCTGATGAAGGCTCAGACCTCTACCACATATATGAGGTTAATCTGGTATCCGAGCATATCTGGTGTGATGATTTCCTGGTGCGCAGTTTCTACTTGAAGAATGTCCAGACTAATGAGACCCGCACAGTCACCCAGTTCCACTTCTTGTCCTGGATGGACCAGAATGTTCCAGAGTCTGCTAGAACCTTGCTGGACTTCCGCAGAAAGGTTAACAAGTGCTACCGGGGCAGATCTTGTCCAATAATTGTTCATTGCAGCGATGGTGCCGGAAGGAGTGGAACCTACATCCTGATTGACATGGTTCTGAATAAAATGGCTAAAGGTGCTAAAGAGATTGATATTGCTGCTACGCTGGAGCACCTGAGAGATCAGAGATCAGGCATGGTGCAGACCAAGGATCAATTTGAGTTCGCACTGACGGCTGTAGCAGAAGAGGTGAACGCCATCCTGAAAGCTCTGCCTCAGTGAAGGGAACTTTCACAAACACTTCCAACCAGTCTTCTTCCTATCTTTTCTGTGTAACTTTGGATAAATATGAAAATTGACACTATTTCAGGCTCTTTCCAGACTGTATTGCATAAGACGTTTCTTTGTACTTTGTGTAAAGTTCTATAGCATTGAAATAAATGTTAGAACGATATTCAACTACTGTATAGCCAACTAGGCATGCAATCATATTTGCAGATTAAATTGGTGTTTACATAGTTGTGCATCTGAAATATCTGAAACGTGTTTGTGTGAAGCAGATGTGATTTTAGCGGTGTTGTATTACACTGTATTAGTCCACTGCAGTTATATTATTATACACTGAGATCATGTGACTGACCTTTACAGTTATGGATGAGCAATATTAATGCAACTATGAGaaactttattttacagtctCTTTGTTATGTGAATTTAACTAACCCTAAACCCTGCTCCTATAACACTAACCCTTTTGTAAGTGCTTAATGAATGACTCAGAACCTAAATGTATAATTAAACTGTAACAAGGAGACCTTAAGATAAAGTTTACCCCAGCATATTACGGTTTTCCAGTTGTGCTTTACTTGAACTCAACCTTTGTTGTTGTGATATATCGTTTCTGTCAACTAACAAACAGATTGtattagatataaatatattatattataattgatTATACGTACAGAATGAACCATGTGATTTAAAATGGTCTGCCAAAATgtaattgtatatattatttttgtgtgtgcagtaTAAAAGTAACATAATAAATATCATAATGCTGTAACACAA
>TCONS_00066478
ATTCAAAGGACAAGACAACCCGCTGCAGCTTCTTATAAGTCTTTGGGAAATGTGGCGGACTATTTAGCTCGCCCTTTTTTCTCCCTCGCTGCCTCTTCTctttcaaactgtttttttttaatccgcATCTGTTAACAAAAACACTGCGACGGTCTTTTGTTGAGGTGGACGTGAAAGAGGAGGTTAAAAACTTTTCTTAGCTTGCGGGATTGCAAAAGGAGGCTGCAGTCGCCCATCGGACATCAGGCGGAATAGGAGCATCTCTCGCGCTGTCCGAAAATGGAACTAGAGGGGCAAACTAAACCACATTCCCCTGGTCAAACAGAGTCAAGTGGAGCCAGGCAACTTTTTGATTCTGGTGGTGGTGTCCATGGTTTTCATTGTAC
>TCONS_00066479
AAGGAGTGATTGAAGCAGGCTGAAGAGGCACTGGCGTGCCCAGGCCTTTCAGGAGTCTTAATTGCATGTGTCAGGACAAGCCCCCTCCCTGCAACcccccctttctctctctctctctctctaccccCCCTCTCTCTTCTCCTTTGTGGTGCATGTTTAGGATTACTGTCTACGATTCCCGtgccgagcaggtttgagctcTTGTCTGTCTGAAGGTGGATAGTCGTATATGGAGGATCACCTGCAAAATAAGGATCGTTTGGATAAGGAGTGGGAGGCTCTGTGCAGTTACCAGGCTGAGCCAGCAGTGTGTGCGGTGGGTCAGGAGGAACAGAATGTCCAGCGCAATCGCCCACACGGCGTccttgtgtATGATCACTCTAGATTCATCCTGAAGCTGGAGAATAACCAATCCAGATCTGATTACATCAACGCAAGTCCTATAATGGACCATGACCCCCGAAATCCAGCCTATATTAGTGCTCAAGGTCCTCTTCCCTCCACAGTGGCAGACTTCTGGCAGATGGTCTGGGAGAGTGGCTGTGTGGTGATTGTCATGCTGACACCTCTCGCTGAAAACGGCCTCAAACAATGTCATCAATATTGGCCTGATGAAGGCTCAGACCTCTACCACATATATGAGGTTAATCTGGTATCCGAGCATATCTGGTGTGATGATTTCCTGGTGCGCAGTTTCTACTTGAAGAATGTCCAGACTAATGAGACCCGCACAGTCACCCAGTTCCACTTCTTGTCCTGGATGGACCAGAATGT
>TCONS_00066480
GTATGAGGTTGTTTACTTCAGTTAAATGATGATTTTGTGTATTACAGAAGAACAATTTAGTTAACGATTGAATTTTAGAGCATTAATCTTTGAGTTCCTTCAGTTGAATTTGTTTTAAGGCAATTCGTTTCTACGGATGTAATTGAGAGTGTTGGGAAGGTTTTACTTGCAGATGCTCTAATAGTTACATCTGTCTGTCTCTGAATGTTATAGATGATCACTCTAGATTCATCCTGAAGCTGGAGAATAACCAATCCAGATCTGATTACATCAACGCAAGTCCTATAATGGACCA

Function

symbol description
ptprn2 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in secretory granule; synapse; and transport vesicle membrane. Predicted to be integral component of membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in prediabetes syndrome and type 1 diabetes mellitus. Orthologous to human PTPRN2 (protein tyrosine phosphatase receptor type N2).

GO:

id name namespace
GO:0035773 insulin secretion involved in cellular response to glucose stimulus biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0030141 secretory granule cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3758 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in secretory granule; synapse; and transport vesicle membrane. Predicted to be integral component of membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in prediabetes syndrome and type 1 diabetes mellitus. Orthologous to human PTPRN2 (protein tyrosine phosphatase receptor type N2).

Ensembl:

ensembl_id ENSDARG00000035970

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066477 False 3997 mRNA 0.47 23 40228422 40499386
TCONS_00066478 False 386 processed_transcript 0.47 2 40454712 40460332
TCONS_00066479 False 774 processed_transcript 0.51 6 40470655 40483951
TCONS_00066480 True 295 lncRNA 0.35 2 40473508 40478245

Neighbor

gene id symbol gene type direction distance location
XLOC_033958 ncapg2 coding upstream 820 40205394 ~ 40227602 (+)
XLOC_033957 esyt2b coding upstream 26197 40148213 ~ 40202225 (+)
XLOC_033956 si:ch73-174h16.4 coding upstream 126379 40093662 ~ 40102043 (+)
XLOC_033955 MAF1 coding upstream 136406 40081630 ~ 40092016 (+)
XLOC_033954 sorcs2 coding upstream 170650 39757608 ~ 40057772 (+)
XLOC_033961 mnx1 coding downstream 138824 40638210 ~ 40641006 (+)
XLOC_033962 lmbr1 coding downstream 158617 40658003 ~ 40708140 (+)
XLOC_033963 CU041319.1 coding downstream 371245 40870631 ~ 40870748 (+)
XLOC_033964 shha coding downstream 384626 40884012 ~ 40893295 (+)
XLOC_033965 NA coding downstream 463342 40962728 ~ 41104337 (+)
XLOC_033951 BX908792.2 non-coding upstream 514648 39713215 ~ 39713774 (+)
XLOC_033931 BX957297.4 non-coding upstream 1549890 38678418 ~ 38678532 (+)
XLOC_033929 BX957297.3 non-coding upstream 1578893 38649136 ~ 38649529 (+)
XLOC_033922 NA non-coding upstream 1881943 38315655 ~ 38346479 (+)
XLOC_033917 BX323797.2 non-coding upstream 1980675 38245927 ~ 38247747 (+)
XLOC_033966 AL772146.1 non-coding downstream 613515 41112901 ~ 41113295 (+)
XLOC_033975 BX005319.1 non-coding downstream 960267 41459653 ~ 41460435 (+)
XLOC_033976 BX005319.2 non-coding downstream 1083158 41582544 ~ 41582659 (+)

Expression


Co-expression Network