XLOC_033962 (lmbr1)


Basic Information

Item Value
gene id XLOC_033962
gene name lmbr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 40658003 ~ 40708140 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066483
ATGGAAGACGATGTGACGATCAGAGAGCAGAATTTCCACAGCCAAGTGCGCGAGTACATCGTCTGCTTCCTCTTGTTTGCAGTACTGTACATTGTGTCGTACTGCATCATCTCACAGTACAAGAGGAAAAGTGATGACCAGGAAGATGAGGATGCCATTGTCAACAGAATATCTATGTACCTGTGTACATTTACACTGGCGGTGTCTGGAGGTGCTGTCCTCCTTTTACCATTCTCTATAATCAGCAATGAGATCCTGCTTTCTCTTCCAAAAAACTACTATATACAATGGCTCAACGGATCTCTCATACATGGCCTGTGGAACCTGGTCTCCCTCTTCTCAAATCTCAGTCTTTTTGTGCTGATGCCTTTTGCCTACTTCTTCCTGGAGTCCGAAGGCTTTGCTGGTTCCAAAAAGGGCATAAAGGCTCGAGTGCTGGAGACGTTTGTCATGCTCTTTCTGCTGGGTCTCCTCATCCTGGGCATCGTATGGGTGGCGTCTGCTCTCATTGACAATGATGCTGCCAGCATGGAGTCACTTTACGATTTATGGGAGTTTTATCTGCCGTACCTCTACTCCTGCATCTCTCTGATGGGTGGCCTCTTGCTGCTCATGTGTACTCCAGTGGGACTGTCACGCATGTTCACAGTGATGGGCCAGTTACTAGTCAAACCCACTATTTTAGAGGATCTGGATGAGCAGATTTATTGCATACAGCTGCAGGAAGAGGCCTTGGAGCGAAGACTCAATggtgagtgtttgtttACGAGTgtaaaatatgacattttgCATCTCCACAAAGAGCTGGACAGCGTTCGCAATCAGAGACACAAACTCGAAAGGAGAAAGAAGGCCTCAGCCTGGGAAAAGAACCTCCTTTACCCCATAGTGATGCTGATCCTGCTTGCTGGAACAACGATTTCTGTTCTCCTGGTTGCCCTGAACATTGTGTACCTGCTTGTTGATGAGACAGCCATGCCAAAGGGTTCAACGGAGAGAGACATTGGCAATGCTTCTTTATCCACATTTGGAGTTGCCCAGGCGGTTGTTGAAATCATCCTCATGTTTTATCTGCTTGTCTCCTCTGTGGTTGGTTTCTACAGTCTTCGTATCTTTCAGGAACTCACTCCCAGAAAGGACGACACCAACATGACAACGATCATTGGTTGCTGTGTTTCCATACTAGTGCTGAGCTCAGCTCTGCCTGTGATGTCCCGAACACTCGGAATAACAAGGTTTGATCTCCTGGGTGATTTTGGACGATTTAACTGGCTTGGGAATTTTTACATCGTACTTTCGTACAATCTTCTGTTTGCTGTGGTGACCACATTGTGTCTGGTCCGAAAATTCACATCTGCTGTGCGAGAAGAACTTCTCAAAGCCCTCGGTCTGGATAAATTGAATCTGTCAACCAGCACGACGGATGCAGAGTCAGGGAAACATGTCGTCAACGGACATCAGAAAACTCTGTGAGGGGAAACGAATCATCCAGATATTCTGAAGCAAACATGTGTATGTGAATACAGTTGGCTTTTTCATTTTGAAATCCAGTCATGaagcattaaatattaaatggaCAATAATTAGAGAAAGAAG

Function

symbol description
lmbr1 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in Laurin-Sandrow syndrome; acheiropody; hypoplastic or aplastic tibia with polydactyly; and syndactyly type 4. Orthologous to human LMBR1 (limb development membrane protein 1).

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-090128-4 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in Laurin-Sandrow syndrome; acheiropody; hypoplastic or aplastic tibia with polydactyly; and syndactyly type 4. Orthologous to human LMBR1 (limb development membrane protein 1).

Ensembl:

ensembl_id ENSDARG00000024092

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066483 True 1596 mRNA 0.46 18 40658003 40708140

Neighbor

gene id symbol gene type direction distance location
XLOC_033961 mnx1 coding upstream 16997 40638210 ~ 40641006 (+)
XLOC_033959 ptprn2 coding upstream 158617 40228422 ~ 40499386 (+)
XLOC_033960 dre-mir-153a coding upstream 172413 40485510 ~ 40485590 (+)
XLOC_033958 ncapg2 coding upstream 430401 40205394 ~ 40227602 (+)
XLOC_033957 esyt2b coding upstream 455778 40148213 ~ 40202225 (+)
XLOC_033963 CU041319.1 coding downstream 162491 40870631 ~ 40870748 (+)
XLOC_033964 shha coding downstream 175872 40884012 ~ 40893295 (+)
XLOC_033965 NA coding downstream 254588 40962728 ~ 41104337 (+)
XLOC_033966 AL772146.1 coding downstream 404761 41112901 ~ 41113295 (+)
XLOC_033967 puf60b coding downstream 438420 41146560 ~ 41158143 (+)
XLOC_033951 BX908792.2 non-coding upstream 944229 39713215 ~ 39713774 (+)
XLOC_033931 BX957297.4 non-coding upstream 1979471 38678418 ~ 38678532 (+)
XLOC_033929 BX957297.3 non-coding upstream 2008474 38649136 ~ 38649529 (+)
XLOC_033922 NA non-coding upstream 2311524 38315655 ~ 38346479 (+)
XLOC_033975 BX005319.1 non-coding downstream 751513 41459653 ~ 41460435 (+)
XLOC_033976 BX005319.2 non-coding downstream 874404 41582544 ~ 41582659 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_12094316_12125431 NA coding CI01000026 null 12094316 ~ 12126264 (+)