XLOC_033967 (puf60b)


Basic Information

Item Value
gene id XLOC_033967
gene name puf60b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41146560 ~ 41158143 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066489
GGCTCGCCGCTGTTTGAGACCACGTGACCAGCGTCAGTCAGAGGAGGCCGCGCGCAGCTCCAGTCTCTGCTGTGTTTCTGTGCTGTTGCAGAGTTTTCAATGTGGATCACTACATGGCGGTAATAACGCGGAACACTGCGATCACTGTAAAATTGTGAGTGCTTTGCAGACAAGTCACTGGCTTCACGACCCTGGTTGGCATATAAGGTTCGCCTCATAGTGAGGCAAAGGTCTGATGATGGAGAATGGACAAGGCACAGGGTCAAAGCTTGGATTACCGCCTCTTACTCCTGAGCAACAGGAGGCGCTACAGAAGGCTAAGAAGTATGCCATGGAACAGAGCATCAAGAGTGTTTTAGTGAAACAGACCATCGCccaccagcagcagcagctcacAAACTTACAGGTGGCAGCACAGAGGCAGCGAGCTCTGGCCATCATGTGTCGTGTGTATGTGGGCTCCATTTATTACGAGCTGGGGGAAGATACCATCCGGCAGGCCTTCGCACCCTTTGGTCCCATTAAGAGCATCGATATGTCTTGGGATTCTGTCACCATGAAACATAAGGGCTTTGCCTTTGTGGAGTATGAGGTTCCTGAAGCGGCTCAGCTGGCCTTGGAGCAGATGAACTCTGTCATGCTGGGTGGGAGGAACATTAAGGTGGGTCGGCCAGGTAGCATTGGACAGGCGCAGCCTATCATTGAACAACTGGCAGAGGAGGCACGTGCCTACAACCGAATCTACGTAGCCTCTATCCACCCTGATCTGTCTGACGACGATATCAAGAGCGTCTTTGAGGCCTTTGGAAAGATTAAAAGTTGTATGCTGGCACGAGAACCCACCACGGGAAAGCACAAGGGCTTCGGATTTATCGAATATGAAAAGCCTCAGTCATCGCTGGATGCTGTCTCATCCATGAACCTGTTTGACCTCGGCGGTCAGTATCTAAGAGTGGGCAAGGCTGTTACTCCACCCATGCCTCTGCTAACACCTACAACTCCCGGAGGTTTGCCCCCTGCTGCAGCTGTGGCCGCTGCTGCTGCCACCGCCAAGATTACTGCCCAGGAGGCTGTTGCTGGGACAGTGCTGAGTTCTCTTGCCTCACCAGCTCACATTCTCAGTCAGCAAATGGGACTTCCACAGGCTGTACTGGCTGCCCAGGCCCCTGGCATTATCACAGGTCTGTCCACCACGAAAACAGTTTTCCACCTGGTGGGTTTGGTCAACCCAGTTCTGGCATCCCCACCAGTCACAGCACCTGCTTCTATGGGAACACCAACATCTGCAGTGCAATTGCACACAGAAGTGAAGAGAGAGGAAGACAGCAGGCGAACTGCAGAAGATCACAGTGCACCGGTTGGCAATGGACAAGACAGTGAACTGGAGCGTCTCAGCGTCAGCGCAAGTGCAGGAAGACAAGCGGCCATTCAGTCCAAGTCAACGGTTATGGTGTTGCGCAACATGGTTGGTCCAGAGGACATTGACGATGACCTGGAAGGGGAAGTGATGGAGGAATGTGGGAAGTACGGGGCTGTGAACCGGGTTATCATATACCAGGAGCGACAGGGTGAGGAGGATGATGCCGAGATAATAGTGAAGATCTTCGTGGAGTTTTCTGATGCTGGTGAAATGAACAAGGCCATCCAAGCTCTCAACAACCGCTGGTTTGCAGGTCGCAAGGTTGTTGCCGAGTTGTACGATCAAGATCGTTTTAATAGCAGTGACCTCACTGCGTAAGACTGTCCTGAAATGGCCACCTGTCCCATCTCTTGGCACTCGATCAGCTTTCATCACCGCTGCTTGAGATCTGGGCCTCTTTGAaacttgtaattatttttttattgatgttgatagtaataatattattggaACAAATCCCAACAGGGGGATTTAGCTTAGGACAAAAGAACATGCTCCTCATACATTTACTTTGTGTCACCTACTGTGAAAGAATTGCATTTTTAACAGTCGTTATCATTTGCAGGGTTTTGTTTTctaattttgaaagaaaaaatgcAATTTTCCCCATTCCTACCCCACTTTTTTACAAATGGCAACTTTGTTTCTCCACTGACATTGTGTTCAGACTCTAAACATTGTGTTGGTGACATTGGTTCTGGCTTTACCAAAACAATAAATTTCTCTAATATGCAG
>TCONS_00066490
CGCGCAGCTCCAGTCTCTGCTGTGTTTCTGTGCTGTTGCAGAGTTTTCAATGTGGATCACTACATGGCGATCACTGTAAAATTGTGAGTGCTTTGCAGACAAGTCACTGGCTTCACGACCCTGGTTGGCATATAAGGTTCGCCTCATAGTGAGGCAAAGGTCTGATGATGGAGAATGGACAAGGCACAGGGTCAAAGCTTGGATTACCGCCTCTTACTCCTGAGCAACAGGAGGCGCTACAGAAGGCTAAGAAGTATGCCATGGAACAGAGCATCAAGAGTGTTTTAGTGAAACAGACCATCGCccaccagcagcagcagctcacAAACTTACAGGTGGCAGCACAGAGGCAGCGAGCTCTGGCCATCATGTGTCGTGTGTATGTGGGCTCCATTTATTACGAGCTGGGGGAAGATACCATCCGGCAGGCCTTCGCACCCTTTGGTCCCATTAAGAGCATCGATATGTCTTGGGATTCTGTCACCATGAAACATAAGGGCTTTGCCTTTGTGGAGTATGAGGTTCCTGAAGCGGCTCAGCTGGCCTTGGAGCAGATGAACTCTGTCATGCTGGGTGGGAGGAACATTAAGGTGGGTCGGCCAGGTAGCATTGGACAGGCGCAGCCTATCATTGAACAACTGGCAGAGGAGGCACGTGCCTACAACCGAATCTACGTAGCCTCTATCCACCCTGATCTGTCTGACGACGATATCAAGAGCGTCTTTGAGGCCTTTGGAAAGATTAAAAGTTGTATGCTGGCACGAGAACCCACCACGGGAAAGCACAAGGGCTTCGGATTTATCGAATATGAAAAGCCTCAGTCATCGCTGGATGCTGTCTCATCCATGAACCTG
>TCONS_00066491
AGTCTCTGCTGTGTTTCTGTGCTGTTGCAGAGTTTTCAATGTGGATCACTACATGGCGGTAATAACGCGGAACACTGCGATCACTGTAAAATTGTGAGTGCTTTGCAGACAAGTCACTGGCTTCACGACCCTGGTTGGCATATAAGGTTCGCCTCATAGTGAGGCAAAGGTCTGATGATGGAGAATGGACAAGGCACAGGGTCAAAGCTTGGATTACCGCCTCTTACTCCTGAGCAACAGGAGGCGCTACAGAAGGCTAAGAAGTATGCCATGGAACAGAGCATCAAGAGTGTTTTAGTGAAACAGACCATCGCccaccagcagcagcagctcacAAACTTACAGGTGAGCTCATATGATGATCTAACTATGTAGAATACCATAaatgaatttgtttgtttgaccTTAAAACAATTGATGCTTTTTTGCAAACTAGTATATCTAAAGCTACATAGATTACCCACTGATTTGATCATGTAAAGGGTTCAGTCTTTCATTAACATAAATCATACACAAGCCTGAAAAACTGATCTTTTAGAATTTGATCC
>TCONS_00066492
GCTGTGTTTCTGTGCTGTTGCAGAGTTTTCAATGTGGATCACTACATGGCGATCACTGTAAAATTGTGAGTGCTTTGCAGACAAGTCACTGGCTTCACGACCCTGGTTGGCATATAAGGTTCGCCTCATAGTGAGGCAAAGGTCTGATGATGGAGAATGGACAAGGCACAGGGTCAAAGCTTGGATTACCGCCTCTTACTCCTGAGCAACAGGAGGCGCTACAGAAGGCTAAGAAGTATGCCATGGAACAGAGCATCAAGAGTGTTTTAGTGAAACAGACCATCGCccaccagcagcagcagctcacAAACTTACAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTCTCTCATCTTTACAATCGGTGGCAGCACAGAGGCAGCGAGCTCTGGCCATCATGTGTCGTGTGTATGTGGGCTCCATTTATTACGAGCTGGGGGAAGATACCATCCGGCAGGCCTTCGCACCCTTTGGTCCCATTAAGAGCATCGATATGTCTTGGGATTCTGTCACCATGAAACATAA
>TCONS_00066493
CTGTGTTTCTGTGCTGTTGCAGAGTTTTCAATGTGGATCACTACATGGCGGTAATAACGCGGAACACTGCGATCACTGTAAAATTGTGAGTGCTTTGCAGACAAGTCACTGGCTTCACGACCCTGGTTGGCATATAAGGTTCGCCTCATAGTGAGGCAAAGGTCTGATGATGGAGAATGGACAAGGCACAGGGTCAAAGCTTGGATTACCGCCTCTTACTCCTGAGCAACAGGAGGCGCTACAGAAGGCTAAGAAGTATGCCATGGAACAGAGCATCAAGAGTGTTTTAGTGAAACAGACCATCGCccaccagcagcagcagctcacAAACTTACAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTCTCTCATCTTTACAATCGGTGGCAGCACAGAGGCAGCGAGCTCTGGCCATCATGTGTCGTGTGTATGTGGGCTCCATTTATTACGAGCTGGGGGAAGATACCATCCGGCAGGCCTTCGCACCCTTTGGTCCCATTAAGAGCATCGATATGTCTTGGGATTCTGTCACCATGAAACATAAGGGCTTTGCCTTTGTGGAGTATGAGGTTCCTGAAGCGGCTCAGCTGGCCTTGGAGCAGATGAACTCTGTCATGCTGGGTGGGAGGAACATTAAGGTGGGTCGGCCAGGTAGCATTGGACAGGCGCAGCCTATCATTGAACAACTGGCAGAGGAGGCACGTGCCTACAACCGAATCTACGTAGCCTCTATCCACCCTGATCTGTCTGACGACGATATCAAGAGCGTCTTTGAGGCCTTTGGAAAGATTAAAAGTTGTATGCTGGCACGAGAACCCACCACGGGAAAGCACAAGGGCTTCGGATTTATCGAATATGAAAAGCCTCAGTCATCGCTGGATGCTGTCTCATCCATGAACCTGTTTGACCTCGGCGGTCAGTATCTAAGAGTGGGCAAGGCTGTTACTCCACCCATGCCTCTGCTAACACCTACAACTCCCGGAGGTTTGCCCCCTGCTGCAGCTGTGGCCGCTGCTGCTGCCACCGCCAAGATTACTGCCCAGGAGGCTGTTGCTGGGACAGTGCTGAGTTCTCTTGCCTCACCAGCTCACATTCTCAGTCAGCAAATGGGACTTCCACAGGCTGTACTGGCTGCCCAGGCCCCTGGCATTATCACAGGTCTGTCCACCACGAAAACAGTTTTCCACCTGGTGGGTTTGGTCAACCCAGTTCTGGCATCCCCACCAGTCACAGCACCTGCTTCTATGGGAACACCAACATCTGCAGTGCAATTGCACACAGAAGTGAAGAGAGAGGAAGACAGCAGGCGAACTGCAGAAGATCACAGTGCACCGGTTGGCAATGGACAAGACAGTGAACTGGAGCGTCTCAGCGTCAGCGCAAGTGCAGGAAGACAAGCGGCCATTCAGTCCAAGTCAACGGTTATGGTGTTGCGCAACATGGTTGGTCCAGAGGACATTGACGATGACCTGGAAGGGGAAGTGATGGAGGAATGTGGGAAGTACGGGGCTGTGAACCGGGTTATCATATACCAGGAGCGACAGGGTGAGGAGGATGATGCCGAGATAATAGTGAAGATCTTCGTGGAGTTTTCTGATGCTGGTGAAATGAACAAGGCCATCCAAGCTCTCAACAACCGCTGGTTTGCAGGTCGCAAGGTTGTTGCCGAGTTGTACGATCAAGATCGTTTTAATAGCAGTGACCTCACTGCGTAAGACTGTCCTGAAATGGCCACCTGTCCCATCTCTTGGCACTCGATCAGCTTTCATCACCGCTGCTTGAGATCTGGGCCTCTTTGAaacttgtaattatttttttattgatgttgatagtaataatattattggaACAAATCCCAACAGGGGGATTTAGCTTAGGACAAAAGAACATGCTCCTCATACATTTACTTTGTGTCACCTACTGTGAAAGAATTGCATTTTTAACAGTCGTTATCATTTGCAGGGTTTTGTTTTctaattttgaaagaaaaaatgcAATTTTCCCCATTCCTACCCCACTTTTTTACAAATGGCAACTTTGTTTCTCCACTGACATTGTGTTCAGACTCTAAACATTGTGTTGGTGACATTGGTTCTGGCTTTACCAAAACAATAAATTTCTCTAATATGCA
>TCONS_00066494
AGAGTTTTCAATGTGGATCACTACATGGCGGTAATAACGCGGAACACTGCGACAAGTCACTGGCTTCACGACCCTGGTTGGCATATAAGGTTCGCCTCATAGTGAGGCAAAGGTCTGATGATGGAGAATGGACAAGGCACAGGGTCAAAGCTTGGATTACCGCCTCTTACTCCTGAGCAACAGGAGGCGCTACAGAAGGCTAAGAAGTATGCCATGGAACAGAGCATCAAGAGTGTTTTAGTGAAACAGACCATCGCccaccagcagcagcagctcacAAACTTACAGGTGGCAGCACAGAGGCAGCGAGCTCTGGCCATCATGTGTCGTGTGTATGTGGGCTCCATTTATTACGAGCTGGGGGAAGATACCATCCGGCAGGCCTTCGCACCCTTTGGTCCCATTAAGAGCATCGATATGTCTTGGGATTCTGTCACCATGAAACATAAGGGCTTTGCCTTTGTGGAGTATGAGGTTCCTGAAGCGGCTCAGCTGGCCTTGGAGCAGATGAACTCTGTCATGCTGGGTGGGAGGAACATTAAGGTGGGTCGGCCAGGTAGCATTGGACAGGCGCAGCCTATCATTGAACAACTGGCAGAGGAGGCACGTGCCTACAACCGAATCTACGTAGCCTCTATCCACCCTGATCTGTCTGACGACGATATCAAGAGCGTCTTTGAGGCCTTTGGAAAGATTAAAAGTTGTATGCTGGCACGAGAACCCACCACGGGAAAGCACAAGGGCTTCGGATTTATCGAATATGAAAAGCCTCAGTCATCGCTGGATGCTGTCTCATCCATGAACCTGTTTGACCTCGGCGGTCAGTATCTAAGAGTGGGCAAGGCTGTTACTCCACCCATGCCTCTG
>TCONS_00066495
AATAACGCGGAACACTGCGATCACTGTAAAATTGTGAGTGCTTTGCAGACAAGTCACTGGCTTCACGACCCTGGTTGGCATATAAGGTTCGCCTCATAGTGAGGCAAAGGTCTGATGATGGAGAATGGACAAGGCACAGGGTCAAAGCTTGGATTACCGCCTCTTACTCCTGAGCAACAGGAGGCGCTACAGAAGGCTAAGAAGTATGCCATGGAACAGAGCATCAAGAGTGTTTTAGTGAAACAGACCATCGCccaccagcagcagcagctcacAAACTTACAGGTGGCAGCACAGAGGCAGCGAGCTCTGGCCATCATGTGTCGTGTGTATGTGGGCTCCATTTATTACGAGCTGGGGGAAGATACCATCCGGCAGGCCTTCGCACCCTTTGGTCCCATTAAGAGCATCGATATGTCTTGGGATTCTGTCACCATGAAACATAAGGGCTTTGCCTTTGTGGAGTATGAGGTTCCTGAAGCGGCTCAGCTGGCCTTGGAGCAGATGAACTCTGTCATGCTGGGTGGGAGGAACATTAAGGTGGGTCGGCCAGGTAGCATTGGACAGGCGCAGCCTATCATTGAACAACTGGCAGAGGAGGCACGTGCCTACAACCGAATCTACGTAGCCTCTATCCACCCTGATCTGTCTGACGACGATATCAAGAGCGTCTTTGAGGCCTTTGGAAAGATTAAAAGTTGTATGCTGGCACGAGAACCCACCACGGGAAAGCACAAGGGCTTCGGATTTATCGAATATGAAAAGCCTCAGTCATCGCTGGATGCTGTCTCATCCATGAACCTGTTTGACCTCGGCGGTCAGTATCTAAGAGTGGGCAAGGCTGTTACTCCACCCATGCCTCTGCTAACACCTACAACTCCCGGAGGTTTGCCCCCTGCTGCAGCTGTGGCCGCTGCTGCTGCCACCGCCAAGATTACTGCCCAGGAGGCTGTTGCTGGGACAGTGCTGAGTTCTCTTGCCTCACCAGCTCACATTCTCAGTCAGCAAATGGGACTTCCACAGGCTGTACTGGCTGCCCAGGCCCCTGGCATTATCACAGGTGTGACACCTGCTCGCCCCACTCTCCCTGTAGTCCCGCAGGTGGGTTTGGTCAACCCAGTTCTGGCATCCCCACCAGTCACAGCACCTGCTTCTATGGGAACACCAACATCTGCAGTGCAATTGCACACAGAAGTGAAGAGAGAGGAAGACAGCAGGCGAACTGCAGAAGATCACAGTGCACCGGTTGGCAATGGACAAGACAGTGAACTGGAGCGTCTCAGCGTCAGCGCAAGTGCAGGAAGACAAGCGGCCATTCAGTCCAAGTCAACGGTTATGGTGTTGCGCAACATGGTTGGTCCAGAGGACATTGACGATGACCTGGAAGGGGAAGTGATGGAGGAATGTGGGAAGTACGGGGCTGTGAACCGGGTTATCATATACCAGGAGCGACAGGGTGAGGAGGATGATGCCGAGATAATAGTGAAGATCTTCGTGGAGTTTTCTGATGCTGGTGAAATGAACAAGGCCATCCAAGCTCTCAACAACCGCTGGTTTGCAGGTCGCAAGGTTGTTGCCGAGTTGTACGATCAAGATCGTTTTAATAGCAGTGACCTCACTGCGTAAGACTGTCCTGAAATGGCCACCTGTCCCATCTCTTGGCACTCGATCAGCTTTCATCACCGCTGCTTGAGATCTGGGCCTCTTTGAaacttgtaattatttttttattgatgttgatagtaataatattattggaACAAATCCCAACAGGGGGATTTAGCTTAGGACAAAAGAACATGCTCCTCATACATTTACTTTGTGTCACCTACTGTGAAAGAATTGCATTTTTAACAGTCGTTATCATTTGCAGGGTTTTGTTTTctaattttgaaagaaaaaatgcAATTTTCCCCATTCCTACCCCACTTTTTTACAAATGGCAACTTTGTTTCTCCACTGACATTGTGTTCAGACTCTAAACATTGTGTTGGTGACATTGGTTCTGGCTTTACCAAAACAATAAATTTCTCTAATATGC
>TCONS_00066496
ATCACTGTAAAATTGTGAGTGCTTTGCAGACAAGTCACTGGCTTCACGACCCTGGTTGGCATATAAGGTTCGCCTCATAGTGAGGCAAAGGTCTGATGATGGAGAATGGACAAGGCACAGGGTCAAAGCTTGGATTACCGCCTCTTACTCCTGAGCAACAGGAGGCGCTACAGAAGGCTAAGAAGTATGCCATGGAACAGAGCATCAAGAGTGTTTTAGTGAAACAGACCATCGCccaccagcagcagcagctcacAAACTTACAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTCTCTCATCTTTACAATCGGTGGCAGCACAGAGGCAGCGAGCTCTGGCCATCATGTGTCGTGTGTATGTGGGCTCCATTTATTACGAGCTGGGGGAAGATACCATCCGGCAGGCCTTCGCACCCTTTGGTCCCATTAAGAGCATCGATATGTCTTGGGATTCTGTCACCATGAAACATAAGGGCTTTGCCTTTGTGGAGTATGAGGTTCCTGAAGCGGCTCAGCTGGCCTTGGAGCAGATGAACTCTGTCATGCTGGGTGGGAGGAACATTAAGGTGGGTCGGCCAGGTAGCATTGGACAGGCGCAGCCTATCATTGAACAACTGGCAGAGGAGGCACGTGCCTACAACCGAATCTACGTAGCCTCTATCCACCCTGATCTGTCTGACGACGATATCAAGAGCGTCTTTGAGGCCTTTGGAAAGATTAAAAGTTGTATGCTGGCACGAGAACCCACCACGGGAAAGCACAAGGGCTTCGGATTTATCGAATATGAAAAGCCTCAGTCATCGCTGGATGCTGTCTCATCCATGAACCTGTTTGACCTCGGCGGTCAGTATCTAAGAGTGGGCAAGGCTGTTACTCCACCCATGCCTCTGCTAACACCTACAACTCCCGGAGGTTTGCCCCCTGCTGCAGCTGTGGCCGCTGCTGCTGCCACCGCCAAGATTACTGCCCAGGAGGCTGTTGCTGGGACAGTGCTGAGTTCTCTTGCCTCACCAGCTCACATTCTCAGTCAGCAAATGGGACTTCCACAGGCTGTACTGGCTGCCCAGGCCCCTGGCATTATCACAGGTGTGACACCTGCTCGCCCCACTCTCCCTGTAGTCCCGCAGGTGGGTTTGGTCAACCCAGTTCTGGCATCCCCACCAGTCACAGCACCTGCTTCTATGGGAACACCAACATCTGCAGTGCAATTGCACACAGAAGTGAAGAGAGAGGAAGACAGCAGGCGAACTGCAGAAGATCACAGTGCACCGGTTGGCAATGGACAAGACAGTGAACTGGAGCGTCTCAGCGTCAGCGCAAGTGCAGGAAGACAAGCGGCCATTCAGTCCAAGTCAACGGTTATGGTGTTGCGCAACATGGTTGGTCCAGAGGACATTGACGATGACCTGGAAGGGGAAGTGATGGAGGAATGTGGGAAGTACGGGGCTGTGAACCGGGTTATCATATACCAGGAGCGACAGGGTGAGGAGGATGATGCCGAGATAATAGTGAAGATCTTCGTGGAGTTTTCTGATGCTGGTGAAATGAACAAGGCCATCCAAGCTCTCAACAACCGCTGGTTTGCAGGTCGCAAGGTTGTTGCCGAGTTGTACGATCAAGATCGTTTTAATAGCAGTGACCTCACTGCGTAA

Function

symbol description
puf60b Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome; mRNA splice site selection; and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing; apoptotic process; and mRNA processing. Predicted to be located in nucleus. Is expressed in endocrine system; nervous system; pectoral fin; pharynx; and somite. Orthologous to human PUF60 (poly(U) binding splicing factor 60).

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006376 mRNA splice site selection biological_process
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-116 Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome; mRNA splice site selection; and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing; apoptotic process; and mRNA processing. Predicted to be located in nucleus. Is expressed in endocrine system; nervous system; pectoral fin; pharynx; and somite. Orthologous to human PUF60 (poly(U) binding splicing factor 60).

Ensembl:

ensembl_id ENSDARG00000001241

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066489 False 2155 mRNA 0.50 11 41146560 41158143
TCONS_00066490 False 854 mRNA 0.51 8 41146610 41155239
TCONS_00066491 False 548 lncRNA 0.42 4 41146621 41150573
TCONS_00066492 False 529 mRNA 0.50 6 41146628 41152593
TCONS_00066493 False 2136 mRNA 0.49 12 41146629 41158142
TCONS_00066494 False 867 mRNA 0.51 8 41146649 41155299
TCONS_00066495 False 2041 mRNA 0.49 11 41146681 41158141
TCONS_00066496 True 1658 mRNA 0.53 11 41147732 41157726

Neighbor

gene id symbol gene type direction distance location
XLOC_033966 AL772146.1 coding upstream 33265 41112901 ~ 41113295 (+)
XLOC_033965 NA coding upstream 42223 40962728 ~ 41104337 (+)
XLOC_033964 shha coding upstream 253265 40884012 ~ 40893295 (+)
XLOC_033963 CU041319.1 coding upstream 275812 40870631 ~ 40870748 (+)
XLOC_033962 lmbr1 coding upstream 438420 40658003 ~ 40708140 (+)
XLOC_033968 scrib coding downstream 2082 41160225 ~ 41275897 (+)
XLOC_033969 si:dkey-86l18.10 coding downstream 137831 41295974 ~ 41302860 (+)
XLOC_033970 rgs9bp coding downstream 145429 41303572 ~ 41312197 (+)
XLOC_033971 MCUR1 coding downstream 155425 41313568 ~ 41318214 (+)
XLOC_033972 dph2 coding downstream 164264 41322407 ~ 41330966 (+)
XLOC_033960 dre-mir-153a non-coding upstream 660970 40485510 ~ 40485590 (+)
XLOC_033951 BX908792.2 non-coding upstream 1432786 39713215 ~ 39713774 (+)
XLOC_033975 BX005319.1 non-coding downstream 301510 41459653 ~ 41460435 (+)
XLOC_033976 BX005319.2 non-coding downstream 424401 41582544 ~ 41582659 (+)
XLOC_033978 AL928906.1 non-coding downstream 603118 41761261 ~ 41761379 (+)
XLOC_033982 CU570782.3 non-coding downstream 1155631 42313774 ~ 42313888 (+)
XLOC_033983 NA non-coding downstream 1209296 42367439 ~ 42393494 (+)

Expression


Co-expression Network