RNA id: TCONS_00066496


Basic Information

Item Value
RNA id TCONS_00066496
length 1658
RNA type mRNA
GC content 0.53
exon number 11
gene id XLOC_033967
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41146560 ~ 41158143 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCACTGTAAAATTGTGAGTGCTTTGCAGACAAGTCACTGGCTTCACGACCCTGGTTGGCATATAAGGTTCGCCTCATAGTGAGGCAAAGGTCTGATGATGGAGAATGGACAAGGCACAGGGTCAAAGCTTGGATTACCGCCTCTTACTCCTGAGCAACAGGAGGCGCTACAGAAGGCTAAGAAGTATGCCATGGAACAGAGCATCAAGAGTGTTTTAGTGAAACAGACCATCGCccaccagcagcagcagctcacAAACTTACAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTCTCTCATCTTTACAATCGGTGGCAGCACAGAGGCAGCGAGCTCTGGCCATCATGTGTCGTGTGTATGTGGGCTCCATTTATTACGAGCTGGGGGAAGATACCATCCGGCAGGCCTTCGCACCCTTTGGTCCCATTAAGAGCATCGATATGTCTTGGGATTCTGTCACCATGAAACATAAGGGCTTTGCCTTTGTGGAGTATGAGGTTCCTGAAGCGGCTCAGCTGGCCTTGGAGCAGATGAACTCTGTCATGCTGGGTGGGAGGAACATTAAGGTGGGTCGGCCAGGTAGCATTGGACAGGCGCAGCCTATCATTGAACAACTGGCAGAGGAGGCACGTGCCTACAACCGAATCTACGTAGCCTCTATCCACCCTGATCTGTCTGACGACGATATCAAGAGCGTCTTTGAGGCCTTTGGAAAGATTAAAAGTTGTATGCTGGCACGAGAACCCACCACGGGAAAGCACAAGGGCTTCGGATTTATCGAATATGAAAAGCCTCAGTCATCGCTGGATGCTGTCTCATCCATGAACCTGTTTGACCTCGGCGGTCAGTATCTAAGAGTGGGCAAGGCTGTTACTCCACCCATGCCTCTGCTAACACCTACAACTCCCGGAGGTTTGCCCCCTGCTGCAGCTGTGGCCGCTGCTGCTGCCACCGCCAAGATTACTGCCCAGGAGGCTGTTGCTGGGACAGTGCTGAGTTCTCTTGCCTCACCAGCTCACATTCTCAGTCAGCAAATGGGACTTCCACAGGCTGTACTGGCTGCCCAGGCCCCTGGCATTATCACAGGTGTGACACCTGCTCGCCCCACTCTCCCTGTAGTCCCGCAGGTGGGTTTGGTCAACCCAGTTCTGGCATCCCCACCAGTCACAGCACCTGCTTCTATGGGAACACCAACATCTGCAGTGCAATTGCACACAGAAGTGAAGAGAGAGGAAGACAGCAGGCGAACTGCAGAAGATCACAGTGCACCGGTTGGCAATGGACAAGACAGTGAACTGGAGCGTCTCAGCGTCAGCGCAAGTGCAGGAAGACAAGCGGCCATTCAGTCCAAGTCAACGGTTATGGTGTTGCGCAACATGGTTGGTCCAGAGGACATTGACGATGACCTGGAAGGGGAAGTGATGGAGGAATGTGGGAAGTACGGGGCTGTGAACCGGGTTATCATATACCAGGAGCGACAGGGTGAGGAGGATGATGCCGAGATAATAGTGAAGATCTTCGTGGAGTTTTCTGATGCTGGTGAAATGAACAAGGCCATCCAAGCTCTCAACAACCGCTGGTTTGCAGGTCGCAAGGTTGTTGCCGAGTTGTACGATCAAGATCGTTTTAATAGCAGTGACCTCACTGCGTAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006376 mRNA splice site selection biological_process
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-116 Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome; mRNA splice site selection; and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing; apoptotic process; and mRNA processing. Predicted to be located in nucleus. Is expressed in endocrine system; nervous system; pectoral fin; pharynx; and somite. Orthologous to human PUF60 (poly(U) binding splicing factor 60).

Ensembl:

ensembl_id ENSDART00000185388

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068919 lncRNA upstream 43395 40962798 ~ 41104337 (+) False XLOC_033965
TCONS_00068917 lncRNA upstream 53567 40962728 ~ 41094165 (+) False XLOC_033965
TCONS_00068918 lncRNA upstream 87100 40962798 ~ 41060632 (+) False XLOC_033965
TCONS_00068587 lncRNA upstream 87100 40963386 ~ 41060632 (+) True XLOC_033965
TCONS_00066486 lncRNA upstream 135012 40963328 ~ 41012720 (+) False XLOC_033965
TCONS_00066501 lncRNA downstream 83596 41241322 ~ 41245090 (+) False XLOC_033968
TCONS_00068920 lncRNA downstream 94424 41252150 ~ 41255247 (+) False XLOC_033968
TCONS_00066506 lncRNA downstream 98781 41256507 ~ 41257714 (+) False XLOC_033968
TCONS_00068921 lncRNA downstream 138250 41295976 ~ 41302860 (+) False XLOC_033969
TCONS_00068922 lncRNA downstream 138376 41296102 ~ 41302860 (+) False XLOC_033969
TCONS_00066485 mRNA upstream 254437 40884012 ~ 40893295 (+) True XLOC_033964
TCONS_00066483 mRNA upstream 439592 40658003 ~ 40708140 (+) True XLOC_033962
TCONS_00066482 mRNA upstream 506726 40638210 ~ 40641006 (+) True XLOC_033961
TCONS_00066477 mRNA upstream 648346 40228422 ~ 40499386 (+) False XLOC_033959
TCONS_00066476 mRNA upstream 920130 40205410 ~ 40227602 (+) True XLOC_033958
TCONS_00066497 mRNA downstream 2499 41160225 ~ 41273392 (+) False XLOC_033968
TCONS_00066498 mRNA downstream 2499 41160225 ~ 41273574 (+) False XLOC_033968
TCONS_00066500 mRNA downstream 2499 41160225 ~ 41275897 (+) False XLOC_033968
TCONS_00066499 mRNA downstream 2499 41160225 ~ 41275897 (+) False XLOC_033968
TCONS_00066507 mRNA downstream 107892 41265618 ~ 41273706 (+) True XLOC_033968
TCONS_00066488 other upstream 34437 41112901 ~ 41113295 (+) True XLOC_033966
TCONS_00066484 other upstream 276984 40870631 ~ 40870748 (+) True XLOC_033963
TCONS_00066481 other upstream 662142 40485510 ~ 40485590 (+) True XLOC_033960
TCONS_00066479 other upstream 663781 40470655 ~ 40483951 (+) False XLOC_033959
TCONS_00066478 other upstream 687400 40454712 ~ 40460332 (+) False XLOC_033959
TCONS_00066502 other downstream 90444 41248170 ~ 41254395 (+) False XLOC_033968
TCONS_00066503 other downstream 94967 41252693 ~ 41254437 (+) False XLOC_033968
TCONS_00066504 other downstream 94971 41252697 ~ 41254029 (+) False XLOC_033968
TCONS_00066505 other downstream 96895 41254621 ~ 41255247 (+) False XLOC_033968
TCONS_00066511 other downstream 143595 41301321 ~ 41302612 (+) True XLOC_033969

Expression Profile

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