Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_033968 |
| gene name | scrib |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 41160225 ~ 41275897 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| scrib | Enables protein heterodimerization activity. Acts upstream of or within several processes, including establishment of mitotic spindle orientation; morphogenesis of an epithelium; and nervous system development. Located in membrane. Is expressed in brain; neural tube; and secondary posterior lateral line primordium. Orthologous to human SCRIB (scribble planar cell polarity protein). |
| id | name | namespace |
|---|---|---|
| GO:0001736 | establishment of planar polarity | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0001764 | neuron migration | biological_process |
| GO:0050918 | positive chemotaxis | biological_process |
| GO:0016477 | cell migration | biological_process |
| GO:0098609 | cell-cell adhesion | biological_process |
| GO:0097120 | receptor localization to synapse | biological_process |
| GO:0098887 | neurotransmitter receptor transport, endosome to postsynaptic membrane | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0043065 | positive regulation of apoptotic process | biological_process |
| GO:0000132 | establishment of mitotic spindle orientation | biological_process |
| GO:0090630 | activation of GTPase activity | biological_process |
| GO:0045197 | establishment or maintenance of epithelial cell apical/basal polarity | biological_process |
| GO:0035089 | establishment of apical/basal cell polarity | biological_process |
| GO:0001841 | neural tube formation | biological_process |
| GO:0043113 | receptor clustering | biological_process |
| GO:0071679 | commissural neuron axon guidance | biological_process |
| GO:0008283 | cell population proliferation | biological_process |
| GO:0098968 | neurotransmitter receptor transport postsynaptic membrane to endosome | biological_process |
| GO:0097475 | motor neuron migration | biological_process |
| GO:0033564 | anterior/posterior axon guidance | biological_process |
| GO:0045930 | negative regulation of mitotic cell cycle | biological_process |
| GO:0060027 | convergent extension involved in gastrulation | biological_process |
| GO:0060561 | apoptotic process involved in morphogenesis | biological_process |
| GO:0001944 | vasculature development | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0097060 | synaptic membrane | cellular_component |
| GO:0031252 | cell leading edge | cellular_component |
| GO:0042995 | cell projection | cellular_component |
| GO:0042734 | presynaptic membrane | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0005911 | cell-cell junction | cellular_component |
| GO:0005912 | adherens junction | cellular_component |
| GO:0030027 | lamellipodium | cellular_component |
| GO:0008328 | ionotropic glutamate receptor complex | cellular_component |
| GO:0014069 | postsynaptic density | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016323 | basolateral plasma membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| ko04390 | Hippo signaling pathway |
| ko04391 | Hippo signaling pathway - fly |
| ko04530 | Tight junction |
| ko05203 | Viral carcinogenesis |
| ko05165 | Human papillomavirus infection |
| id | description |
|---|---|
| ZDB-GENE-030616-572 | Enables protein heterodimerization activity. Acts upstream of or within several processes, including establishment of mitotic spindle orientation; morphogenesis of an epithelium; and nervous system development. Located in membrane. Is expressed in brain; neural tube; and secondary posterior lateral line primordium. Orthologous to human SCRIB (scribble planar cell polarity protein). |
| ensembl_id | ENSDARG00000000861 ENSDARG00000105823 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00066497 | False | 5175 | mRNA | 0.52 | 40 | 41160225 | 41273392 |
| TCONS_00066498 | False | 5600 | mRNA | 0.52 | 43 | 41160225 | 41273574 |
| TCONS_00066500 | False | 8074 | mRNA | 0.48 | 44 | 41160225 | 41275897 |
| TCONS_00066499 | False | 7921 | mRNA | 0.48 | 43 | 41160225 | 41275897 |
| TCONS_00066501 | False | 756 | lncRNA | 0.47 | 2 | 41241322 | 41245090 |
| TCONS_00066502 | False | 736 | processed_transcript | 0.50 | 7 | 41248170 | 41254395 |
| TCONS_00068920 | False | 3098 | lncRNA | 0.38 | 1 | 41252150 | 41255247 |
| TCONS_00066503 | False | 213 | processed_transcript | 0.52 | 2 | 41252693 | 41254437 |
| TCONS_00066504 | False | 104 | processed_transcript | 0.44 | 2 | 41252697 | 41254029 |
| TCONS_00066505 | False | 627 | TEC | 0.38 | 1 | 41254621 | 41255247 |
| TCONS_00066506 | False | 532 | lncRNA | 0.46 | 2 | 41256507 | 41257714 |
| TCONS_00066507 | True | 674 | mRNA | 0.47 | 5 | 41265618 | 41273706 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_033967 | puf60b | coding | upstream | 2082 | 41146560 ~ 41158143 (+) |
| XLOC_033966 | AL772146.1 | coding | upstream | 46930 | 41112901 ~ 41113295 (+) |
| XLOC_033965 | NA | coding | upstream | 55888 | 40962728 ~ 41104337 (+) |
| XLOC_033964 | shha | coding | upstream | 266930 | 40884012 ~ 40893295 (+) |
| XLOC_033963 | CU041319.1 | coding | upstream | 289477 | 40870631 ~ 40870748 (+) |
| XLOC_033969 | si:dkey-86l18.10 | coding | downstream | 20077 | 41295974 ~ 41302860 (+) |
| XLOC_033970 | rgs9bp | coding | downstream | 27675 | 41303572 ~ 41312197 (+) |
| XLOC_033971 | MCUR1 | coding | downstream | 37671 | 41313568 ~ 41318214 (+) |
| XLOC_033972 | dph2 | coding | downstream | 46510 | 41322407 ~ 41330966 (+) |
| XLOC_033973 | garem | coding | downstream | 64623 | 41340520 ~ 41350398 (+) |
| XLOC_033960 | dre-mir-153a | non-coding | upstream | 674635 | 40485510 ~ 40485590 (+) |
| XLOC_033951 | BX908792.2 | non-coding | upstream | 1446451 | 39713215 ~ 39713774 (+) |
| XLOC_033975 | BX005319.1 | non-coding | downstream | 183756 | 41459653 ~ 41460435 (+) |
| XLOC_033976 | BX005319.2 | non-coding | downstream | 306647 | 41582544 ~ 41582659 (+) |
| XLOC_033978 | AL928906.1 | non-coding | downstream | 485364 | 41761261 ~ 41761379 (+) |
| XLOC_033982 | CU570782.3 | non-coding | downstream | 1037877 | 42313774 ~ 42313888 (+) |
| XLOC_033983 | NA | non-coding | downstream | 1091542 | 42367439 ~ 42393494 (+) |
