XLOC_033973 (garem)


Basic Information

Item Value
gene id XLOC_033973
gene name garem
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41340520 ~ 41350398 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066518
CGAGCAACCGCTGGAGCAACAGGGAAGAGGAAATCGCCGCTCCAGCTCGAGATCGTTACGGTATGGGATACATGGCATTTCCTGTCAGTGTAAATAGACGGTCGGCTGACATGGCTTCACGTACTGTCCACGGCTGCCTCTGAGTAAACAAAAGGGCATTTACCGAAGCTTTCTCCATGACAGAGCCGTTCTTCACTGCAGATGCATGCGGCGGCGGGCTAACGTGCAGATGTTAGCGAGCTAACATGGACCTTGGATCGATGCTGTACAACAGTTTTAACAATATAACATGGAGCACAACGACACTACCCTTGGACAGACTAATTAGTTCCTACAGACTGCCACAGATCGTCAAGTTGGACAGCGGAGAATCGGTGGAAGGGTTGAGAGAAAATGACTACCTCTTGATTCATTCATGCCGGCAGTGGACCACAATTACCGCCCATAGCCTAGAGGAGGGCCATTATGTCATCGGACCGAAAATCGAGATCCCTGTCCATTATGAGGGTCAGTTTAAGCTGCTCGAGCAGGACAGGGACATTAAGGAGCCTGTGCAGTACTACAACAGTGTGGAGGAGGTGGCCAAAGCTTTTCCTGAGCGAGTGTATGTCATGGAGGAAATATCCTTCAATTTCAAGATGGCATCAGGAGAATCTAATGAGGACACTGAAGTGTACAACATCACACTAAGCACAGGGGATGAGCTGACGTTAATGGGCCAGGCCGAGCTCCTCTATGCCAAATCATCTAGGGAAAAGTCACGCTTCAACACTATTTTCAAGCGCATTGGCAAGCTCAACTCCATCAGCAAGCTTGGCCGTGGGAAGATGCCCTGCCTTATCTGCATGAACCACCGCACCAATGAGAGCATCAGCCTGCCTTTCCAGTGCCGCGGCCGCTTCAGCACCTGCTCCCCGCTGGAGCTGCAGATGCAGGAAGGAGAACATACTATTCGCACAATCGTGGAGAAGACCAGGTTACCTGTGAATGTCATGGTGCCCAGCAGCCCACCACGTAATCCTCACGACCTTCATTTGATCCGCGAAGGCCACAGATACAAGCTGGTCAACATCCAGACAAAGACAGTGGTGGTGTGTTGTGCGTTACGTTCGAACAAAATACTGCCAGTGCACTTCCCCTTACATGTGTCCACGGCACTGCCACGTTTACTGGTGCCCGAAGGGCTGCTTCAAGGAGAATCCTGGTTCGAGACGGTGGTCCACCGATGGTTCACTTACTGCCAGGAACAGTTCGACATTGATGACTACTCTAGGGCTGTCCGGGACGTGCGGGTGGACTGGATTGAGGATGGCAAGAGTCCGAAAAAAAGTAGTGCAGGTGGAACAGGAAGTGGGAGCGCTATCTGCAATAGCAGTGGAAGCGGGAGCAATGGCTGCCCGTCACATTTACATCTGCCAAGTTCTCTGAGCTCAGCTCGAGATGAGCTCACGCAGTCATTTCATCGCCTGTCGGTATGTGTCTACGGAAACAATCTCCATGGGAACAGTGAGGTGAATCTTCAGGGTTGCGTGAGCCTATGTGGAGATTGTGCACCAGCAGAACCGCCTGATGCAGATTATCTGTTCCCTGAACTGCAGGAGAATTCTTCAGGCTCTCTAAAATCAGATGTGCCCTATGAGGAGCTTTGGTTGGATCATGTTAAGAATGCTGGACCTGTTCTAGACCACAACGAGGGTGTCCGAGGAAACTCACTGTCCTCTGGCTGCACGACTGCACTGCCATACCCTAAAGCAGGTCCTACAAGTGCTCTGCTCAGCGCAGATGTCAATCTACCTCCACCTCCGGTGCCTCCAAAGTCTGAAGCTGTGAAGGAGGAGTGCCGGTTGTTGAACGCTCCACCAATTCCACCGCGCAGCTCTAAACAGGCAGGCTCAAGCAGTGCCACAGTGCCATACCCTTCTGCCAAGCCACGTCAGAAAGATACCCGCTCTCCAAGCCCAACGCTGTCCTATTACTCGTCTGGTTTGCACAGCATAGGTGGAGAGGGCGAGTCTCAGATCGAGTCAGATGATCAGAACCATGCTTGTTACCCATGTAACTGGATCAGACCAGATGCCAGTGAAAGCTCCAAGCCTCTCCCTTGCCTCAATCCGTCAGTTAATGCCTCTTTCTCTCGCCTTTCCTGGCCAAACGATTTCTGCGGAGCTGACTCGTATAAAGGTGAGGACTTCCAATCTCTCCACTGCAGGAGTTACTCTAGCTATCCTCGAAAGAGGACTCCTGGAACTCCTAAGGCTTGTCCCTCAGGTTTGTTAGACTTTGATAAGCGAGCAAATTTTGAAGGGAAGGCTGTGTCCTCCAAGGTCCAGCAGGTTACCCAGTCTGCCCAGTTTTGCACCAAATCCACCAGCTACAACATGGATATGTGCAGAGACAAACCCACAGACGAATGTATCACTAAGCAAAGCCAGTCCTGCCCCATCTTGCCTCCAAGAACCCCTAAATGTACTGATGCAAAGAAAGATGCAGAAGCCGCCACTACAGATACGGCCGATGCAGACGCCGTGGAACTTGAGTCCAAAAGCTGCTCGCCTGATGGGCCACATCCTGGCACTACAGATGTATTCTCTGTTTCTCATCCTGTAGCTACAGGGTTGTCTTGGCAGCCACCAAGCAATCTATCAGGTATCTCTATTGAGGAGATTTCTAAGTCACTACGGTTCATTGGTCTGTCAGAAGatgttgtttctttgtttgtgcaAGAAAAAATTGATGGAAATCTGCTCCTGCAGTTAACGGAGGAGATCCTGTCAGAAGATTTTAAGCTAAGCAAACTTCAAGTGAAGAAACTCATGCAGTTTATTAACGGCTGGAGGCCCAAAATGTAAGGCTGAACAAGTAAGCCGGTTCAGAGCAAAACAAATGCAATGTGCTGCAGTGATGCAACCACAAATATTGGCCTTCAGTATTGCAATTGACAAGTTTTGTATCTCAATGCTATGCACAGTCTTGTAATGATTTTAATAGccattttgtttaatatatacatgtatataaatcTATATTGCTTTGTGTATTAACCTGTACCCATCTCCATGTAATCTCTTTGACCTTACGGTACCTGCACAACAGACTTTATTTGCTTAAACCCAAAGCCTTTGAAAAACCTGAAGATATTAGACCCAATCCAACTGTGGCCTACGTTCCTTTGGTTGTTGATCAATAAAAACGATTAACttgattttagcttttttttccccctgacAACTTAGTTTATCACATTCAGTCTATCTTGTATCAAGTTGTCATACTAGTTGacactaaattaaaatatttctaaCAGCATCACTTTTATGTCAGTATTAAAAGCTGATGTGTCCACAAGGGGGGAATGTTAACATTTGGATGCTTTATTTGATGAATGTGATTCTTGAAATCCATGCAATGAAAAATGACAACTGCTTATTTTCCCTTCATTTTGTTTAATACAGTCCTATTAAATTCTGGCTTAACATACCCATAGAAAAGTTATTTGACAATAGCTGTGGTTCTGAAAGCTTCATCGTCACACACTTACAAACTTTCAGAAAGATACAAAAAAATTTGATTTGAAATCCCCACTGAATTAGATTTTTGTAATACCCTATTGGATTCAAATCCATGGTTCCCAACCTATCCACACCCTGCCCAGTATATTAGGGTCAGTTGCCTGATCAAGCAAGCAATCTACCTGATCTTCAACAGTCAGATCTTTGTCAGCAAGTCGAGCTCGAATGTTATGTTGTTCTTCTCCTCGGGCCACAGCCAACAGTCCCTTATACTCCGGCATCTTCTCAAATCCAAGACAAAGCTCCTCACTAGAACATTGACAAATCAACATGGTTACTACTGGTACATTCTTATTTTGTTCATGAAGAAaacggttttaaaaaaattagaaaGAAAATTAACCAAAGTTAATTACTGGATGAACTTAATTAGAGATCATCAAAATAAGATGTCAATGTGCAAAAATTAGATTTCTAGAAATCCACATGAAATGTTTAAACAAAACTGAGTTCAGACTTGTGTGGCTGGATCTACCTTGTTATGACTGAAGGATTGGTTCCTTCAAGCTTCCGGCGAGCAAAGTTGACCTTCTGAAGAGGGAACCAGTTGATTTCTTTGGTGTTTACACTCTCTGTCCAGGTGCCTCCTTTCTTCAGCTGCTTCAGCTCAAAGTTCTGCATCATGGGGATAATGGTGTTGCCTTTCACAATTCAGTTACCCTGCCTCTTTGATATTGATTCAATAAAACCTAAACTTATTATAGACCCCTTATATGGGAAACTAGAAAATGGAATACGTGAAACATTTGATTACACTGAAGGCTATGTGGAAATAAGGAAAGCAAGCTATTTGTTTCCGTTTGCAAGCTTAAAATCTGCTGTGAGTTGCTCTACCTTCCAGTCCAGCGAGGGCTCCTTTACAAACACATCCATAGTGTTGAGCAGCAAGTCTGGCTCAGCTCTGAAGGCTCGCAGTGAGTGAACCATCACACTCTGGATGAGACCAGACTCGGCCAAGGGACGcatcaagtttataaactgccggGTCAGTCTAAACGGCATCAGTTCAGGCACTGGAAGAAACTACATGCAACACAGCTTATTGTCATCATCTATGATACAGCTTGACCCGATGCTTTACTCAACTTCTTTTCAAGTTTGTATAGCAACTCTTTCTCCATACTGGACAAAGACCCACCTGAGTGGCTGATCCAAAAGCATGACCAAAGTCAATGCCGATCATGCCGCCAGTCTCTGTATTGATCATGAAGTTGGAGAGATGCCTATCACCAATGCCCAGAATCCAGTGACTGATGCAGAGCACAGCATGAGAACTGCTGAAATGGGACCTCAGTGAAAGGAAGGCTTCGGGTGTGGTGCTCATCCTCACAAAAGCACGTCTGAAAGCAAGTGTTCGTGGCAGCATTAATTCTGTTTCACATTAGaatattgcatttaaacaatgaatcataataacattttaatataaaaattaaatcctGCAATGTGAAACAGAG

Function

symbol description
garem Predicted to enable proline-rich region binding activity. Predicted to be involved in several processes, including cellular response to epidermal growth factor stimulus; epidermal growth factor receptor signaling pathway; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within positive regulation of cell division. Orthologous to human GAREM1 (GRB2 associated regulator of MAPK1 subtype 1).

GO:

id name namespace
GO:0071364 cellular response to epidermal growth factor stimulus biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0070064 proline-rich region binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-767 Predicted to enable proline-rich region binding activity. Predicted to be involved in several processes, including cellular response to epidermal growth factor stimulus; epidermal growth factor receptor signaling pathway; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within positive regulation of cell division. Orthologous to human GAREM1 (GRB2 associated regulator of MAPK1 subtype 1).

Ensembl:

ensembl_id ENSDARG00000017242

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066518 True 5026 mRNA 0.46 6 41340520 41350398

Neighbor

gene id symbol gene type direction distance location
XLOC_033972 dph2 coding upstream 9554 41322407 ~ 41330966 (+)
XLOC_033971 MCUR1 coding upstream 22306 41313568 ~ 41318214 (+)
XLOC_033970 rgs9bp coding upstream 28323 41303572 ~ 41312197 (+)
XLOC_033969 si:dkey-86l18.10 coding upstream 37660 41295974 ~ 41302860 (+)
XLOC_033968 scrib coding upstream 64623 41160225 ~ 41275897 (+)
XLOC_033974 chpf2 coding downstream 71600 41421998 ~ 41433786 (+)
XLOC_033975 BX005319.1 coding downstream 109255 41459653 ~ 41460435 (+)
XLOC_033976 BX005319.2 coding downstream 232146 41582544 ~ 41582659 (+)
XLOC_033977 hrh3 coding downstream 398295 41748693 ~ 41753237 (+)
XLOC_033978 AL928906.1 coding downstream 410863 41761261 ~ 41761379 (+)
XLOC_033966 AL772146.1 non-coding upstream 227225 41112901 ~ 41113295 (+)
XLOC_033965 NA non-coding upstream 236183 40962728 ~ 41104337 (+)
XLOC_033963 CU041319.1 non-coding upstream 469772 40870631 ~ 40870748 (+)
XLOC_033960 dre-mir-153a non-coding upstream 854930 40485510 ~ 40485590 (+)
XLOC_033951 BX908792.2 non-coding upstream 1626746 39713215 ~ 39713774 (+)
XLOC_033982 CU570782.3 non-coding downstream 963376 42313774 ~ 42313888 (+)
XLOC_033983 NA non-coding downstream 1017041 42367439 ~ 42393494 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_12582462_12589223 GAREM, GAREM1 coding CI01000026 null 12582304 ~ 12589557 (+)