XLOC_033972 (dph2)


Basic Information

Item Value
gene id XLOC_033972
gene name dph2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41322407 ~ 41330966 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066515
GAAGAGCGTGTCCTGTTCCGGAACCTCACGTGGGAGTTGACATGTAATTTGCAGCTCTGTTTTGTGAGAGAAGATGACGGACGCGTTCAGCAGCAGCAGTGAGGCGGTTCTCCAGCGCTCGGTCACTTCAACACACAGTTTCCACCCTTCTGGAGACCTTCTGCTGCTCTACCAGACACCCGAGACCTGTCGTTTCATCACTAGCAATCACTTCAAGAAGGTGGCCTTACAGTTTCCAGATGAACTGCTGCCTGATGCCGTCCGGGTATCTGCTGAAATAGAGGATAAAACCAAAGCCAAGACTTACATTTTAGGGGATACATCCTATGGCAGCTGTTGTGTGGATGAAGTAGCAGCAGAACATGTGGGAGCAGACTGTATAGTGCATTATGGGTCATCTTGTCTCAGCCCATGCAGACGACTACCGCTTCTGTACGTGTTTGGGAAAAGACCCATTGATGTCCATCAGTGTGCGTCATCCTTTAAAGAGCTTTACCCGAATCTCCAAAGCCATATCATAGTACTGTTTGACGTCACTTACTCACATGCTATAGATGATCTCAGAACACTTTTGTGTGACGTCTACCCTAATGTTGTGGTGTCTCGTCTGAAAACGGATCATTCCTGTGGTGCTGAACTCATACAGGACAGCTGTGTGGACTTGCAGTCAAACGATGATGGAGTCATTTTTAAATTTGGCAGACAATTCAGAATAAAAGAAGGACAAACTGTTAATGATTACAGCATCTTTTACATTGGCCAGGAAGGCCTGACGCTTACAAACTTCATGATGAGCTGGAACAATTGTGTCTTTAGCTCATTCAACCCAGAGACAAGCACGGGTCGAGTGGAATCGGTTCAAATCAACAAAGCACTGATGAAGCGCTATTATGCCATTGAGCGGGCCAAAGATGCCAGTGTGGTGGGCATTTTGGTGGGCACCCTGGGTGTTGCCAACTATCTGATTATCATCGAACAGCTGAAAGACACTATTCAAAGAGCAGGCAAGAAGAGCTATATGTTTGCCATGGGAAAGATCAATGTTCCCAAGCTTGCGAACTTCCTGGAAATTGATATTTACGTGTTAGTTGCGTGTCCAGAAAACTCCCTGCTGGACTCAAGTGAATTCTACAGGCCTGTGGTGACTCCGTTTGAGATGGAGCTGGCTTGTAATAAGCACAGAGAGTGGACTGGAGAATATGTCACAGACTTCAGAGAGTTACTGCCTGGTGGAAGCAGTCATGTGGGCTTTCCTGAACCCAGTCAGTCTGCCACTGAGGAGGAGACCACAGACGTGTCTCTCATCACAGGAGCTCTACGAAGCTGTTCCACCAACTCATCTGAGATGATGCATAACTCAGAGACATCTTCGCTTGTCCTCAGGAATCAGACTCTCACTGTGGCCAATACTAACGCTGCGGCATCTTTTCTGGCAGGCCGCAGCTGGCAGGGACTGGAGCCAAAATTAGGGCAGACCCCGGTGGTTAAAGCTGTAAAGGGACAGAGAGGCATTGCAATCGCTTACGAAGAGGAGGGTAATGAGGACGCTTCAACACAACAAAAATTATAACACTCGTTTACTGTTGGACAGTCACAGGAATCATCAAAAGATTACTTTACATGTATTGATATAGTAATAAAACATCTATTGGGGGCATGTTTTATATTCCCTTGATAAGGCCAAGTACTTACTGCTCTAAAAACATGAATCAAGGTaaataaatatcttcttttttgtgctATATTATACCAATATGGTAGCCAAACTGTGGAGCAATTAAGcaattaaatgagaaaaatataaACGTGATCTTGTTTGTAATGAAGACAAAAGATTGAGCTTTATACTTTGAAGTCATCAAAAACATGTTATGAGGTACTGTACAGCAGCAAATCTCTAGTGTAAATGTAGTAACAATAAAGGGAAAGTTCTACCTAGAATTAGCTGTTAATTTACTGACCCTCAGGAAATGATGAGGGTCTTATTTCCTCAATAGAGCATTACTGATGATTTCAGCCATTATTAGTTTtttgatattctttaaaattcTAGACAGTCGCTATCAACAGCTGTCGTAAATGTCCTCAGGAACATTTGTCAAGGTTTAAGCTTGTTATTTGTTTCAGTTTCGTGCGTGGACTAATCATTTCTCTAAATCATAATTATCTACATTTACTTTTGTCGTTTCCTTTCTTTTGTGACTATTATAATGCTGTTAACCATTCATTTCAATTATGTAAATCACCAAAGAGTTTTagctaaaaatattatttaatattctactgaagagaaaaaaaacacacttgatggcctgagggtgagtaaataaactatttaaagggcacctataatgaaaagTAACTTTTGTAACTGTGTAGCTTGTTTGTGTCCACTGTCGTATttgagtgatataaacccaataaatctcttttttatttcctgatgttaaaataagaCCCACATCCTAGTGATTTTTAAGGCCCAACGtaacgtaggagtgtggttttccccacccacttaattgattgacaggcaccatgtttTTAGAATAACATGTAGTACACACATCCACAGaacttttttgcaaataaactggaatTAAAATATGTTACAACTCTTTGGGATTTTTTAATTATAAgatcaaaaagtttttttttgaacGGAGCATGgttgtaataaatacagtaaaattgatATCTAATTCTTATTCACCACAGCCACAGAGTGTCAGTAAACTCTCACATAcagtaagtgtgtttgtgtgtgttttatactgc
>TCONS_00066516
GACATGTAATTTGCAGCTCTGTTTTGTGAGAGAAGATGACGGACGCGTTCAGCAGCAGCAGTGAGGCGGTTCTCCAGCGCTCGGTCACTTCAACACACAGTTTCCACCCTTCTGGAGACCTTCTGCTGCTCTACCAGACACCCGAGACCTGTCGTTTCATCACTAGCAATCACTTCAAGAAGGTGGCCTTACAGTTTCCAGATGAACTGCTGCCTGATGCCGTCCGGGTATCTGCTGAAATAGAGGATAAAACCAAAGCCAAGACTTACATTTTAGGGGATACATCCTATGGCAGCTGTTGTGTGGATGAAGTAGCAGCAGAACATGTGGGAGCAGACTGTATAGTGCATTATGGGTCATCTTGTCTCAGCCCATGCAGACGACTACCGCTTCTGTACGTGTTTGGGAAAAGACCCATTGATGTCCATCAGTGTGCGTCATCCTTTAAAGAGCTTTACCCGAATCTCCAAAGCCATATCATAGTACTGTTTGACGTCACTTACTCACATGCTATAGGTAATATTCACCATTCAATCCGTCCTAATGTTTAGTGACATTCATTGTAAccgataattcaccccaaaatgagattgtcat
>TCONS_00066517
CAAGTTAAAAATTTCAACAATTAATAGCAGAGATTCtagttattaaattaattatccTTCTGTCAACAAACGTTGGTTTTAGAGTCGATTTGAACTGTTCCAGTGTAAACTCTCAGCTGATCTTACTCTTAAGAGTCCGCCTGCTGCCTGgtttacacacatatacaacaGTCAACCTGTATATTTTAATCAGTGTGATTCCGTAGTGTGAATGTCTGCGTCAGTACGTTATCAAACAATGTTTGTAATGACACATTCGAGCTACTTTTCTACTTCAACAACAGTTGAATATTAGATGATGTGCATAAATGATGTTTGCTTCAAGTGAGAGAAGATGACGGACGCGTTCAGCAGCAGCAGTGAGGCGGTTCTCCAGCGCTCGGTCACTTCAACACACAGTTTCCACCCTTCTGGAGACCTTCTGCTGCTCTACCAGACACCCGAGACCTGTCGTTTCATCACTAGCAATCACTTCAAGAAGGTGGCCTTACAGTTTCCAGATGAACTGCTGCCTGATGCCGTCCGGGTATCTGCTGAAATAGAGGATAAAACCAAAGCCAAGACTTACATTTTAGGGGATACATCCTATGGCAGCTGTTGTGTGGATGAAGTAGCAGCAGAACATGTGGGAGCAGACTGTATAGTGCATTATGGGTCATCTTGTCTCAGCCCATGCAGACGACTACCGCTTCTGTACGTGTTTGGGAAAAGACCCATTGATGTCCATCAGTGTGCGTCATCCTTTAAAGAGCTTTACCCGAATCTCCAAAGCCATATCATAGTACTGTTTGACGTCACTTACTCACATGCTATAGATGATCTCAGAACACTTTTGTGTGACGTCTACCCTAATGTTGTGGTGTCTCGTCTGAAAACGGATCATTCCTGTGGTGCTGAACTCATACAGGACAGCTGTGTGGACTTGCAGTCAAACG

Function

symbol description
dph2 Predicted to enable transferase activity. Predicted to be involved in peptidyl-diphthamide biosynthetic process from peptidyl-histidine. Is expressed in brain; immature eye; somite; and tail bud. Orthologous to human DPH2 (diphthamide biosynthesis 2).

GO:

id name namespace
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-030219-100 Predicted to enable transferase activity. Predicted to be involved in peptidyl-diphthamide biosynthetic process from peptidyl-histidine. Is expressed in brain; immature eye; somite; and tail bud. Orthologous to human DPH2 (diphthamide biosynthesis 2).

Ensembl:

ensembl_id ENSDARG00000078077

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066515 False 2778 mRNA 0.41 7 41322407 41330966
TCONS_00066516 False 597 lncRNA 0.46 4 41322445 41324633
TCONS_00066517 True 935 mRNA 0.44 4 41322502 41326294

Neighbor

gene id symbol gene type direction distance location
XLOC_033971 MCUR1 coding upstream 4193 41313568 ~ 41318214 (+)
XLOC_033970 rgs9bp coding upstream 10210 41303572 ~ 41312197 (+)
XLOC_033969 si:dkey-86l18.10 coding upstream 19547 41295974 ~ 41302860 (+)
XLOC_033968 scrib coding upstream 46510 41160225 ~ 41275897 (+)
XLOC_033967 puf60b coding upstream 164264 41146560 ~ 41158143 (+)
XLOC_033973 garem coding downstream 9554 41340520 ~ 41350398 (+)
XLOC_033974 chpf2 coding downstream 91032 41421998 ~ 41433786 (+)
XLOC_033975 BX005319.1 coding downstream 128687 41459653 ~ 41460435 (+)
XLOC_033976 BX005319.2 coding downstream 251578 41582544 ~ 41582659 (+)
XLOC_033977 hrh3 coding downstream 417727 41748693 ~ 41753237 (+)
XLOC_033966 AL772146.1 non-coding upstream 209112 41112901 ~ 41113295 (+)
XLOC_033965 NA non-coding upstream 218070 40962728 ~ 41104337 (+)
XLOC_033963 CU041319.1 non-coding upstream 451659 40870631 ~ 40870748 (+)
XLOC_033960 dre-mir-153a non-coding upstream 836817 40485510 ~ 40485590 (+)
XLOC_033951 BX908792.2 non-coding upstream 1608633 39713215 ~ 39713774 (+)
XLOC_033978 AL928906.1 non-coding downstream 430295 41761261 ~ 41761379 (+)
XLOC_033982 CU570782.3 non-coding downstream 982808 42313774 ~ 42313888 (+)
XLOC_033983 NA non-coding downstream 1036473 42367439 ~ 42393494 (+)

Expression


Co-expression Network