RNA id: TCONS_00066498


Basic Information

Item Value
RNA id TCONS_00066498
length 5600
RNA type mRNA
GC content 0.52
exon number 43
gene id XLOC_033968
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41160225 ~ 41275897 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTGAAGTGTATCCCGCTGTGGCGGTGCAACCGTCACGTCGAGTCTGTGGATAAACGACACTGCTCGCTCACTGCGGTGCCCGATGAGATCTACCGCTACAACCGCAGTCTGGAGGAGCTGCTCCTGGACGCCAACCAGCTGAGAGAGCTGCCTAAGccTTTCTTCAGACTGCACAATTTGCGAAAGCTGGGCCTCAGTGACAACGAGATTCAAAAATTACCACCAGACGTTGCCAACTTCACGCAGCTAGTGGAGCTTGACATCTCTAGAAATGATATTTCTGAGATTCCTGAAAATATAAAATTCTGCCAGTCTTTGGAGATTGCAGACTTCAGCGGAAACCCCTTGACCAGGTTGCCTGATGGCTTCACGCAGCTCCGAGGACTGGCTCACCTATCACTCAATGACGTGTCGCTGCAGTCTCTACCCAATGACATAGGAAACTTGTCAAACCTGGTGACTCTAGAGCTGAGGGAGAATCTACTGAAATCCTTGCCCTCCTCTCTTTCCTTCCTGGTAAAACTGGAACAGCTGGATCTGGGCAGCAATGTACTGGAAGTTTTGCCTGACACACTTGGGGCGCTGCCCAATCTTCGTGAGCTGTGGTTGGACAGAAACCAGCTCTCCTCACTACCTCCTGAGCTGGGGAACCTGCGGCAGCTGGTTTGCTTGGACGTGTCAGAAAACCGTCTATCAGAGCTTCCCACAGAGATCAGCGGCCTTATCGCCCTCACGGACCTGCTGCTCTCAGAAAACCTCCTGGAGATCTTGCCGGACAGCATCGGCTCACTTAAGAAGTTGTCCATTTTGAAAGTGAACCAGAACCGCCTTGTGCATCTGACTGACTCTATTGGGGAGTGTGAGAACCTGACAGAGCTCATGTTGACCGAGAACCTACTGCAGTCTCTTCCGCGCTCACTTGGGAAGCTGAAGAAGTTGACCAACTTGAATGTGGACCGAAACCGTTTGAGCAGCGTGCCTGCAGAGCTGGGCGGATGTGTTAGCCTGAATGTGCTCTCTCTCAGAGATAACCGTTTGGGAAAACTACCTCCAGAGCTCGCCAATGCCACTGAATTACATGTGCTTGATGTGGCAGGCAACAGGTTGCAGAACTTGCCTTTCGCATTGGCCAACCTGAACCTGAAAGCTATGTGGCTGGCAGAGAACCAGTCTCAACCCATGCTCAAGTTCCAGACAGAGGATGATGAACAGACTGGAGAGAAAGTTCTCACCTGCTACCTGCTGCCCCAACAACCCTCATCTAGCCTCGAGAATCTGTTGGAGAGGAGCGTTGATGAAGCGTGGCCCACAGACACTAATTTGAACAGAGTATCAGTTATTCAGTTCCGGGACGACTCCAAACATGAAGAGGAAGATGATGAGACTGCGGCAGACAAGAGGGGTCTTCAGAGGAGAGCCACACCACACCCTAGTGAGTTAAAGGTGATGAAGAATGTAATTGAAGCAAGAAGAAATGAGGCTTATACAGCCAGACCAGATGAAGATCTAGAATCCCCAGATGCTGAGGAGAAACGGTTAAGTGGTCTGTCCAATCAGAGTCATGATTCTCAGGCATCCAGTAGCACCACCTCAGCCACTTCCCATGAGGACAAGCAGGGTATAAACAGTACAGGGGTGGAGCTTAATGATGGACAGGTTCAAGAAGAGGAGGATCTGGATGAGATGGAGGTGGAGTATACTGAGCCTACTGTGCACTTTGCTGAAGAGCCCATCATCCGTGGTGGTGATGAGGACGACGATTATGATAATGACGATGATGACGCTGAAAGGAGTGACGAGGTGTCTCAAACGCCATCTTTTCCTGCCGAGAAACAGCGGCTCATACGTAAAGACACACCACACTACAAAAAGCACTTCAAGATCACCAAGCTGCCCAAACCAGAGACAGTCGCCGCCCTGCTGCAAGGCTTCAGTCATGATGGCCTGTCACCTACTGCTCACACCCCTGAGAACGAGAGGGATGGAGAGGATgacgaggaagaggaggaggatgaagacgAGGAGGACGATCTCCATACTCCTTTCCAGCACAGACTAGATGCAGCAGAGCTAGAAGACATCAGAATGAGTCAGATGAACTCGTCCCTGCAGCCAGTGAAGGGGGTGTCATTTGATCAAGTCAATAATCTGCTGATTGAACCTGCTCGAATTGAGGAGGAAGAGCTGACCTTGAGCATCCTGAGGCAGACTGGTGGATTAGGCATCAGCATAGCAGGAGGGAAGGGATCTACTCCCTATAAAGGTGACGATGAGGGTATTTTCATCTCTAGGGTGTCAGAAGAAGGCCCTGCGGCTCGTGCTGGTGTCAAAGTTGGAGACAAACTTCTTGAGGTGAATGGAGTAGACCTGCACGGAGCGGAGCATCATACAGCTGTTGAAGCTTTGCGCAATTCAGGAGCAGCCGTGGTCATGACTGTTTTGCGGGAGCGCATGGTGGAACCAGAAAACGCCATCACCACCACACCGTTGCGGCCAGAAGATGATTATTTCCCCCGGGAGAGACGCTCCAGTGGGCTTCCTTTCCTCCTGGATCCTGATTGTCCCGCTGTTAGCACTGGACCCGCACAGCGACTAGCCACTTGTCTGATCCGCAATGATAAAGGCTTAGGCTTCAGCATTGCTGGTGGGAAAGGGTCAACGCTGTACAGAGTCGGAGACACGGGCATCTTCATCTCTCGTATTGCTGAAGGAGGAGCAGCTCACAGAGACAACATCCTGCAAGTGGGAGACAGGGTCATATCAATCAATGGTGTAGACATGACAGAGGCCAGGCATGACCAGGCAGTAGCGCTGCTTACCGGCACCTCCCCCACCATCACCCTGGTGGTGGATCGGGAACAAAGCAGTGTAGGCGGAGCCTCCCCTCGAACCCGACCACATTCGCCCCCACCTCCAGAGCCCTCTGACTCCCCTGAGCAAGAGGACGGTGGAGACGAGCACCTTGGAAACCATCTCAACTGCCCCATGGAAGATGAGTACCCTATTGAGGAAGTGACGCTGATCAAagcaggtggacccctgggtttgAGCATTGTAGGGGGCAGCGACCATGCCAGCCATCCATTTGGAATTAATGAACCTGGAGTGTTCATCTCAAAGGTCATCCCCAATGGCCTGGCCTCCCAGAGTGGACTTCGCGTGGGTGATCGTATCTTGGAGGTGAACAGCATTGATCTGCGTCATGCCACACACCAGGAGGCTGTTAGAGCCTTGCTTTCCAACAAACAGGAGATCCGTATGCTTGTGCGCAGAGATCCTTCTCCCCCTGGCATGCAGGAAATTGTCATTCACAAGCAACCTGGAGAAAAGCTGGGAATAAGCATTAGGGGCGGAGCTAAAGGTCATGCAGGAAACCCCTTTGACCCCACAGATGAGGGCATCTTTATTTCCAAGGTGAGCTCCAACGGTGCTGCTGCACGAGATGGCCGACTGCGGGTGGGTATGCGTATTCTTGAGGTGGGCAACAACAGTCTGCTGGGTATGACACATACAGAAGCAGTGAGGGTCTTGCGTGCTTCTGGAGATTCCCTGGTCATGCTTATTTGTGATGGCTTTGACCCAAAAAGTGCTTCAACCATAGAGGCATCTCCTGGTGTTATTGCGAATCCGTTTGCGGCAGGTATTGTTCGTAAAAACAGTATGGAAAGCATCTCATCAGTCGACAGAGACCTGAGTCCAGAAGAGATTGACATCATGCAGAAGGAGGTAGAAATGGTAAGAGAGACGTCCCAGTGGGAACGAGAGGAGATGGAAAAAGTGGAGCGCATGCGCTTGGAGCGCGAGGAGGCAACTCGCTTGCTGGAGGAGGAAACTGAGAGTTTGAGCTCTGGACCACTGAAACTGGACTATAAGACACTGGCGGCTCTGCCTACAACTAGTCTACAGAAAGTTAATAGAGCTTCACCATCTGAGCCTTTCAGGATTGACAGTCCTGTCCGAGATGCTGCACACTCTCCACACAACTCACAGTCAAACATTCATTTCCCTTCAAATGCAAACACCAAGGATAATGCATCAACTAAACCTGGTGCCATCCAGCCTCTCTCTCGGGTGCGACCCCCTGTGTCTCCAGCCAGTCAGGATGGCCACAGTAGTCCAAACCCCTTCCAGCATGGCCTCTCTCCCATCAACTCTCAGACCACTCCTCGTGCCCCATCCCCTGACACACATGAGGAATACCCTATCAATATTAAGCAGGTTTATAAGGCCTTCGCTGCTGTGCCACACTCCCTGGCCGTACTGGAACCCCCTCAGGATCTTTATTCTCCACGGAACAATGTCAGTGCAAAACAGCCATCACCTGAGACCCCTTCGCCTCTGGGTAGGCACAGTCCAGAACAGCGCTCCTTCAAAGACAGACAAAAGTATTTCGAGATCGATGTGAAGCAACAGACTCCAGACAAACCCAAACCTCGCATCTCACTGGTGGGAGAAGATGACCTGAAGAAAATGAAGGAGGAAGaagCAAAGCGAATTGAACAGAGGGCGCGAGAGTTCATGTTGGATGaagatgaggaggaggaagaagaggatcTTGCCAAGCAAGTGGCACATATGAAGGCTCACGGAAAGGTTGTTCTTGATGGTGTGGAGTACAAGGTAGAGAGCTTGGGTTCCCCGACTTCACGGCAGTGTGCCACACCACCAAACTATAGTGCCACACCACCCAGCCACTGCGGAAGCTCAGGTCCTTCCTCTATCGACGGTAAAGGAGACTCCCAGCGTAATTCAGTGGAAGACAGTTTCAGACTGGAGCAGAGACCCAATTCTATGACCGGattgatcCCAGTTTATCCCGGTGAATCTGCGGCTCCCATCCGGACGGCCAAAGCCGAGCGCAGGCATCAAGATCGATTACGCATGCAGAGCCCAGAGCTCACTGTCGCTTTGGACAAGGAGCTGTCGCCTGCTGAAAAACGAGCCCTGGAGGCAGAGAAGAGAGCCATGTGGAGAGCAGCCAGGATGAAGTCTTTAGAGCAGGACGCTTTGAAGGCTCAGATGGTCATTGCCAAGTCTAAAGAGGGCAAGAAGCGAGGAACCCTGGATCAGCTGTCAGAGTCCCCATCCCCTGCACCCACACCCTCTCCAACACCAATGGAAGATATCAGTCCACGGACAGTGACATCACCAGGCAGACTGTCCCTGTCAGAAAAGAAGTTTGACTACCGACAATTTGCTGCCATTCCTTCTTCCAAACCCGTTTACGACATTCAGTCTCCAGGTGCAGCTGATGACGTGCACTTCATGGATGAGTCCTCCAGTAACGCAGTGTCTGTTATTGATCCAGAAGTTCCAGTGGCCGCCACGTCAGCTCTAGAAGAGATGGCTCTCTACAGTAACAAACGTAAACTACGCCAGGGCCGCCGCAGCCTGGAGGCTCCTGTGCCCACATAACCACACACTAACACATCTGAACTGTGAACGTAAACACATAGTGATCATCTAATGCGCTGAAATACACAGATATTAAACCACTCTTTTATCAGTGCTGACCACACAAGCTGACGGCCATCCCTCTTTTCAGATTCTAATATGAACGGTCCAGAGGATGGCTGATTGAGTTTTTACCcggtttg

Function

GO:

id name namespace
GO:0001736 establishment of planar polarity biological_process
GO:0030154 cell differentiation biological_process
GO:0001764 neuron migration biological_process
GO:0050918 positive chemotaxis biological_process
GO:0016477 cell migration biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0097120 receptor localization to synapse biological_process
GO:0098887 neurotransmitter receptor transport, endosome to postsynaptic membrane biological_process
GO:0007275 multicellular organism development biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0045197 establishment or maintenance of epithelial cell apical/basal polarity biological_process
GO:0035089 establishment of apical/basal cell polarity biological_process
GO:0001841 neural tube formation biological_process
GO:0043113 receptor clustering biological_process
GO:0071679 commissural neuron axon guidance biological_process
GO:0008283 cell population proliferation biological_process
GO:0098968 neurotransmitter receptor transport postsynaptic membrane to endosome biological_process
GO:0097475 motor neuron migration biological_process
GO:0033564 anterior/posterior axon guidance biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0060561 apoptotic process involved in morphogenesis biological_process
GO:0001944 vasculature development biological_process
GO:0009790 embryo development biological_process
GO:0097060 synaptic membrane cellular_component
GO:0031252 cell leading edge cellular_component
GO:0042995 cell projection cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0005912 adherens junction cellular_component
GO:0030027 lamellipodium cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko04390 Hippo signaling pathway
ko04391 Hippo signaling pathway - fly
ko04530 Tight junction
ko05203 Viral carcinogenesis
ko05165 Human papillomavirus infection

ZFIN:

id description
ZDB-GENE-030616-572 Enables protein heterodimerization activity. Acts upstream of or within several processes, including establishment of mitotic spindle orientation; morphogenesis of an epithelium; and nervous system development. Located in membrane. Is expressed in brain; neural tube; and secondary posterior lateral line primordium. Orthologous to human SCRIB (scribble planar cell polarity protein).

Ensembl:

ensembl_id ENSDART00000164200

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066491 lncRNA upstream 9652 41146621 ~ 41150573 (+) False XLOC_033967
TCONS_00068919 lncRNA upstream 55888 40962798 ~ 41104337 (+) False XLOC_033965
TCONS_00068921 lncRNA downstream 22402 41295976 ~ 41302860 (+) False XLOC_033969
TCONS_00068922 lncRNA downstream 22528 41296102 ~ 41302860 (+) False XLOC_033969
TCONS_00066510 lncRNA downstream 23273 41296847 ~ 41302860 (+) False XLOC_033969
TCONS_00068923 lncRNA downstream 23381 41296955 ~ 41302860 (+) False XLOC_033969
TCONS_00066516 lncRNA downstream 48871 41322445 ~ 41324633 (+) False XLOC_033972
TCONS_00066489 mRNA upstream 2082 41146560 ~ 41158143 (+) False XLOC_033967
TCONS_00066493 mRNA upstream 2083 41146629 ~ 41158142 (+) False XLOC_033967
TCONS_00066495 mRNA upstream 2084 41146681 ~ 41158141 (+) False XLOC_033967
TCONS_00066496 mRNA upstream 2499 41147732 ~ 41157726 (+) True XLOC_033967
TCONS_00066494 mRNA upstream 4926 41146649 ~ 41155299 (+) False XLOC_033967
TCONS_00066508 mRNA downstream 22400 41295974 ~ 41302753 (+) False XLOC_033969
TCONS_00066509 mRNA downstream 22545 41296119 ~ 41302605 (+) False XLOC_033969
TCONS_00066512 mRNA downstream 29998 41303572 ~ 41312197 (+) True XLOC_033970
TCONS_00066513 mRNA downstream 39994 41313568 ~ 41318214 (+) False XLOC_033971
TCONS_00066514 mRNA downstream 41288 41314862 ~ 41318200 (+) True XLOC_033971
TCONS_00066488 other upstream 46930 41112901 ~ 41113295 (+) True XLOC_033966
TCONS_00066484 other upstream 289477 40870631 ~ 40870748 (+) True XLOC_033963
TCONS_00066481 other upstream 674635 40485510 ~ 40485590 (+) True XLOC_033960
TCONS_00066479 other upstream 676274 40470655 ~ 40483951 (+) False XLOC_033959
TCONS_00066478 other upstream 699893 40454712 ~ 40460332 (+) False XLOC_033959
TCONS_00066511 other downstream 27747 41301321 ~ 41302612 (+) True XLOC_033969
TCONS_00066520 other downstream 186079 41459653 ~ 41460435 (+) True XLOC_033975
TCONS_00066521 other downstream 308970 41582544 ~ 41582659 (+) True XLOC_033976
TCONS_00066524 other downstream 487687 41761261 ~ 41761379 (+) True XLOC_033978
TCONS_00066534 other downstream 1040200 42313774 ~ 42313888 (+) True XLOC_033982

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_12486292_12534245.mRNA True 7136 mRNA 0.52 49 CI01000026 12485886 ~ 12534327 (+)