RNA id: TCONS_00068919


Basic Information

Item Value
RNA id TCONS_00068919
length 531
lncRNA type read_through
GC content 0.45
exon number 5
gene id XLOC_033965
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 40962728 ~ 41104337 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAGACAGTGCACGACACGTAAGTGGCCAGAGTGTCTGGAGTCTGTCTGAAACTGATAAAAATGGTGATGGAGTTTATCCAGAGTCTCGCTCATAGTCAGTAGCAAAACAAAGGGAGACAGAGCGGAATTTTGCAGGCGTCCAACACTGTAGCCATTTTCGTAGCGTGAAAATGAGATTCTATTGTAGCGCATCTCAAAGTTTCAGTCCATGTTTTtcaccagacagacagacagttcatTAATTCACAGGCAGGATTATCATTCTGGTACCTGCCGATGACCTTTCGGAGTTGTCACCAAATCATCTACCCTTAAAAGTGATGCGAGTGTTGTGCTGCCGTGCTGATGGATAGTGAAGAAGAAGAACTGTGATGGTGCTTCTGCAGAGGCTTCAGCTGATAGTCATCTTGTCCTTGAGGAAGCACAGCACCCAGTAAATATGGACCATATAGAGATCAATACTGAGGCTTGTTCAATAGCTGTGGTGATATTGAAGCCAGAGGAATAAATGAGTCTTCTCTTCAACAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066480 lncRNA upstream 484553 40473508 ~ 40478245 (+) True XLOC_033959
TCONS_00066474 lncRNA upstream 774422 40183299 ~ 40188376 (+) True XLOC_033957
TCONS_00066455 lncRNA upstream 1287437 39674244 ~ 39675361 (+) True XLOC_033948
TCONS_00066454 lncRNA upstream 1292558 39664225 ~ 39670240 (+) False XLOC_033948
TCONS_00066449 lncRNA upstream 1507995 39454316 ~ 39454803 (+) True XLOC_033946
TCONS_00066491 lncRNA downstream 42284 41146621 ~ 41150573 (+) False XLOC_033967
TCONS_00066501 lncRNA downstream 136985 41241322 ~ 41245090 (+) False XLOC_033968
TCONS_00068920 lncRNA downstream 147813 41252150 ~ 41255247 (+) False XLOC_033968
TCONS_00066506 lncRNA downstream 152170 41256507 ~ 41257714 (+) False XLOC_033968
TCONS_00068921 lncRNA downstream 191639 41295976 ~ 41302860 (+) False XLOC_033969
TCONS_00066485 mRNA upstream 69503 40884012 ~ 40893295 (+) True XLOC_033964
TCONS_00066483 mRNA upstream 254658 40658003 ~ 40708140 (+) True XLOC_033962
TCONS_00066482 mRNA upstream 321792 40638210 ~ 40641006 (+) True XLOC_033961
TCONS_00066477 mRNA upstream 463412 40228422 ~ 40499386 (+) False XLOC_033959
TCONS_00066476 mRNA upstream 735196 40205410 ~ 40227602 (+) True XLOC_033958
TCONS_00066489 mRNA downstream 42223 41146560 ~ 41158143 (+) False XLOC_033967
TCONS_00066490 mRNA downstream 42273 41146610 ~ 41155239 (+) False XLOC_033967
TCONS_00066492 mRNA downstream 42291 41146628 ~ 41152593 (+) False XLOC_033967
TCONS_00066493 mRNA downstream 42292 41146629 ~ 41158142 (+) False XLOC_033967
TCONS_00066494 mRNA downstream 42312 41146649 ~ 41155299 (+) False XLOC_033967
TCONS_00066484 other upstream 92050 40870631 ~ 40870748 (+) True XLOC_033963
TCONS_00066481 other upstream 477208 40485510 ~ 40485590 (+) True XLOC_033960
TCONS_00066479 other upstream 478847 40470655 ~ 40483951 (+) False XLOC_033959
TCONS_00066478 other upstream 502466 40454712 ~ 40460332 (+) False XLOC_033959
TCONS_00066463 other upstream 1249024 39713489 ~ 39713774 (+) True XLOC_033951
TCONS_00066488 other downstream 8564 41112901 ~ 41113295 (+) True XLOC_033966
TCONS_00066502 other downstream 143833 41248170 ~ 41254395 (+) False XLOC_033968
TCONS_00066503 other downstream 148356 41252693 ~ 41254437 (+) False XLOC_033968
TCONS_00066504 other downstream 148360 41252697 ~ 41254029 (+) False XLOC_033968
TCONS_00066505 other downstream 150284 41254621 ~ 41255247 (+) False XLOC_033968

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU152594 True 1398 lncRNA 0.40 4 CI01000026 12263695 ~ 12303098 (+)
rainbow trout (Oncorhynchus mykiss) TU152594 True 411 lncRNA 0.43 1 NC_048566.1 31981875 ~ 31982285 (+)