G1474650


Basic Information

Item Value
gene id G1474650
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63543506 ~ 63545595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1686481
AGCTGGTGTATTAGAAACTTCAGTACCTCCACCAAAGAGTGAAAACTAGATATTAAGGACATACCGTCGACTGCATCCTGTACATACACCATAGAAATGAATTAACAGATCACCATCAATTTCAGAGGAGGAATGCAGGCAGAAATGCACTGTATAATGTGCTGCTATTGATGTAGAAGCTGAACAAAGAATAGTTCAGTCAGAATTATAAATGGTACAgatgaagctacaaaatgagtcCCTGACAGACACAAAACATTTTTGACGATCTCATATTATGATTCCCTGTTTAAATTACTACCAAGCACATAAAAGGCACAATTTCACAAATGGATTGACATAACAAATCACTTTAAATAATTATTCAACACAAGAAAAATTGTAGTATGTAGGCACAAACTTGAATGGTCACAAATAAGGAATGCACAAATAGAGTTGTATGGGCACAAATAGGATTGTACTACAGACAATGTGATGATTAAGGCACAAACTATGGTCGTGGCAGACCAATAGAACTGGAGCTGAATGTACAGTACAAACAAAAAGCAACATGAATTGATCCCTTTAAGCACAAATAAAACTCCCCACTTCACCTTCTCTTGTCTTCTCGCTATTGGACCAAATCAGATCAAAGTCGGATTGTAAGGCAGTCTCTATTTATTTATACTCATAAAACAGAATGGcagtgcttcctgctttaataaTGTCTGAATTTAAACCAAGATACATTTTCCATTGGACTATTTCAACTAATCAAGCCAGATAGAGAACTCATACAATCACACAGTATTATTATAATCTGCCAAGACCTTTTTCCGTAACCATTTACTTACCTTCATTACACACTCAGCAAAGATTTTAAACATGCTGTTGACATAACTCAAAAGTACAGGCTAAATAAGGAAGCACATTTTCCCCACAACATAGCCCAATTTCATAAAACTATACTTGACTTGTCACTCTTCTTAATTGATTTACAAAATGATTCCATTTTAGCTAACTTTATTTTTTACAGAGGattcctttatttatttttttagcacAATGTTCAAAGCCATGGTGTTGATGATTAAATTGACtatatttattttactatatAATATTctgtgtatgttggtgtacatTTCATTGTATATTTGAATATTTCTCAATTTTGTAGCTGGTATACCTTATCTGTGATTATGGGAGTGTAAAATGAGTGGGATGATGGTTTGGGGGGGGTACAGTACGTTTACCTTGTGGGATCCCAATGTAGACTTTATGATGGTATATTGTCGAACTCTGGCGAGCTCTGGTTCTCATGTGTTCCTCTCTCAGCTGCTTATAAAGAGGCGTAGCCCTCCAGATAAGAACAGTAGGTTACTGCACTATCCCACCAGTCTTTGGTTTAAGTTCTAGTCAAGCTTTGTTTTAGTCATTGGCCTGGAGCCAGTCGCTCTTGTAATTGTACCATGTCGAAATCGCTCACATTAAAAGTCTGTAAATATTAGTGTCTGTAGGATTCTACAACCAATAACAATCTAATTAATTATAAAGATAGAACAAAACTTGtgaaatatttaaatgtcttaTCACTGCAGAACTGTTTTAACAGCTCATGTGAAATAAAATACTATTGAATGTGAATATGAAAGCACTTTTTCACTTCATCTAAAATaagtattgttttgtttttgttttgtctgcGTATTGGTACGCTCAATGTTTGCCCTAGCTTGGGTACAGTCTGTGTTAAAGCAATAtcttattatatatattataatgcTGGAGCTACGGGATGGGAGGCTAAAACCTCTATAGGGAAAATAAATAGTGGTCAGAAACTGCCCCTTTGTAGCTAAAGTGTTATAGTGAATCTCAACATAATATATGAGTGTGTGGATTTGTGGATTTGTGTGTCTGAATCTGTGTTAATGTAGTTTTCTTCTGATAATAAGTGGGTGCAGGGCCTTACCAAGCACTCTCTCTTCAGCCATGATGATTGTACAGTATTGAAGCTACATGTGTAATAATGATCTGTGGTTATAACTGCACATATCAATAAAGAATAAACAACCTGGAA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1686481 True 2062 lncRNA 0.35 2 63543506 63545595

Neighbor

gene id symbol gene type direction distance location
LOC110494349 LOC106565665 coding upstream 25 63516736 ~ 63543481 (+)
LOC110494347 LOC106565667 coding upstream 72257 63466101 ~ 63471249 (+)
LOC110494344 LOC106583073 coding upstream 170952 63356672 ~ 63372554 (+)
LOC110494341 LOC106565672 coding upstream 277993 63249564 ~ 63265513 (+)
LOC110494340 LOC106565674 coding upstream 304755 63232397 ~ 63238751 (+)
LOC118940486 NA coding downstream 28965 63574560 ~ 63580589 (+)
srsf3b LOC106565658 coding downstream 112778 63658373 ~ 63663255 (+)
cdkn1a LOC106565657 coding downstream 120253 63665848 ~ 63671434 (+)
tmcc2 LOC106565656 coding downstream 138448 63684043 ~ 63691033 (+)
bysl bysl coding downstream 156483 63702078 ~ 63705600 (+)
G1474648 NA non-coding upstream 29090 63514147 ~ 63514416 (+)
G1474645 NA non-coding upstream 36670 63506409 ~ 63506836 (+)
G1474632 LOC106565663 non-coding upstream 53906 63484375 ~ 63489600 (+)
G1474628 NA non-coding upstream 63987 63479319 ~ 63479519 (+)
G1474626 NA non-coding upstream 64603 63478599 ~ 63478903 (+)
G1474725 NA non-coding downstream 99416 63645011 ~ 63645409 (+)
G1474803 NA non-coding downstream 105439 63651034 ~ 63651292 (+)
G1474814 NA non-coding downstream 121880 63667475 ~ 63667700 (+)
G1474813 NA non-coding downstream 127305 63672900 ~ 63673428 (+)
G1474159 NA other upstream 325912 63216948 ~ 63217594 (+)
G1473177 NA other upstream 832370 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 844691 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 1986468 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 2544443 60972478 ~ 60999063 (+)
G1475820 NA other downstream 1017779 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 1062659 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 1209726 64755321 ~ 64780475 (+)

Expression


Co-expression Network