RNA id: TU1686481


Basic Information

Item Value
RNA id TU1686481
length 2062
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G1474650
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63543506 ~ 63545595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTGGTGTATTAGAAACTTCAGTACCTCCACCAAAGAGTGAAAACTAGATATTAAGGACATACCGTCGACTGCATCCTGTACATACACCATAGAAATGAATTAACAGATCACCATCAATTTCAGAGGAGGAATGCAGGCAGAAATGCACTGTATAATGTGCTGCTATTGATGTAGAAGCTGAACAAAGAATAGTTCAGTCAGAATTATAAATGGTACAgatgaagctacaaaatgagtcCCTGACAGACACAAAACATTTTTGACGATCTCATATTATGATTCCCTGTTTAAATTACTACCAAGCACATAAAAGGCACAATTTCACAAATGGATTGACATAACAAATCACTTTAAATAATTATTCAACACAAGAAAAATTGTAGTATGTAGGCACAAACTTGAATGGTCACAAATAAGGAATGCACAAATAGAGTTGTATGGGCACAAATAGGATTGTACTACAGACAATGTGATGATTAAGGCACAAACTATGGTCGTGGCAGACCAATAGAACTGGAGCTGAATGTACAGTACAAACAAAAAGCAACATGAATTGATCCCTTTAAGCACAAATAAAACTCCCCACTTCACCTTCTCTTGTCTTCTCGCTATTGGACCAAATCAGATCAAAGTCGGATTGTAAGGCAGTCTCTATTTATTTATACTCATAAAACAGAATGGcagtgcttcctgctttaataaTGTCTGAATTTAAACCAAGATACATTTTCCATTGGACTATTTCAACTAATCAAGCCAGATAGAGAACTCATACAATCACACAGTATTATTATAATCTGCCAAGACCTTTTTCCGTAACCATTTACTTACCTTCATTACACACTCAGCAAAGATTTTAAACATGCTGTTGACATAACTCAAAAGTACAGGCTAAATAAGGAAGCACATTTTCCCCACAACATAGCCCAATTTCATAAAACTATACTTGACTTGTCACTCTTCTTAATTGATTTACAAAATGATTCCATTTTAGCTAACTTTATTTTTTACAGAGGattcctttatttatttttttagcacAATGTTCAAAGCCATGGTGTTGATGATTAAATTGACtatatttattttactatatAATATTctgtgtatgttggtgtacatTTCATTGTATATTTGAATATTTCTCAATTTTGTAGCTGGTATACCTTATCTGTGATTATGGGAGTGTAAAATGAGTGGGATGATGGTTTGGGGGGGGTACAGTACGTTTACCTTGTGGGATCCCAATGTAGACTTTATGATGGTATATTGTCGAACTCTGGCGAGCTCTGGTTCTCATGTGTTCCTCTCTCAGCTGCTTATAAAGAGGCGTAGCCCTCCAGATAAGAACAGTAGGTTACTGCACTATCCCACCAGTCTTTGGTTTAAGTTCTAGTCAAGCTTTGTTTTAGTCATTGGCCTGGAGCCAGTCGCTCTTGTAATTGTACCATGTCGAAATCGCTCACATTAAAAGTCTGTAAATATTAGTGTCTGTAGGATTCTACAACCAATAACAATCTAATTAATTATAAAGATAGAACAAAACTTGtgaaatatttaaatgtcttaTCACTGCAGAACTGTTTTAACAGCTCATGTGAAATAAAATACTATTGAATGTGAATATGAAAGCACTTTTTCACTTCATCTAAAATaagtattgttttgtttttgttttgtctgcGTATTGGTACGCTCAATGTTTGCCCTAGCTTGGGTACAGTCTGTGTTAAAGCAATAtcttattatatatattataatgcTGGAGCTACGGGATGGGAGGCTAAAACCTCTATAGGGAAAATAAATAGTGGTCAGAAACTGCCCCTTTGTAGCTAAAGTGTTATAGTGAATCTCAACATAATATATGAGTGTGTGGATTTGTGGATTTGTGTGTCTGAATCTGTGTTAATGTAGTTTTCTTCTGATAATAAGTGGGTGCAGGGCCTTACCAAGCACTCTCTCTTCAGCCATGATGATTGTACAGTATTGAAGCTACATGTGTAATAATGATCTGTGGTTATAACTGCACATATCAATAAAGAATAAACAACCTGGAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1686478 lncRNA upstream 29090 63514147 ~ 63514416 (+) True G1474648
TU1686475 lncRNA upstream 36670 63506409 ~ 63506836 (+) True G1474645
TU1686460 lncRNA upstream 53906 63484375 ~ 63489600 (+) False G1474632
TU1686455 lncRNA upstream 53906 63484467 ~ 63489600 (+) False G1474632
TU1686456 lncRNA upstream 56021 63484467 ~ 63487485 (+) True G1474632
TU1686558 lncRNA downstream 99416 63645011 ~ 63645409 (+) True G1474725
TU1686647 lncRNA downstream 105439 63651034 ~ 63651292 (+) True G1474803
TU1686661 lncRNA downstream 121880 63667475 ~ 63667700 (+) True G1474814
TU1686663 lncRNA downstream 122840 63668435 ~ 63668705 (+) False cdkn1a
TU1686658 lncRNA downstream 124207 63669802 ~ 63670827 (+) True cdkn1a
XM_036950422.1 mRNA upstream 25 63516736 ~ 63543481 (+) True LOC110494349
XM_021569319.2 mRNA upstream 72257 63466101 ~ 63471249 (+) True LOC110494347
XM_021569315.2 mRNA upstream 170952 63356672 ~ 63372554 (+) False LOC110494344
XM_021569314.2 mRNA upstream 170952 63356674 ~ 63372554 (+) True LOC110494344
XM_021569311.2 mRNA upstream 277993 63249564 ~ 63265513 (+) True LOC110494341
XR_005037047.1 mRNA downstream 28965 63574560 ~ 63580589 (+) True LOC118940486
XM_021569327.2 mRNA downstream 112778 63658373 ~ 63663255 (+) False srsf3b
XM_021569330.2 mRNA downstream 120253 63665848 ~ 63671434 (+) False cdkn1a
XM_021569331.2 mRNA downstream 121165 63666760 ~ 63671434 (+) False cdkn1a
XM_021569332.2 mRNA downstream 122926 63668521 ~ 63671434 (+) False cdkn1a
TU1685904 other upstream 325912 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 832370 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 844691 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1986468 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 2544443 60972478 ~ 60999063 (+) True G1471723
TU1686655 other downstream 112849 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 138495 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1017779 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1062659 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 1209726 64755321 ~ 64774706 (+) False LOC110494389

Expression Profile