RNA id: TU1686655


Basic Information

Item Value
RNA id TU1686655
length 2953
RNA type TUCP
GC content 0.45
exon number 6
gene id srsf3b
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63658373 ~ 63663255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTATTGTAGCTTGCAGATACAGACAGGCGGTTCGACGAAGGACAGGAAACGAATCGACTATCAGTGTTTGTTTTAAAATACGTTACGTTTCTCATTGACGTTTGTGGAGTATCAATTTTTGTTTTGAAAATTGAGGCCTGTTGAAATGGGAGatccaGCCATGCACCGAGATTGCCCTCTCGACTGCAAGGTCTACGTGGGAAACCTGGGGAACAATGGCAATAAGACAGAGCTGGAGCGGTCATTCGGCTATTATGGACCACTTCGCAGTGTCTGGGTAGCTAGGAACCCCCCAGGCTTTGCTTTTGTGGAATTTGAAGATCCAAGGGATGCAACCGACGCAGTGAGAGAACTTGATGGAAGGACATTAAGTGGTTCCCGTGTGCGAGTGGAGCTGTCCAATGGGGAGAAACGCACCCGCAACCGGGGTCCTCCTCCATCGTGGAGCCGACGTCCTCGAGATGACCATCGTGGGCGTCGTGGTAGCCCGCCCGCCAGGCGCAGGTAACTCATCTCCCATACAGGGCTTTATGATAGCAATGCCCAACAGACTACTAATCCCTTTCTGTCCCTTTTACTAGTTAATCTACTTGTTTTGTTCCCGTGTCCTCTTTCCAAACTGCATCTCCTGTTTCGCTGCACCGTAGTGATAGTTTAGTGTTTGATAACCCCTTTTCCATGGTAGTCTACAGTGGTTAGTGTAATGTGGTGCTGAAGGCATGCAGTTTTCATCTTCATTATCATTGTTTAATGACTTCCGGGGTACTTTAGATCCAGGGGGTGGGTACAGTGTGAAATTAAGTGTGCTGATTTGTATGCCAAGTTTAAGTGATAAGTACATTTGCGTTTTCTCTACCACATTTTCTCTAAATTTGGCTTGCAAGCTTTTCACTGTTACCTGAAGCACTGAACGTGTTTTGGAAGTAGGTGATTCATATTTCAGACCAGTACCTCACTATGAACCGGGTGGGAGGGAAGCTTAATGATGCTAGGTTGGTTGTTTTTGTTACAATTTGAGGTTGCTTTTTTTATTGACCATTTATATTAATAAAAATGAACCCCGTTACAGAGTCATCACCATGCCTCTTCTCACCACCCTCTGAGTCAGTCAACTAGTCCTCTTTCAGCATCATGTGACCATTGACCAGCGTGCCCCAATCAGCTTGGCTGATGTCGTGTCACATGGCCAGTCGTCAGGTTGCACCAGCCCATTGGTTCCTGCGCATGCAGTTCTcagcctcttcctcctccaacTTTAACCCAATCGGCAGCGGCCCTCCTCACATTCCCGACCAATCAGCGTTTTACGTCCCCAAATGTCTACACTGCAACCTACCAGCAGCAGCCCTCGGCTAACCAATAAAAGCAGGAAAAATCCACAGCCAGCCCCCATCCACCAGCCAACTAATCACCTCGCAGCATCTGGCCAGTCCTTTTCAGCCAAATCTGCCTACCCGGCCTACAGTCTACCTCCCCTTCGTCATTTCTAGCTTGTTGAAAACCAAACGACTAGTAAGTTTTACCTGCTTCATACAGTACACTGCTGATTACAAATTTAAAAGTGAAGAGAAAGCTGCTTTAAAAAAGGTTATCCTTTTTTATTTGAATCAAACAGGATTGATATTTCTCCCTCATTACTGTAATCCGTTGATTTAAAGGGGAATGGACATTTTTGAGAAACATTAATTATTAATCTGTGAAGGTCTTTCTAATTGTTCAAAGGAGCTTTTCTGATCAGTGCTTTCCCTGGTTTAGGTCGCAGTGGTCCCATCTTGTGTGTGCTTTGCACTTGTGCTCAATATGTAGCCTTGAATTTACTGCAGCATTGAGAGCATTCTTACCCAATTTTTGACCATTAATTATGTTACAACCCTCCATTTTCTTACCCCTTCCCATTTGGTATAATTGCACTTCTCTTTCCGAAGCATTTTTTTGTCATTCACTCAGCTGGCAGTATTAACTAACCATGGCCTTTTATGGGAGGCGATGACTGAATTTCAGATTACAAATGCCTTATCTGCAGTCACCCATTCCCatccctttggggggggggggggggtgtaatagaCATTAACTTGGTTCCCCCAGAGGGGCAGTTTTTGGTGGGGACTGGGACTGTAGGGTTTACTTCAGGGTAATTTGGGGGTTGGATGGGTTTGGAATCAATGGGCCACCAATGTATCATGCTCTGCTTTTAACATCCTCTTATTCCCCCCTCCCCAGATCCCCACGTAGGAGGAGCTTCAGCCGCAGCCGAAGCAGGTCTCTCtccagagacaggaagagggagagatcTTTGTCCCGGGACAGGAACCACAAACCCTCAAGATCATTTTCCCGATCAAGGAGCCGCTCCAGGTCTACGGAGAGAAAGTAAGGAAATGCATGGCAGTCGAGTTTGACGGCAAAGAAGATGAAtgaactttcttttttttttacggaTATTTTAGCGGTTTCATTTTTGCTTCTCTGTGACATGTAAGGTATCCAATTCCTCTGTATTTTGTAAATAAGTTGGTATGCAGGTGTAACGCATGACTAAAATGGTTGTTAGTCCTGTTAATGCCAAGACATACCGTAGTTGTCCCCAAGCAGTATTCCATTTCATCAATCATTATAAGCGTTCTCTATTTGTCCATGAGTACCAGCTCACAGAAACACACCATTCTAAATAGTCTAGTGCTCAAGTCATGTTCCATGTCTGCAAGATTAGTGTGTCTGGATGTGGTGGAAGGCTATGGTCAGCTATCCTATTGTCGGTTAATATACCGATATGTTTTCTATCGACCTCTAGGACTTCCACTATTCTTCCAGTTCCTGTTGGTAAAGGTTTGTCTTTGCAAATAACGGCACCCTTATTTTGTCTACAATAGCCCACTGTTTTTCTTTTCCTTGATATTTGTACTACTTATGTTCTCTGAATTAAACTAGTTGTAAAAAGGCTTCTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1686647 lncRNA upstream 7152 63651034 ~ 63651292 (+) True G1474803
TU1686558 lncRNA upstream 13035 63645011 ~ 63645409 (+) True G1474725
TU1686481 lncRNA upstream 112849 63543506 ~ 63545595 (+) True G1474650
TU1686478 lncRNA upstream 144028 63514147 ~ 63514416 (+) True G1474648
TU1686475 lncRNA upstream 151608 63506409 ~ 63506836 (+) True G1474645
TU1686661 lncRNA downstream 4221 63667475 ~ 63667700 (+) True G1474814
TU1686663 lncRNA downstream 5181 63668435 ~ 63668705 (+) False cdkn1a
TU1686658 lncRNA downstream 6548 63669802 ~ 63670827 (+) True cdkn1a
TU1686660 lncRNA downstream 9646 63672900 ~ 63673428 (+) True G1474813
TU1686666 lncRNA downstream 14508 63677762 ~ 63678148 (+) True G1474819
XR_005037047.1 mRNA upstream 77855 63574560 ~ 63580589 (+) True LOC118940486
XM_036950422.1 mRNA upstream 114963 63516736 ~ 63543481 (+) True LOC110494349
XM_021569319.2 mRNA upstream 187195 63466101 ~ 63471249 (+) True LOC110494347
XM_021569315.2 mRNA upstream 285890 63356672 ~ 63372554 (+) False LOC110494344
XM_021569314.2 mRNA upstream 285890 63356674 ~ 63372554 (+) True LOC110494344
XM_021569330.2 mRNA downstream 2594 63665848 ~ 63671434 (+) False cdkn1a
XM_021569331.2 mRNA downstream 3506 63666760 ~ 63671434 (+) False cdkn1a
XM_021569332.2 mRNA downstream 5267 63668521 ~ 63671434 (+) False cdkn1a
XM_021569329.2 mRNA downstream 5268 63668522 ~ 63671434 (+) False cdkn1a
XM_021569334.2 mRNA downstream 20789 63684043 ~ 63691032 (+) False tmcc2
TU1685904 other upstream 440850 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 947308 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 959629 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 2101406 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 2659381 60972478 ~ 60999063 (+) True G1471723
TU1686672 other downstream 20836 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 900120 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 945000 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 1092067 64755321 ~ 64774706 (+) False LOC110494389
TU1688070 other downstream 1092067 64755321 ~ 64780475 (+) False LOC110494389

Expression Profile