RNA id: XM_021569315.2


Basic Information

Item Value
RNA id XM_021569315.2
length 2867
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110494344
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63356672 ~ 63372554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGACAGCTTCCCTTAGTCCCCAAGCAGTGATtgtctgactgtgtgtcagtATACATCTCCGGTGCCCTCTTCCTCCAGTCACCAACCACGGACTGAGGCCAGGATCCCCTGTTCCCAGCCCccacctctgcctccctctgtcccGGTCTCCCAGTGTACCCCTCAGACGCCGGGAGCGGCCGGCCGCATTTCCGTACCACACAGGATCTTGGCTTGAAAGAGTGATAAAAAAAAGTACAAAATGGGAGCCGGAGGAAGTGTCGAAGACAAGGCATTAGCCGCAAAGTCCAAGGAGCTGGAAAAGCAGCTGGCGGAGGATGCGGACAAAGAATCCAAGACAGTCAAGCTTCTGCTGCTTGGTGCTGGTGAGTCTGGGAAGAGCACAATTGTTAAGCAGATGAAAATTCTCCATCAAGGTGGTTATACCAAAGAAGAACAATTGGAGTTCAGGGCGATCATCTATGGTAACATCCTGCAGTCTGCTCTGGCCATCATCAGAGGCATGGAGATGCTGTCCATTGACTTTGGATCACCAAAAGGAAGTGAAGACGGGCAGAAGCTGTCCAACCTGTCAGACTCCATTGAAGAGGGCTCCATGCCCCCTGAGCTGGCTGATGTCATCAAGAGGCTGTGGAGTGACAGTGGTGTCCAGGCCTCCTTCGAGAGAGCAGCCGAGTATCAGCTCAATGACTCTGCTGGCTACTACCTTGGAGAATTGGACAGAATCACAAAGTCTGATTACCTGCCCAATGAGCAGGACGTGCTGCGTTCTCGAGTCAAGACAACCGGTATCATCGAGGAGCAGTTCTCCTGCAAAGAGCTGCATTTCAGGATGTTTGATGTGGGCGGCCAGCGGTCGGAGAGAAAGAAGTGGATCCATTGTTTCGAGGGTGTAACCTGCATCATCTTCTGCGGAGCCCTCAGTGCTTATGACATGGTGCTCGTAGAGGACGATGAAGTGAACCGTATGCATGAGTCTCTCCACTTGTTCAACAGTATCTGCAACCACAGGTTCTTCGCCACCACCTCCATTGTGCTCTTCCTCAACAAGAAGGATCTTTTTGAAGAGAAGATCAAAAAGGTCCACCTCAGCATCTGCTTCCCAGACTACGATGGCCCCAACACATATGATGATGCCAGTGACTACATCAAGAAGCAGTTTGAGGAGCTGAACATGAAGAAGGGTGTCAAAGAAATCTATTCCCACTTGACCTGCGCCACGGATACAAAGAACGTGGAGATTGTGTTCGGAGCCGTGACAGACATCATTATCAAAGAGAACCTAAAATCTTGCGGTCTGTTCTAAGCAGATACACAAAGAGTTGAGCAGTAGGAACAGAAGGCACAACAGAAGGCTTTGTAATGTCATAAGACTCTTCAATTCTACACTATCCCTTCATTCCTAACTCCCAACACCCTAAATTATGGGTAATGAAGGCAAATACAAAGAAAACAGCCCCTAACTTACTCCAAAGGGAGTCAACACACATGTCCAACAAATCGAACAAAGATGGCAACATGTTCCTCACGGAGACAATGTGGACGATGTCCTTTAGATGGAAATGTGGATAAGAAGTCAGAAGAACAACCGAATGAACACGTTTGATATAGGTACTTTATTAGATATTCTGGGGTTATTTCTGGCTCTTAAATGGTTTGTGTTGAAGAAAGTGTAGAAAGCTGCTCATGGAATCCAATTGATAAACTTATGAAAGGATACATTTTGAAGAGATCCATCTTACTCAACATGGTCAGAGTGAAGTCCTTTCCAATTACACTGTTCTTGCCCAATGATTTTTAATGTTTATATCTAGTTCTGTTTGGATATGCTTACTGTTTCGCACCAGATGTAACACAGTAAAAAGTTATTCAGCTAATTTCAATCAGCGAATTCAAATAGCTGAAATTTAAGAAAAAAGTACCATCAAAACAAGTTAGCAATGTATTTTGTAAATAGGGGACCTTAAACATTAATATTCAAATACGTTATGAAAATGTTCAACATCAGTGACATGTTTAGTGATGTGCATGTATATTCCATTTTGACTACTGACAACTGAACCTGTAACTGACTTGTGAAAGATAAAcattcaaaataaaaatgtatacataGCAACTGCCATTTCTGCATGTCATCattctttgtatttttttttacaaagataTGTGATATGACCTAAAGGTCACACAAAGTTTATTTACTGTTTAAAGGAATACTTCAAAAAAAAATGTGAGGTGAGCGAGCAAATAAAAATATGAACATTTCAACCCCTTTCAACCCCATTTCAACCCCACAAAATTTCAAccccttgtaaaaaaaaaaaaacaacaacattaataCAAACACCTTACCAAGACAGTTTTGCCTTTTTGTATAATGGTTTTGAAATTCACACTCACAGGGACCACAGTTTGAGTCCTGGTCAGGGTCCCCCTCTAATGAACTACATTGATGTTAAGTTTTGTAGCCACATAATGAATGCGACTTGGACTGTTACCATTTAGGTGCAGGATACCTACAATACTATTGAACTAAAATTCTTTAAAGATGAACAAGAGCTCAAGCattagaacatttgaggtgctggtactcagctcagctccggtgagctcctgtCCAAGTCAAGCACATAATCCAAAAGGAAGGCTACAGGTCATCTTTTTTCCTAAAATGACTGTTTGCGATTTACAAATGATTACTTTGATTAACCACGCTTCAACCGAATCGAATACTACAAGGGCAAAGTGAATCATTTAAAATATTAAATTCATATGAATCacaattttaaatgtatttaacctttatttaacgaggcaagtcagttaagaaattattatttacaacgacggcctaccccggccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1685946 lncRNA upstream 1755 63354718 ~ 63354917 (+) True G1474200
TU1685945 lncRNA upstream 1983 63354357 ~ 63354689 (+) True G1474199
TU1685927 lncRNA upstream 107626 63248831 ~ 63249046 (+) True G1474181
TU1685922 lncRNA upstream 111074 63245373 ~ 63245598 (+) True G1474176
TU1685921 lncRNA upstream 111405 63245011 ~ 63245267 (+) True G1474175
TU1685948 lncRNA downstream 435 63372989 ~ 63450910 (+) True G1474202
TU1685915 lncRNA downstream 27309 63399863 ~ 63409817 (+) True G1474170
TU1686399 lncRNA downstream 82559 63455113 ~ 63455349 (+) True G1474601
TU1686402 lncRNA downstream 84334 63456888 ~ 63457111 (+) True G1474604
TU1686411 lncRNA downstream 89908 63462462 ~ 63462670 (+) True G1474613
XM_021569311.2 mRNA upstream 91159 63249564 ~ 63265513 (+) True LOC110494341
XM_021569310.2 mRNA upstream 91161 63249564 ~ 63265511 (+) False LOC110494341
XM_021569308.2 mRNA upstream 91164 63249564 ~ 63265508 (+) False LOC110494341
XM_021569307.2 mRNA upstream 91165 63249564 ~ 63265507 (+) False LOC110494341
XM_021569309.2 mRNA upstream 91168 63249564 ~ 63265504 (+) False LOC110494341
XM_021569319.2 mRNA downstream 93547 63466101 ~ 63471249 (+) True LOC110494347
XM_036950422.1 mRNA downstream 144182 63516736 ~ 63543481 (+) True LOC110494349
XR_005037047.1 mRNA downstream 202006 63574560 ~ 63580589 (+) True LOC118940486
XM_021569327.2 mRNA downstream 285819 63658373 ~ 63663255 (+) False srsf3b
XM_021569330.2 mRNA downstream 293294 63665848 ~ 63671434 (+) False cdkn1a
TU1685904 other upstream 139078 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 645536 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 657857 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1799634 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 2357609 60972478 ~ 60999063 (+) True G1471723
TU1686655 other downstream 285890 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 311536 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1190820 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1235700 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 1382767 64755321 ~ 64774706 (+) False LOC110494389

Expression Profile