RNA id: TU1684810


Basic Information

Item Value
RNA id TU1684810
length 313
RNA type TUCP
GC content 0.51
exon number 1
gene id G1473171
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62698503 ~ 62698815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catttggccattatgagtacctcgtcatgccgtacgggttaaagaatgctccagctaTCTTTCAATCCTTCGTGGATGAGATTCTCAGAGACCTGCACGGACAGGGTATGGTAGTGTATATTGACGATATTTTGATCTACTCCGCTACACgcaccgcgcatgtgtctctggtgcgcaaggttcttgggcgactgctggagcatgacctgtatgtgaaggcggagaaatgtgagttttccaaacgagccgtttccttcctgggttatcgcatttccagctcgggggtggtaatggagggtgaccgcatcaaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1684759 lncRNA upstream 30823 62663974 ~ 62667680 (+) True G1473121
TU1684791 lncRNA upstream 37292 62660980 ~ 62661211 (+) True G1473153
TU1684789 lncRNA upstream 38716 62659518 ~ 62659787 (+) True G1473151
TU1684781 lncRNA upstream 47630 62650610 ~ 62650873 (+) True G1473143
TU1684772 lncRNA upstream 69386 62625405 ~ 62629117 (+) True G1473134
TU1684807 lncRNA downstream 2162 62700977 ~ 62701275 (+) True G1473168
TU1684813 lncRNA downstream 5986 62704801 ~ 62705045 (+) True G1473174
TU1685571 lncRNA downstream 23583 62722398 ~ 62722636 (+) True G1473853
TU1685578 lncRNA downstream 27727 62726542 ~ 62727202 (+) True G1473860
TU1685581 lncRNA downstream 29493 62728308 ~ 62728638 (+) True G1473863
XM_036950398.1 mRNA upstream 48978 62575985 ~ 62649525 (+) False LOC110494319
XM_036950399.1 mRNA upstream 48978 62575985 ~ 62649525 (+) False LOC110494319
XM_036950397.1 mRNA upstream 48978 62575986 ~ 62649525 (+) True LOC110494319
XM_021567414.2 mRNA upstream 169864 62506856 ~ 62528639 (+) False LOC100136666
NM_001124637.1 mRNA upstream 170459 62507033 ~ 62528044 (+) True LOC100136666
XM_036948428.1 mRNA downstream 48956 62747771 ~ 62760165 (+) False LOC110493236
XM_036950406.1 mRNA downstream 64667 62763482 ~ 62774441 (+) False c1galt1b
XM_021569277.2 mRNA downstream 64670 62763485 ~ 62774441 (+) False c1galt1b
XM_021569279.2 mRNA downstream 64670 62763485 ~ 62774441 (+) False c1galt1b
XM_036950404.1 mRNA downstream 64670 62763485 ~ 62774441 (+) False c1galt1b
TU1684022 other upstream 1141465 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 1699440 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 2594496 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 4190618 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 5084203 57589865 ~ 57614300 (+) True G1467219
TU1684816 other downstream 11524 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 518133 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 959629 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 985275 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1864559 64563374 ~ 64565146 (+) True G1475820

Expression Profile