RNA id: XM_036950397.1


Basic Information

Item Value
RNA id XM_036950397.1
length 3599
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110494319
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62575985 ~ 62649525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctctctctctcacatacagaaTGTTAGCCCACTATCTAACCACAGAGAGAGCTCAGTGAGTCGTGGAAAGCATATTGtttctccacgtctctctccctccctctttcacttTTCCACATCTCGTCTTTGGATATCCTCCTCCTGCTTTGTGACTTAACAGAGAGTGGAACAAGCTTTCTTTCCTATTGTTTGATTTTTTTTATACTGATCTCTTCTGGGGATTACCACAGGAATGCGTTTGTGTAtttgtgggtgagtgtgtgtgtcctgtgccaTGCCCGTCCCTGGACTTTTCGGGACAAGCGGTAGTGAATCAGCATGAAGGGGGGTCACCATCAGCGGGGGTGCGGATGTCAACACCTGTTCCGAAAAGTGCTGGCCATGTGTGGCTGCTGCTATGCCCGTGTCCGAGaGTCATACTCGGCGGCGGGCAGTGAGGGCAGCATTACCCTATCCGTAGGCTCCATAGCCCCCCAGGCCTCGGGCAGCTCCAGaccctgctctccctcctccccagggGGATCGCGGCACTCTGTCAGTGCCCTGAAGAAATGGCTCACCATGCCCGTCTGCAAGCTGAGtgtgggaggaggggatgggaagGGGGTCAATCAGGTCCACAGGCTGGATGGGAAGCAACCCTCTACCCATCTACCTCTCGGCCAGGCCCTAGGAAGGCCTCTGGAGCAGGGGGAGAACTACACCATCCTCCCCTGCACTGATGGAGACCTGGGGTGGAACGATGGTCTGGTGAGTCCAGCAGCATACTCCCCAGCACACACCCTCTGCCATAGCTACCTATCTGACCTGCTGCAGAACAGGGACACACATATTCTGAACCATCAATCTTCCACCATTCTCTCGGAAGAAGAAGATGGCTCCTCCCTGATTGATGACTCAACCAGCCAATGGTCAGCCACAATGGACAgtgaagaggacaggaggagtgCCTTAGAGAAGAGCATATATGTGCTGACAGagctgatagagacagagaagatGTATGTTGACGACCTGGGATTCATAGTGGAGGGCTACATGGCCAGCATGGCCAGTCAGGGGATCCCAGAAGACATGAAGGGCAAAGACAAGATAGTGTTCGGGAACATTCACCAGATCTATGACTGGCATAAAGACTATCTTCTGGGGGAGCTGGAGAAGTGTGTGGCTGAGCCCAACAGACTGGCCCAACTCTTCATCAAgcatGAGCGGCGTCTCCACATGTACGTAGTGTACTGTCAGAACAAGCCCAAGTCAGAGCACATTGTCTCAGAGTATATCGAGACCTATTTTGAGGAGCTGAGGCAGCAGCTGGGCCACAGACTACAACTCAACGACCTGCTTATCAAACCAGTACAGAGGATCATGAAATACCAACTACtgctcaagGACTTCCTGAAGTACTACACCAAAGCAGGAAGGGATACCTCAGAGCTGGAGAGAGCGGTGGAGGTGATGTGTTTCGTGCCCAAGCGATGTAATGATATGATGAACGTGGGCAGACTGCAGGGCTTTGAGggGAAGATCACAGCCCAGGGGAAACTGCTCCAGCAGGACACCTTTACAGTTAGTGAGCAGGACAGCAGCTTCCTGTCCCGTGCCAAAGAGAGGCGGGTCTTCCTGTTTGAACAGCTGGTCATTATCAGTGAACCAATCGATAGGAAGAAGGGCTTCTCTCTGCCAGGGTACACCTTTAAAAACAGCATCAAGCTCAGTTGTCTGGGTGTGGAGGACCACTGTGAGGAGGACCCATGTCGTCTGGTCCTGACGTCCCGCGGGTCTGATGGGAGCGTTGCACGCTTCGTTCTGCAGGCCTCGTCCCAGGAGACTCGGAGGGCCTGGGTCAACGACGTTGTCCAGATCCTGGAGACCCAGAGGAACTTCCTCAACGCTCTCCAGTCTCCTATAGAGTACCAGCGCAGGGAGAGTAAGTCCAACAGCCTGAGAGGAGCCATGAATGCTCCCGTTGTACCGACCTCTGGCCTGCGACCCCACTCCTCTGCCTCCATTGACCGCCACCGGCTACCCAACCTGCGTTCTTACAATACCTCCCTGCCCTCCCTCCACCTGCCCAGCCAGCCCCCTGCAGACACACAGTCCCCGCTGTATCTTAGCCCTGCGACACCCCatccctcccatctccctctgACCAGCCCTCAACAGCTTAGCAATGGCCTGCGCCCCCCTGCCCAGCACAGCTTGCAGGGGGGTACTGACAGATACCATGGACCCATGCCGGGGGAGGGAGGAGATTATGCACCAAATCACTCTGGCAACCATGATCAGCTGACAGATCTCTCTCTGCATGAGCATGAGTGCTGATGATGTGTGATGACCTTTGGCCTCACATACTGAATGAGGGGGTGTATGGTGAAGCTGCCCCTAGATGCTGATATTAGTTTAGTTTTGCATTATCCCCAGTAATGGCTAAGGTTCGGTTTGGGCGatggggaagctgatcctagatctgtgcctagagGAGACTTCACCCTGGAGTTAATGAGGGGCAGGCTGAGAGACCCCTGGCTAGCCTGGCTCTACTCCACAGAGGACAGGCAGGGGGCCTGGGGCGGGATCACTCCTTGTGATTACCCTAATATTGCTATATTACTATTACTATGGTATCTCTAGCTTGTAATAAGGATTATTTtgtgtgtatttctgtctttATATTATATTTTCTACTATTTTGAAACCTCTACTTACTATTGTGATGTCAGAAGTGAAGCAGAATTGCAGCCCTCTATGGTGTTTCTGTGAGAGAAATTGAAAAGTAACCAGTGGTCTCTGATGttgacagtgtgtttgtgtgcgcatgTTGGTATGTATGTGTGACTGCTACATTGCATCTGTGATGCGATGGTAGCTGTTCACATTGCAAATggtttctacagtacagtacccctAAGTTTGTCAAGAGTTAATACATGATTGAACTTCATATGGTGACATTTTTAACACAATTTGGTTTCATAAAGAAATGAGACATTTGGGACCGCTTCTTAAGTCGCCAACTCTTTACTGTTGCTTTAATCTTAAACAGGCAAACCATATTATCATTATGCTACTGCTACGTGTGACAGCTTCGATCACGTTGTACAAGAAGGGAAGCAAAGACTAGTGGGCGATAATGGCATgtctattctctgtctctctttttataTAGCTAACCAGTACGCTCCTATCCTGAATTCATCCTCATCACTATGTCATGAAGCAGCCTTTGGGTGAAGAGTGTTGACATACAGCAATGACATTGTGGTCCTTATACAGTTTTGAAATGGATTGTGGGACGGAATCTGTCTAGGAGTTGAGCAGCTGCAGTCATGACTGTCTACTCTATGCATACAGAAGCAGCACAGTAATAATTGATACGTTTTCCTTCATTTTAGCGGCTACTTTAACACTGCCATTGTTCCAACGTTATCTGAAGAAAACACACGGAAACTCACACAAAGCCCACTCAtagctgaaggagagagaggaaaagggaacAAAGTTCAAGGGGTTGTTCATCTGTCAATGTCATTATGAATGTAAATAATATTCTGTGGGACCATATCAATAAAAACAAAATGCAACACTGCA

Function

GO: NA

KEGG:

id description
K20690 ARHGEF25; Rho guanine nucleotide exchange factor 25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1684721 lncRNA upstream 7528 62568220 ~ 62568458 (+) True G1473085
TU1684719 lncRNA upstream 9687 62566094 ~ 62566299 (+) True G1473083
TU1684718 lncRNA upstream 9920 62565749 ~ 62566066 (+) True G1473082
TU1684701 lncRNA upstream 23743 62551800 ~ 62552243 (+) True G1473067
TU1684593 lncRNA upstream 205372 62367843 ~ 62370614 (+) True G1472966
TU1684781 lncRNA downstream 1085 62650610 ~ 62650873 (+) True G1473143
TU1684789 lncRNA downstream 9993 62659518 ~ 62659787 (+) True G1473151
TU1684791 lncRNA downstream 11455 62660980 ~ 62661211 (+) True G1473153
TU1684759 lncRNA downstream 14449 62663974 ~ 62667680 (+) True G1473121
TU1684807 lncRNA downstream 51452 62700977 ~ 62701275 (+) True G1473168
XM_021567414.2 mRNA upstream 47347 62506856 ~ 62528639 (+) False LOC100136666
NM_001124637.1 mRNA upstream 47942 62507033 ~ 62528044 (+) True LOC100136666
XM_021569274.2 mRNA upstream 79455 62491971 ~ 62496531 (+) True LOC110494318
XM_021569271.2 mRNA upstream 84836 62471931 ~ 62491150 (+) True LOC110494314
LOC110493234 mRNA upstream 142921 62426544 ~ 62433065 (+) True LOC110493234
XM_036948428.1 mRNA downstream 98246 62747771 ~ 62760165 (+) False LOC110493236
XM_036950406.1 mRNA downstream 113957 62763482 ~ 62774441 (+) False c1galt1b
XM_021569277.2 mRNA downstream 113960 62763485 ~ 62774441 (+) False c1galt1b
XM_021569279.2 mRNA downstream 113960 62763485 ~ 62774441 (+) False c1galt1b
XM_036950404.1 mRNA downstream 113960 62763485 ~ 62774441 (+) False c1galt1b
TU1684022 other upstream 1018948 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 1576923 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 2471979 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 4068101 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 4961686 57589865 ~ 57614300 (+) True G1467219
TU1684810 other downstream 48978 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 60814 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 567423 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 1008919 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 1034565 63684090 ~ 63688090 (+) True tmcc2

Expression Profile