RNA id: XM_036948428.1


Basic Information

Item Value
RNA id XM_036948428.1
length 2551
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110493236
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62747771 ~ 62760165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCTTGTGTCCAGCAAATACAAGCAGATGTATGAATGCCGCCTTCCAGCCCAGGCAGTGAGGTTTCACCAGGACGGAGCCTCTGAGCCTGACTCCCAAGGCTACACCGGACCAAGCATCCCAGACTTGCTCAAGCCTATGCACACTGCCCCTTGCCTAGTGAAGGCGAAAGACTGGTGGACATATGAGTTCTGCTATGGACAACACATTAGACAGTACCATCTTGAGGACACAGGTGTCAAAGGGGATGTTTTCTTCCCGGGTTACTTTGATTCAGAGTTTGACTGGATCAATGAAACAGCCAAGGCTGGAGAGGATGCCTTTGATAATCAGCTCACAGATAATGAGGTCACAGAGGATGCTTTTGGAGATGAAACATTCAACTTCAAGGTCATCACAGACCCTGCAGACCTGATGAAATTTGTGCAGAATCTAAAAGAGAGCAACAGAAAGAAAGCACAAAATGAAGCCGAAAGAGAGGCACTGAGGAAGGAAAAGGAGAGACGAGGAGCCGAGGATGAAGAAGAGCGTCTCCTGCTGCAGGAGTTTGATGAAGAGATAGCTGGCCTCTCGGTGCCCTCTGCCAACATCGAGGAGATGAAAGAGGAAATGCAAAAGAAGTTTGACAACATCATAGACGAGCAGGAGCTGGACACAGAGGGTCTGAAGGGGGAGTTTGACCGCACTCAGGCCACCCAGACTTTTGAGACAACTCTGGACAAGCTGCTGAACCACTTAGAGGACAAAGACGCCGGGGACACAGAGGCAGAGCACCTGACAGAGGGAGGCCAGAAGGCCAACGACCCAGCCAGGGGCAGCCCCAGCCTGGCCCCCCAACAGCCAGAGATCCCCCCTACATCCTGCTGCCCTACGTATACTTGTTGGGAGGGgacctctgtttgtctctcttgtCTCGTCACCCCAAACCAAGCGACTGACGACCATGTTCAAATCAGAGTTACTAAGTATAAGACGAGCGGCAGCCCCGATGGGGAGGTCGAAGTTCAGGAGATGGGCGAAGGCGACCTCAAGTGGCAGCATATTAAGGACATGGTTAAAGGACAGCTAGAGAAGGCGGGACTGAAGGCCGAAGgtCAAATTGAGGTGAAGATTTTAACACCAAGGACAGCTGAGGATCAGTGGCTGACTGAAGAAGATACTAAGTCATTCAGAGAGCTGCTCATCAACCTCTTGACAGGGGGAACAGATGGAGTTTACAAGTAGCAAAAGAGACATCAGGAGTTGGAAAACAACTACAGATTTGTATGGGGAGAGAGACCAGAAGAGGCCCAGTACACCAGTACTGCACCGGTCTCAGACGATGTGGAGTTATGAGCTCTGGGGAGATGTTTACTTGCATCGTGGGAACCAAGCACCTGTGGAGGCTAGGTGCGGGGAGTGTCCCTCGCCACTGTCAGAACTCTGAACTCACTGCTAAGTCTCAGCTGCCCCTTGGGCCCGACTGGAAGCACCAGTGTCCACAAGTACACCTGTTCCCACACTTAGAAATGTGTTGTCCCTATCAGGCACCCTTATGTGCCTTACACAAATCAATCCAAATGTCTTAGctgtggtggtgtaatggtggcAGGTTTTGTTTTCTCTCCTCAATGTGATGGCTGAAAAGGGGCATTATTTCAATGTCTATGTTGGGTTGAGAGGAGGGTTGGAAAAACACCATGGACTTGGCAATCTGTACCTGTGAAAATGGATCTAAGGCTTGGACTGAATGGGGTTTAACTTGACATTTCTACAGAAGTATGATGCCCTGTCCTTGCGTTGCCACACAGCAGTGCTTAAAAACACAGTGGCGTAGTTATATCTGCTGCTCTACAGTGTGAGGAAAGGATCTCCGGGAGTGATGCAATGGAGGAATTCACCTGGTATTTACATTTGGCGTCACAAAATGATACAGTATGTTTGCAAAAGGAGGCTACTGTTTACCAGTTATCTTTTATTGTTTAGTCATTCTACATTTATTTATACAGAATGCCGATTCGGAAACCTGAAAAAGAGTGAGAACCACATGCTGTTGTGGTTTAGAGGTTGAACCACAGTTTGAATATTTAAATGAGAACCAGTGTAATTTAGTGAAGCTTATTCAACTCTTTAATTGTTCATTGTAGAATTGACATACTTGATGAAACATTCATCATATTCCATATACATTTGGGAGCACTTTAAAAGTTGAGAAATGGTTCTGGAAAGTTGTACATTTTGTCAACTGTCATGAATGTTTAGAACTGTTATTTTATGTTTCAGATTTTTTTGGTTTGATGCCAGCAAACCCAAAAATACTTATCCTATTTTCATTTGAGAAGTTATTTCTCAGAAATAGTGATTGGAGCTCAGCTGTTCCTGTCAACAAAATGTTAGTTTAGTTCGTTTTTTTGGCGCAAAGGTTTCCTCAGTGATAAATGCATGCCATTTAGCCAAcaattttatccaaagtgacagtcaggcgtgcatacattttacatatacagtggggagaacaagtatttgatacactgccgattttgcaggttttcctacttacaaagcatgtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1685604 lncRNA upstream 3208 62744257 ~ 62744563 (+) True G1473885
TU1685581 lncRNA upstream 19133 62728308 ~ 62728638 (+) True G1473863
TU1685578 lncRNA upstream 20569 62726542 ~ 62727202 (+) True G1473860
TU1685571 lncRNA upstream 25135 62722398 ~ 62722636 (+) True G1473853
TU1684813 lncRNA upstream 42726 62704801 ~ 62705045 (+) True G1473174
TU1685642 lncRNA downstream 1618 62761783 ~ 62762223 (+) True G1473920
TU1685644 lncRNA downstream 2644 62762809 ~ 62763078 (+) True G1473921
TU1685650 lncRNA downstream 10382 62770547 ~ 62770913 (+) True G1473927
TU1685646 lncRNA downstream 14574 62774739 ~ 62777246 (+) True G1473923
TU1685647 lncRNA downstream 17731 62777896 ~ 62778280 (+) True G1473924
XM_036950398.1 mRNA upstream 98246 62575985 ~ 62649525 (+) False LOC110494319
XM_036950399.1 mRNA upstream 98246 62575985 ~ 62649525 (+) False LOC110494319
XM_036950397.1 mRNA upstream 98246 62575986 ~ 62649525 (+) True LOC110494319
XM_021567414.2 mRNA upstream 219132 62506856 ~ 62528639 (+) False LOC100136666
NM_001124637.1 mRNA upstream 219727 62507033 ~ 62528044 (+) True LOC100136666
XM_036950406.1 mRNA downstream 3317 62763482 ~ 62774441 (+) False c1galt1b
XM_021569277.2 mRNA downstream 3320 62763485 ~ 62774441 (+) False c1galt1b
XM_021569279.2 mRNA downstream 3320 62763485 ~ 62774441 (+) False c1galt1b
XM_036950404.1 mRNA downstream 3320 62763485 ~ 62774441 (+) False c1galt1b
XM_036950402.1 mRNA downstream 3710 62763875 ~ 62774441 (+) False c1galt1b
TU1684816 other upstream 36635 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 48956 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1190733 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 1748708 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 2643764 60101892 ~ 60104007 (+) False G1470607
TU1685904 other downstream 456783 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 898279 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 923925 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1803209 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1848089 64608254 ~ 64622169 (+) True LOC110494386

Expression Profile