RNA id: TU1684789


Basic Information

Item Value
RNA id TU1684789
length 270
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1473151
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62659518 ~ 62659787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTCTCCAAGATTCCTTTCTGTATCCTTCTGTAAGATCattaacatgtcacatactgtaatCTTCAAGGTAACTCACAGATGCAGATTTGAGATAATTAGGCTAGGCTATATGGCTATCCTTACCTGTCAACAGTTGCATGCTGAAGAGGGCCTGGTCGGTTTTATATGATGGGCGGAAAACATTACTCTGAATTCTAGTGGAATATTAAACAGCACTACAGAGAGTGTAGCTCCGTGTATCATCCTGATTTTGTAGAGGAATCAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1684781 lncRNA upstream 8645 62650610 ~ 62650873 (+) True G1473143
TU1684772 lncRNA upstream 30401 62625405 ~ 62629117 (+) True G1473134
TU1684758 lncRNA upstream 47675 62611137 ~ 62611843 (+) True G1473120
TU1684721 lncRNA upstream 91060 62568220 ~ 62568458 (+) True G1473085
TU1684719 lncRNA upstream 93219 62566094 ~ 62566299 (+) True G1473083
TU1684791 lncRNA downstream 1193 62660980 ~ 62661211 (+) True G1473153
TU1684759 lncRNA downstream 4187 62663974 ~ 62667680 (+) True G1473121
TU1684807 lncRNA downstream 41190 62700977 ~ 62701275 (+) True G1473168
TU1684813 lncRNA downstream 45014 62704801 ~ 62705045 (+) True G1473174
TU1685571 lncRNA downstream 62611 62722398 ~ 62722636 (+) True G1473853
XM_036950398.1 mRNA upstream 9993 62575985 ~ 62649525 (+) False LOC110494319
XM_036950399.1 mRNA upstream 9993 62575985 ~ 62649525 (+) False LOC110494319
XM_036950397.1 mRNA upstream 9993 62575986 ~ 62649525 (+) True LOC110494319
XM_021567414.2 mRNA upstream 130879 62506856 ~ 62528639 (+) False LOC100136666
XM_036948428.1 mRNA downstream 87984 62747771 ~ 62760165 (+) False LOC110493236
XM_036950406.1 mRNA downstream 103695 62763482 ~ 62774441 (+) False c1galt1b
XM_021569277.2 mRNA downstream 103698 62763485 ~ 62774441 (+) False c1galt1b
XM_021569279.2 mRNA downstream 103698 62763485 ~ 62774441 (+) False c1galt1b
XM_036950404.1 mRNA downstream 103698 62763485 ~ 62774441 (+) False c1galt1b
TU1684022 other upstream 1102480 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 1660455 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 2555511 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 4151633 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 5045218 57589865 ~ 57614300 (+) True G1467219
TU1684810 other downstream 38716 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 50552 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 557161 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 998657 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 1024303 63684090 ~ 63688090 (+) True tmcc2

Expression Profile