XLOC_034696 (zgc:92429)


Basic Information

Item Value
gene id XLOC_034696
gene name zgc:92429
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 23727768 ~ 23745984 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067522
AGAATATCCCTTCTCTTTCCATGGCTGTGGCTGTTCCTTCTGGATCTCTCCTTGGCTGAAAGTTCTGGAAAATCTTCACAGCAGCAGGACAAGTTCATAAAGACCCCAGACCAATACAGGACAGCgcatttcaacaacaacaacaacagcaacaaaaaagagATAAAGTCCAGTGATTAAAAGTCAACTGGAATATTAAACAGGGCAACATGGCTCTACTATGTTACAACAGAGGCTGCGGGGATCGATTTGATGCAGACAAAAACACTGATGATGCCTGTCGGTTTCACCCAGGAGTGCCAATCTTCCACGACGCCTTAAAGGGCTGGTCGTGCTGTAAAAAGCGGACGACAGATTTCTCGGAGTTCCTGTCAATCAAGGGCTGCACCCGCGGACGTCACAGTAATGAGAAGCCGGAAGAGCCTCTGCGGCCTGAGGTCACGTCTGAGAAAGGAGGCATGAAGCAGCACGGCACAGCAGAGGAGATCATCTACCAGGGGCCCAAATCTGCAGAGGCTCTGGAAAAAGAAAGACCTAGCTCAGATGAGCCCAAGACAAAGCTGCAGGTGAAGATCTCTCCATCTCTGATTCAGATCATGGAGAAAATGGAGATCAgcgagagagagaagagagagaagcTCGAGAGTCAAGCTCTTGTGGTTGGGATTAAGTGCAAAAACACAGGATGCAGAAAGtctTATGAGGGTCCTGAGACCAATGCGGAGATCTGCATATATCATCCTGGAGCTCCTGTTTTCCATGAAGGatacaaatacTGGAACTGCTGCTGTATAAAAACCACCGACTTTAACGCCTTCCTGGACCAGAAGGGCTGTACATCTGGAAAGCATTGCTGGATCCCCAAACAGGATAAAAAGAAGGTGGCCTGTCGACATGATTGGCATCAGACTGGAAGCCAGGTTGTTGTCACGATCTACGCCAAAAACTGCAATCCAGATCATTCCTATGTGGAGGCCAACCGCACTGTGTTAACCTGCCACATTCAGTTCGAAGGCGACAAAGTGTTCCATAAGGACATCCACTTATGGGGGGTGATTGACGTAAAGAGCAGTTTGGTAAACATGGTGCCGTCTAAGGTTGAGGTGAGCATGAGGAAGGCTGATGCTGTAgcctgggggaaactggaggacccCAAACACAAACCCGAGCCAGAGCTCACCGACAACATGAACAGCGCAGAGCAGGAGGAGGTCAAGCCCCAGTGGGACATTTCAGACGACGACATCAGCGAGTCTGACTGGGAGgacgatgaagaggaggaggagaagaaaaaagaagaaaaacagaaGGAAGAGTCCGGGGATGGACCGCCTGAGCTAGAGCAGCCTGCTGATGTCAAACAAgagaaatgaacatttatactgCAGTGTCATGTTTACAAGCACATAGGGGATATATACAAAGCAGTCAGGCATGTCaggttttttttaagcaaattttcTCACACAGTTGTATTTGTGAACATATTTTTGTGTTAAAAGTTGGAGAAGTCTTACAATaccttttcttttaattttgcagtttcatcaagattttgaaaataaattcacTGTTAAGAAGTAGGAGTGAGAAATTTTTAAGTTCAAGATGTTTCATTTTTGAAAGAATTCTCGCAcagcaaggctgcatttatttagtcAGTAAAGCAATAATATTGATTACAGCATGTACTGTCACATGAGACTTCAGAAATCACTGTAATGTGCTTTTCTTTGTAATTTGTTGCAGAAGAAACATTCAAGAAGCAGGATTATTTACTGGAACTGGACCGGAAATAAAAGTATTCAGGTTACA
>TCONS_00067523
TTCTGTTTTCCTCTTCAGCTCAGATGAGCCCAAGACAAAGCTGCAGGTGAAGATCTCTCCATCTCTGATTCAGATCATGGAGAAAATGGAGATCAgcgagagagagaagagagagaagcTCGAGAGTCAAGCTCTTGTGGTTGGGATTAAGTGCAAAAACACAGGATGCAGAAAGGTACAtctTATGAGGGTCCTGAGACCAATGCGGAGATCTGCATATATCATCCTGGAGCTCCTGTTTTCCATGAAGGatacaaatacTGGAACTGCTGCTGTATAAAAACCACCGACTTTAACGCCTTCCTGGACCAGAAGGGCTGTACATCTGGAAAGCATTGCTGGATCCCCAAACAGGATAAAAAGAAGGTGGCCTGTCGACATGATTGGCATCAGACTGGAAGCCAGGTTGTTGTCACGATCTACGCCAAAAACTGCAATCCAGATCATTCCTATGTGGAGGCCAACCGCACTGTGTTAACCTGCCACATTCAGTTCGAAGGCGACAAAGTGTTCCATAAGGACATCCACTTATGGGGG
>TCONS_00067524
TGAGCACACATCCGGATTGCAGTATAAGGTCAATAGACTACATACTTATATGCAGCTCGCATATAAGTATGTAgtatgtaatattcattaattttcctttggcttagtcccttatatatcagaggtcgccacagcagaatgaactgccaactattttggtatatgtttaatgcagcagatgccattccagttgcaacccagtactgggaaacacccattcacacaatacgaccaatttagttcatccaattaacttatagcacatgtctttggactgtgggggaaaccggagcacctggaggaaacccacaagtacatggagagaacatgcaaactccactccaactagcccagctgggactcaaaccagtgaccttcttgctgcgaggtgacagtgctaaccactggcccACCATGCCGCCACAATACCtgaataattcattattattattttttttactctaaaatGGAAAAGCACTTATTCCTCTGGTCAATAAAAAGAGACAGTGACTTGTTTTGACTTCTGTTTTCCTCTTCAGCTCAGATGAGCCCAAGACAAAGCTGCAGGTGAAGATCTCTCCATCTCTGATTCAGATCATGGAGAAAATGGAGATCAgcgagagagagaagagagagaagcTCGAGAGTCAAGCTCTTGTGGTTGGGATTAAGTGCAAAAACACAGGATGCAGAAAGtctTATGAGGGTCCTGAGACCAATGCGGAGATCTGCATATATCATCCTGGAGCTCCTGTTTTCCATGAAGGatacaaatacTGGAACTGCTGCTGTATAAAAACCACCGACTTTAACGCCTTCCTGGACCAGAAGGGCTGTACATCTGGAAAGCATTGCTGGATCCCCAAACAGGATAAAAAGAAGGTGGCCTGTCGACATGATTGGCATCAGACTGGAAGCCAGGTTGTTGTCACGATCTACGCCAAAAACTGC
>TCONS_00067525
TGGAATATTAAACAGGGCAACATGGCTCTACTATGTTACAACAGAGGCTGCGGGGATCGATTTGATGCAGACAAAAACACTGATGATGCCTGTCGGTTTCACCCAGGAGTGCCAATCTTCCACGACGCCTTAAAGGGCTGGTCGTGCTGTAAAAAGCGGACGACAGATTTCTCGGAGTTCCTGTCAATCAAGGTATGCTAATAATATGATAATCGTCATGCTGCTTTTCATACGATGCACATACTGTAGACTAGACGGAAATTACATCTCCGACACCCTCCAAATACTGAATGGTAAAACAGAATTGTAATACAACCCCCACCCTCGGCCGACACACACAGTTGAATATgtctcattttgttttttttaattatatctaTAATTTTACCACACACATTATATAggcaattttttaattaattgattaatttttattcaatatatcagAATCACAgacagggatgggcagtatttatgatacaagtatttaaaaaacatttcaaatacaaaatagtattttgt

Function

symbol description
zgc:92429 Predicted to enable zinc ion binding activity. Predicted to be involved in centrosome duplication. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Orthologous to human ITGB1BP2 (integrin subunit beta 1 binding protein 2).

GO:

id name namespace
GO:0051298 centrosome duplication biological_process
GO:0005575 cellular_component cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-194 Predicted to enable zinc ion binding activity. Predicted to be involved in centrosome duplication. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Orthologous to human ITGB1BP2 (integrin subunit beta 1 binding protein 2).

Ensembl:

ensembl_id ENSDARG00000030176

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067522 False 1815 mRNA 0.45 11 23727768 23745984
TCONS_00067523 False 537 lncRNA 0.47 6 23731048 23739249
TCONS_00067524 False 951 lncRNA 0.44 5 23731251 23739770
TCONS_00067525 True 522 lncRNA 0.37 3 23743576 23745796

Neighbor

gene id symbol gene type direction distance location
XLOC_034695 NA coding downstream 153591 23569727 ~ 23574177 (-)
XLOC_034694 gpr185b coding downstream 164676 23561035 ~ 23563092 (-)
XLOC_034693 NA coding downstream 181184 23545693 ~ 23546584 (-)
XLOC_034692 NA coding downstream 233260 23493425 ~ 23494508 (-)
XLOC_034691 si:dkey-171c9.3 coding downstream 745972 22968756 ~ 22981796 (-)
XLOC_034697 si:ch211-200p22.4 coding upstream 2987 23748971 ~ 23848012 (-)
XLOC_034698 NA coding upstream 106503 23852487 ~ 23858327 (-)
XLOC_034699 zgc:162171 coding upstream 119352 23865336 ~ 23873173 (-)
XLOC_034700 vbp1 coding upstream 140772 23886756 ~ 23894879 (-)
XLOC_034701 CR388231.5 coding upstream 156500 23902484 ~ 23906493 (-)
XLOC_034690 CR381635.1 non-coding downstream 790520 22937129 ~ 22937248 (-)
XLOC_034685 BX470211.1 non-coding downstream 1060171 22664936 ~ 22667597 (-)
XLOC_034702 NA non-coding upstream 200017 23946001 ~ 23949685 (-)
XLOC_034707 CR388231.6 non-coding upstream 312784 24058768 ~ 24069896 (-)
XLOC_034720 NA non-coding upstream 834983 24580967 ~ 24589865 (-)

Expression


Co-expression Network