G1550122


Basic Information

Item Value
gene id G1550122
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42345906 ~ 42347312 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1773690
ttggGTGTACAGTCAACATTACAAGAGCAgcacgttttttttttacaataaaataattacaattgCAACAATAATAGAAATAACAATATCCATAAAATAGCCAAATTGAGTCATTTCACACTTGACAACATATTGTCTATATATTTTCTGTTTTAAAAGGAAATAGTTCATTTATTTATGGAATGATGTATGATTCCTGTTGAGTGACCGTCATCTCACTCACGTTCTCTTTTGTGACAGGTATCAGTTTGAATGTGGTCAAATGCAGAGGAACATGGCATGGGTCTcaattagggttgcaaagggagggtatattactggagaCCTTCAGTTTACTAGTAAACTACCCACATTTTTGTATCTTTGAATGATTGTAAGATACTAAAATTATCACAAGACATCAGGTGGCCCTTTTGAGTCactcagattatcacaggtgtctgtatttatctctggccctctgtgtagccttatcacatgtaaaatataagCTGTAAAACTTTGTCCTAAATATAAACAATCaatttagtgaataccattgatgtttaatatgagggtttcagtgtgaaatatatttacatgtataaatatacactaccgttcaaaagtttgaggtcacttagaaatgtccttgattttgaaagaaaagcaactttttctgtccattaaaatatctaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaatggctgatttttaatggaatatctacataggcgtacagagtcccataatcagcaaccatcactctcctgtgttccaatggcacattgtgttagctaatcgaagtttatcattttaaaaggataattgatcattaaaaaacccttttgcaattatgttagcacagctgaaaactgttgttgtatttaaagaagcaataaaactgtccttctttagcatcagcatttgtgggttcgattacaggctcaaaatggccagaaacaaagacctttcttctgaaacctgtcagtctattcttgttctgagaaatgaaggctattccatgcgagaaattgccaagaaactgaagatctcgtacaacgctgtgtactactcccttcacagaacagcacaaactggctctaacgagaatagaatagagtgggaggccccagtgcacaactgaacaagaggacaagtacattagagtgtctagtttgagaaacagacgcctcacaagtcatcaactggcagtttcattaaatagtacccgcaaaaccccagtctcaatgtcaaaagtgaagaggcgactttgggaaggtcagtcaatacagaaaatgtcaataactttgaacgtttcttcaagtgcagtcgcaaaaaccattaagcgctatgatgaaactggctctcatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1773690 True 1407 lncRNA 0.36 1 42345906 42347312

Neighbor

gene id symbol gene type direction distance location
LOC110496300 LOC106588320 coding downstream 48134 42291667 ~ 42297772 (-)
LOC110496299 LOC106569884 coding downstream 58974 42279525 ~ 42286932 (-)
LOC110496297 LOC106588322 coding downstream 77816 42145158 ~ 42268090 (-)
LOC110496298 LOC106588323 coding downstream 213687 42105604 ~ 42132219 (-)
LOC100135825 tyr coding downstream 252706 42088179 ~ 42093200 (-)
stom stom coding upstream 93033 42440345 ~ 42451777 (-)
LOC110496307 LOC106588314 coding upstream 192015 42539327 ~ 42542965 (-)
LOC110496309 thap7 coding upstream 208412 42555724 ~ 42588918 (-)
LOC110496310 LOC106588521 coding upstream 270762 42618074 ~ 42624506 (-)
LOC110496315 NA coding upstream 441208 42788520 ~ 42804428 (-)
G1550123 NA non-coding downstream 126 42340033 ~ 42345780 (-)
G1550193 NA non-coding downstream 7307 42338374 ~ 42338599 (-)
G1550192 NA non-coding downstream 7749 42337857 ~ 42338157 (-)
G1550191 NA non-coding downstream 8770 42336915 ~ 42337136 (-)
G1550190 LOC106588319 non-coding downstream 9398 42336282 ~ 42336508 (-)
G1550195 NA non-coding upstream 432 42347744 ~ 42347955 (-)
G1550196 NA non-coding upstream 1066 42348378 ~ 42348592 (-)
G1550197 NA non-coding upstream 1983 42349295 ~ 42349573 (-)
G1550198 NA non-coding upstream 2666 42349978 ~ 42350205 (-)
G1550200 NA non-coding upstream 9074 42356386 ~ 42356660 (-)
G1550177 LOC106569881 other downstream 29827 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 674392 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1437281 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1660265 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1954023 40385970 ~ 40391883 (-)
G1550202 NA other upstream 11836 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 547719 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1283694 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2473451 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 2700368 45047680 ~ 45087786 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G18967 NA non-coding CI01000001 null 10434219 ~ 10434542 (+)