XLOC_034949 (si:dkey-23n7.10)


Basic Information

Item Value
gene id XLOC_034949
gene name si:dkey-23n7.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38787831 ~ 38792543 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067969
AGCAGTTGTGAAATGTTTTTCTATCGTCCAGCTGTGTGAACACCCATACACAAAACTCTCAGTGGCGGTACAGACTTCATTTCAAAAGCTGGTTTTAAGCTCCAAGAGAGTCTTTTCTCTTTCAAATTATACTTTGGGTTACAGAACTCCACGTACATTTGGAGAGTAAATGTGTCACTCACTCAGAGGTCACTGTCAGGAGAGCTGGGAATGGGACCCGGACAGTAAATCCCCTGATGCTCATGTGTCGGTGTGCCGACAAGCCGTGTATTTCCACATCAGCCCTCTGCTGGACAGTCAGGGCACTGCAGGCGTCAGAGGCACCAAAGGTTTTACTCATGGTGAGCATTACTGGGAGATTGAGTTCCTGGAGCCTCCTTATGGAAGCTCTGTGATGGTGGGGGTCGGTACCCAAAATGCACTGCTGCACACAGGAGACCAAACGTTTGTCAATCTCATAGGCATGGACAGTGAGAGCTGGGGTCTGTCATATAAAGGCTATATCTGGCATAAAGGAAGGAGCCGGAAATACACAGAGGCTTTTTATGAAAGAAACACAGTCATTGGGGTTCTGTTGGACTTAAGCGCAGGAACACTGACGTTCTCCCGAAATGGAGTAAACCTTGGGGTGGCCTTCACTGGCCTGGAGCAgGTCGGCAAGGCTTTGTATCCTCTGGTGAGCTCGACTGCTCCAGAAACTGAGCTTCAGCTGGGGTTGAGAAGCCAGAGAATCTCCTCTCTGCAGGAACACTGCATACACATCATCACACAGTCACTTTCACAAGGTAGACGTGCAAAGGGACTGCCATTACCCGCATCTCTACTctgtcaaatacacacacatgctctttTATAAGCAGGCAATGGCCTGTTTCTGATTTAGAAAATGCCATGAAACAACGCAGAACCTCCAGTGCTACAGATGCGTTATACTATGCAGCTTACCTcaagttttattatatatttttaaaatgtaaattgaaGAACAAAAGTGTTGTCCAAAGATTTTAAGAGCCAAAATAAAAGTGCAATGCAGCATTACGTTTTAAATGCTGCTCTACAGCCAGTTCCC
>TCONS_00067970
GGAAGCTCTGTGATGGTGGGGGTCGGTACCCAAAATGCACTGCTGCACACAGGAGACCAAACGTTTGTCAATCTCATAGGCATGGACAGTGAGAGCTGGGGTCTGTCATATAAAGGCTATATCTGGCATAAAGGAAGGAGCCGGAAATACACAGAGGCTTTTTATGAAAGAAACACAGTCATTGGGGTTCTGTTGGACTTAAGCGCAGGAACACTGACGTTCTCCCGAAATGGAGTAAACCTTGGGGTGGCCTTCACTGGCCTGGAGCAggtaaaatgatttatttaacaattaTGCACGTGTTTAGGTTACTCTATGTATGCATTCCTTGTtcttttaaatgcaaagctgCAGTATCATTTTTCTTGTTATGAAAATAGCCATAGAAGCTGGCATGACATTAAACAAAGAAAATGCCTGCAGAACGTTTGTGTTCTTTGCAGGTCGGCAAGGCTTTGTATCCTCTGGTGAGCTCGACTGCTCCAGAAACTGAGCTTCAGCTGGGGTTGAGAAGCCAGAGAATCTCCTCTCTGCAGGAACACTGCATACACATCATCACACAGTCACTTTCACAAGGTAGACGTGCAAAGGGACTGCCATTACCCGCATCTCTACTctgtcaaatacacacacatgctctttTATAAGCAGGCAATGGCCTGTTTCTGATTTAGAAAATGCCATGAAACAACGCAGAACCTCCAGTGCTACAGATGCGTTATACTATGCAGCTTACCTcaagttttattatatatttttaaaatgtaaat

Function

symbol description
si:dkey-23n7.10 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex.

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-64 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex.

Ensembl:

ensembl_id ENSDARG00000104129

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067969 False 1072 mRNA 0.46 5 38787831 38792543
TCONS_00067970 True 770 mRNA 0.44 2 38787924 38790341

Neighbor

gene id symbol gene type direction distance location
XLOC_034948 BX957256.1 coding downstream 19922 38756326 ~ 38767909 (-)
XLOC_034947 fbxo3 coding downstream 73269 38703338 ~ 38714562 (-)
XLOC_034946 cd59 coding downstream 89167 38695719 ~ 38698664 (-)
XLOC_034945 aplnr2 coding downstream 98269 38685545 ~ 38689562 (-)
XLOC_034944 c6ast1 coding downstream 122862 38661107 ~ 38664969 (-)
XLOC_034950 atg13 coding upstream 1289 38793832 ~ 38807827 (-)
XLOC_034951 phf21aa coding upstream 28895 38821438 ~ 38861741 (-)
XLOC_034952 CR382325.1 coding upstream 185459 38978002 ~ 38980678 (-)
XLOC_034953 CR356225.1 coding upstream 344107 39136650 ~ 39136774 (-)
XLOC_034954 chrm4a coding upstream 388333 39180876 ~ 39203799 (-)
XLOC_034942 BX957297.2 non-coding downstream 136526 38649588 ~ 38651305 (-)
XLOC_034938 CR318601.1 non-coding downstream 210576 38573917 ~ 38577255 (-)
XLOC_034937 BX571680.1 non-coding downstream 247398 38539306 ~ 38540433 (-)
XLOC_034934 BX323855.2 non-coding downstream 392763 38357915 ~ 38395068 (-)
XLOC_034955 CABZ01033553.1 non-coding upstream 442452 39234995 ~ 39235112 (-)
XLOC_034958 BX842701.1 non-coding upstream 644841 39437384 ~ 39441050 (-)
XLOC_034962 BX908792.1 non-coding upstream 923169 39715712 ~ 39716073 (-)

Expression


Co-expression Network