XLOC_003536 (rs1a)


Basic Information

Item Value
gene id XLOC_003536
gene name rs1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30244356 ~ 30252098 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006915
acagtaatccagccccTTTAACATCAGTGCGGTGGTCCACCACTCGAAAAATAAACATCATGGAGTACAGACTGCAGAACACGTTACTGTTAGCCATCCTGCTGGTGTCTCAAGGTTTTCTTGGTCTGCAGGCACAAACGGATGGCGAAAGCAACGATACATGGGCTGGAAAATCCTGCAAATGTGATTGCGATGATTCCTCCAGCAAGATGCTTTCCAAGGGTTCATCAAGTTGGCCACAGGAGATGGGCTGCATGCCAGAGTGTCCCTACCATAAACCTCTGGGTTTTGAGGCAGGATCTGTGGCTTCAGATCAGATCAGCTGCTCTAATGAAGACCAGTACACAGGCTGGTTCTCCTCCTGGACGCCAAACAGGGCAAGACTAAATAGCCAAGGATTTGGATGTGCCTGGCTGTCCAAGTTCCAGGACACCAGCCAGTGGCTTCAGATTGACCTGAAGGAGGTGAAAGTGGTTTCTGGTATCCTGACCCAGGGCCGCTGTGACTCTGATGAGTGGGTTACCAAGTACACTATGCAGTACCGCATTAATGACAATCTCAACTGGATCTACTACAAAGACCAAACTGGAAACAACAGGGTGTTCTATGGGAACTCTGACCGCTCTTCCACAGTCCAGAACCTGCTGCGTCCACCAATCGTAGCGCGCTACATCCGTATCCTCCCTCTTGGCTGGCACACTCGCATCGCCATGCGCTTGGAGCTGCTGCTTTGCATGAATAAATGCACCTGAGCTAGCTAATAAGCAAAGCCATTCCTAACTATTTCCTGTACACCATCCATTCATTTCTATCACAACATGCCAAAGTGAATATCACTAGCCAATCTTGTTTTATGTATCATCTGGTATGGATTTCAATcgcttttaattttatttatgtgtttaatttAACGTTCTGCGTCTAACTGGTTGATTATTTGATTATTCACATATTTTTCTTCAGTTCATGGAAATTATTGTTAGATTATGTCATGAGTAAATTacttcatgctttttttttcatgtcattttttttttaaaagtaaaataagtattgctttGGCAAATCAGGTTTGTTTACATCCAATGCATGTTGAAGCCATAATGTTAAACCAGATATTCAATCCGGGTATAGAAATAGGGAGATCCATTGGAGTTGAACTCAGTGTTGTGTTACTGTTTTTCTGTTGTGGTTTGTGACTGTTTTTGCTTGTAATTCCCACTGACCGATTCCTTTTTATATTCATTATGAGCCTGTACTGTTAAACTGTGTTTGTGGCTTACCTGAGAAACAACACAATTGAATAAAGGAAGTCTTTCTCCGTA
>TCONS_00006916
CATCATGGAGTACAGACTGCAGAACACGTTACTGTTAGCCATCCTGCTGGTGTCTCAAGGATGGCGAAAGCAACGATACATGGGCTGGAAAATCCTGCAAATGTGATTGCGATGATTCCTCCAGCAAGATGCTTTCCAAGGGTTCATCAAGTTGGCCACAGGAGATGGGCTGCATGCCAGAGTGTCCCTACCATAAACCTCTGGGTTTTGAGGCAGGATCTGTGGCTTCAGATCAGATCAGCTGCTCTAATGAAGACCAGTACACAGGCTGGTTCTCCTCCTGGACGCCAAACAGGGCAAGACTAAATAGCCAAGGATTTGGATGTGCCTGGCTGTCCAAGTTCCAGGACACCAGCCAGTGGCTTCAGATTGACCTGAAGGAGGTGAAAGTGGTTTCTGGTATCCTGACCCAGGGCCGCTGTGACTCTGATGAGTGGGTTACCAAGTACACTATGCAGTACCGCATTAATGACAATCTCAACTGGATCTACTACAAAGACCAAACTGGAAACAACAGGGTGTTCTATGGGAACTCTGACCGCTCTTCCACAGTCCAGAACCTGCTGCGTCCACCAATCGTAGCGCGCTACATCCGTATCCTCCCTCTTGGCTGGCACACTCGCATCGCCATGCGCTTGGAGCTGCTGCTTTGCATGAATAAATGCACCTGAGCTAGCTAATAAGCAAAGCCATTCCTAACTATTTCCTGTACACC
>TCONS_00006917
AAAACCATCTTGACTATGGAATCTGTGAATTTGTGGTTTTTCCCCTAGATGTGCCTGGCTGTCCAAGTTCCAGGACACCAGCCAGTGGCTTCAGATTGACCTGAAGGAGGTGAAAGTGGTTTCTGGTATCCTGACCCAGGGCCGCTGTGACTCTGATGAGTGGGTTACCAAGTACACTATGCAGTACCGCATTAATGACAATCTCAACTGGATCTACTACAAAGACCAAACTGGAAACAACAGGGTGTTCTATGGGAACTCTGACCGCTCTTCCACAGTCCAGAACCTGCTGCGTCCACCAATCGTAGCGCGCTACATCCGTATCCTCCCTCTTGGCTGGCACACTCGCATCGCCATGCGCTTGGAGCTGCTGCTTTGCATGAATAAATGCACCTGAGCTAGCTAATAAGCAAAGCCATTCCTAACTATTTCCTGTACACCATCCATTCATTTCTATCACAACATGCCAAAGTGAATATCACTAGCCAATCTTGTTTTATGTATCATCTGGTATGGATTTCAATcgcttttaattttatttatgtgtttaatttAACGTTCTGCGTCTAACTGGTTGATTATTTGATTATTCACATATTTTTCTTCAGTTCATGGAAATTATTGTTAGATTATGTCATGAGTAAATTacttcatgctttttttttcatgtcattttttttttaaaagtaaaataagtattgctttGGCAAATCAGGTTTGTTTACATCCAATGCATGTTGAAGCCATAATGTTAAACCAGATATTCAATCCGGGTATAGAAATAGGGAGATCCATTGGAGTTGAACTC

Function

symbol description
rs1a Is expressed in brain and visual system. Human ortholog(s) of this gene implicated in X-linked juvenile retinoschisis 1 and retinoschisis. Orthologous to human RS1 (retinoschisin 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-171 Is expressed in brain and visual system. Human ortholog(s) of this gene implicated in X-linked juvenile retinoschisis 1 and retinoschisis. Orthologous to human RS1 (retinoschisin 1).

Ensembl:

ensembl_id ENSDARG00000027236

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006915 False 1325 mRNA 0.43 6 30244356 30252098
TCONS_00006916 False 715 mRNA 0.50 5 30244411 30251569
TCONS_00006917 True 808 lncRNA 0.40 2 30250051 30251936

Neighbor

gene id symbol gene type direction distance location
XLOC_003535 cdkl5 coding upstream 12223 30161168 ~ 30232133 (+)
XLOC_003534 NA coding upstream 140396 30091155 ~ 30103960 (+)
XLOC_003533 nhsb coding upstream 154337 29999414 ~ 30090019 (+)
XLOC_003532 si:ch73-226l13.2 coding upstream 262384 29975830 ~ 29981972 (+)
XLOC_003531 il1fma coding upstream 272202 29965822 ~ 29972154 (+)
XLOC_003537 NA coding downstream 842 30252940 ~ 30253557 (+)
XLOC_003538 ppef1 coding downstream 1870 30253968 ~ 30280958 (+)
XLOC_003539 si:dkey-163f14.6 coding downstream 30043 30282141 ~ 30294085 (+)
XLOC_003540 ugt1b7 coding downstream 43484 30295582 ~ 30330015 (+)
XLOC_003541 NA coding downstream 46605 30298703 ~ 30300054 (+)
XLOC_003369 CR854846.2 misc upstream 14121274 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 17532360 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 17550093 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 17558757 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 17564328 12679732 ~ 12680028 (+)
XLOC_003530 NA non-coding upstream 337527 29905248 ~ 29906829 (+)
XLOC_003524 NA non-coding upstream 653160 29590873 ~ 29591196 (+)
XLOC_003523 BX548000.1 non-coding upstream 672828 29566746 ~ 29571528 (+)
XLOC_003521 CR450796.1 non-coding upstream 892135 29352101 ~ 29352221 (+)
XLOC_003550 CR855274.1 non-coding downstream 722673 30974771 ~ 30974892 (+)
XLOC_003551 CR855274.2 non-coding downstream 795756 31047854 ~ 31055288 (+)
XLOC_003554 NA non-coding downstream 952888 31204986 ~ 31212769 (+)

Expression


Co-expression Network