XLOC_000354 (zc3h13)


Basic Information

Item Value
gene id XLOC_000354
gene name zc3h13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29766725 ~ 29797907 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000605
GTTTGCGCTGTCTTGCCAGCATCATGACGGCGGCTAAGGGGAAGACCGCTTTGCAAGACTTTTGCATGTGATTAGGAGGTTATCCCCAATAGTCTGTGAAACTGGACTTGACGCATCAATCATATTCGGccCTGCAGAATGTCCAAGATCAGGCGGAAGGTTACAGTGGAGAATTCGAAGACCATATCGGACAGCAGCAGTAGCACGACCACCCCCTCCCGCAGGCCCAGTGTGTTTGAGAGACTCGGGCCCAGCACGGCCAGTAATGCAGCAGAGACTCATTGTAGAAACTGGTTAAAGACTGGGAACTGTAGTTACGGTAACACGTGTCGATACACACATGGAACCCCATCTCGAGGAAAAGGCTTCTCTGGAACGTTCAATAGgTCAGCCGAGAGGCCCACTGGGGATCTCCGGGAGAGGATGAAGAATAAGAGACAGGATGTAGATGGTGACGCTCCAAAAAGAGACGCAGACGAGCCCACTTCACCCACAACCAGACAGCGAGATTCATCCCGAGGCAGACATAGAGAAAAGGAGGATATTAAAATCACAAAAGAACGCACTCCAGCTAGTGAGGAGGAAACAGCAGATTGGGAAGCCAGTCGTGAAGATTCTGACAACGGTGATTACGATTACGAGTTATCTCTTGAAATGAAGAGACAGAAGATTCAGCGGGAGCTGATGAAGCTGGAGCAGGAGAACATGGACAAACGAGAAGAAATCATCATCAAGAAAGAAGAATCGGTCTCCAAAACCAGGACCGGCAGTAGTTCTAAAGACAGGGCTTCTCCTGAGCACACCAGCTCTAAAGGATCCCCATCATCTCGTAAATCTAGCGGCTCACCCAAACACAGAGGCGGGAAAGGTGGGAACCCCAGCAAGAAAGAGAAGAAGTCCTCCACTTCCTCAGTTATTTCCTCACCAGTGTCTGACCAGACGAGAGCAGAGGAGACTGACAGCAGgtcATCTAAGAGTGGCCATGGTAAAAGAAAAGGGCCACGGACGCCCAGTCCTCCACCCCCAGTCCCTGTGGAGAACCCAGTGGTtgggaaaaaacacaaaaacaaacacaagaacAAGGATAAATCTGAGGACAAAACTAAAGAAGGCAAAGAAAGAGGACGAGATGCAGAGAAGcacaaagagaaaaaagaaaagcgcAGGGATCGTTCAGACAGTTCCCATAAAGCCAAACGCTCAATGACCTCAGAAGAACGATCTGGAAGTCTCTCCCCACCTTCCAGGGAAGCATCTCCACCAGCCAGAAGGAAGTCATCATCTCCCAAACCCTCCTCTAAACAAGCCTCACAGCATAGGTCTAGAACTCCACCCCGTCACCGCCGCAGTACTTCCCCTTCCTCCAGACAACAGCAGTCCCCATCTTCACAGTCAGGCTCTTCAGCCCAGAGACACTCCCCATCCCCTCGCCACAGACGAAGTTCCATCACCCCCTCAGCCTCACCCCCTCCCACTCAATCCTCACGCCGCTCTCGCTCATCCATCACCCCCCAGAGGGACCCATCCCCAGCATCTGCCCCTCGCAGGTCCAGCCCCAGTGCCTCTCACCGCTCACAGGGCAGGGAGAGAGAGCGGGAGCGGGAGAGGGACAGGGACAGGGGAAGAGCAGAGCAAGAAAGGAGTCCAGCAGTCCAGGAGAGACGGCATGAGCGCAGAGATGagaGTCGTGGGAAGCGTGAGAAAGACAGCAGTCGGGATGAGCGAGACTATGATATCGTGCAGAGTTCTTCTCGAGAGGAGCGTGATTGCAGGGACAGCCGAGACCGGCGTGGAGAACGGGACAGACGAGATGTCCGTGAAGAACGCCAGCATCGTGGGGATGTCAAAGACACTCGAGATGCCCGTGCAGCAGAGACGCGAGAACGCTCGGGACGAGAACCACTGGAGCACAGAGAGAGAGACCGGGATAGGGAAAGAGAAagggagagggaaagagagagagaaaggactgAAATGCATAGAAAGGAGGAAACGATGACCCAGGAAGAAAGGAGTTATGGAAGAGGACACGGAAGGGAGGATATGAGGAATGACGCTAGAACGGACAATAGGAATGAATCTCGAGTTGAAAGAACAGGCAGAGGGAGGGGTCACGGATCAGATGTCACAGAAAAAGCTCGTGGTAGTAGAGCATCACAGGCTGACAATAGCAGTGCTAGTGGACACGACAGCTGGGAGTCACGTAGCAGTGGTCTGAGAGAGAGGAGCACAGAGAGGAACACTGATCGCGATCGCTATGATGACCGACCGAGAGGAGAGCAGCCCAGAGATGAACGACGGGGAGCACATAATGAGAGAGATCGCCGTGACAACAGAGAACGAGAACAAAGAGCGCCCTCTCCTGTCCGCCAGCAAAACCGTGGCGAGGATCTGGAGCGTGAAGAGAGAAGAGATGATCGTCGGAATGACAGAGGGGATGACAGACGAGATGATCGTACCCGTGAGAGGGAGAAGGAGAgggatagagaaagagagagggaacgGGAAagggagaaggagagagagagggagaaagagcgGGAAAGAGAGGCTGAAAGAGAACGCGAGAGAaccagggagagagagagggaaagggaaCGAGAGAgggaggagagagaaagagagagggaggagCGGGAAAGGGAGAGAGAAGAGCGGGAGAGGGAAAGGGAACGAGAGAGGAAGGAGAGGGAACGGGAAAGGGAGCAAAGAGAAAGGGAAAGGCAGCGGGAGTGGGATGAAAGAGAGAAAGGAAGAGAGGAGAGGCGGGAAAGAAGAGATGAGTCAAGAGAAGACCGCCCTCCCCGAGATGCTCATGAAGACAGAAAGAACATCCGTAAGAGACATCGTGCTGAGAACACTCCCAGTCCAAGGCCATCTCCTAAAAGAGCGCGAGATGTGAGCCCTCCAGACAGTGATGGTTACAACAGCACTGAGGAGAAAAGTGATAAGCATCGTCTGCTGAGTCAGGTGGTTCGTCCTCAGGAGACCGCTCGCTCGCCTGTCCGCTCCTTTACTGATGAAAAACACAGTCGCTGGAAGGATGAAGATCGTCGCGTGGATAAAAAAGATGTCCGTGGTCGACACGAGGAGGTGGATTCCCGTGGCGAGAGAGCAGGAAGAGCAGCAGAGCGTCGTGGAGAACACGCTTCAGATGTTTCTGTTACGGGAGTCCCTGAATCTAGGAGGGGAAAAGAGCAGAGAGACCTCCCTTCTACTGCCCTGACGCCTCCCATGGAGGAAAGGGATGCTTTGTCAGCGGTCCATGAGGAGACcaagaaaaagacaaaaactcaaaaGAAAAATATGAAGAAGAATCGTAAAGAGGATGACGGGGTATCTGGAGGAGGTGATCGTAGTAACCCTGAACCCCCAATTTCTTCCACTGTGGCTGAAGCCCCTCCGGCTCTCCTCTCTCCTCGCAAGACACCCAAGAAGAAAGCCTTAGAAAGAAAGCGCAAGCGCTCACGAGGTGCTGAGTCCGATGTTTCCGAGGATGAACTGGTCACTCAACAGCCCCTTAGTAAGAGGCGCCGAGGCCCACGTACACCTCCGCCAATCAATAAGGATGACCTTCCCTCCCAGAGGGCTTTAACAGCTGGACAGAGTTCTCTCCCAGTAAAATTAGATGCCAACTTCAGTGACTGGTCTGATGAGGATGTACCGGAGCGTGGTGAGACCTCCACTGCCTCCATGCCATCTGATAGGCCTCCAGAAAGGCTGCCACCTAGAAGGGGAGCACGTGGTGGTGGCCGGGACCGTACAGACCCTCCTATTGCACCGCTGCTCCCTGATCCTCCTATGCTTATGCAGTCTCTTCCTTTGCAACCGTTACTGCCGCAACACATGCTGCGTAAACCGCAGCAAGCAGacatgcagcagcagcagcgcagCAGCAGCATGGGCAGTAACCAAAGCCGGGCATCTTCAAGAAGACTGCGCTCGCCTTCTAACGAGTCGGCTCACCGTGATGACGGGCCTCAGGGGATGAGGTCCCGCAGAGGACTCCTGCAAGGGGGCAATTCCAGAGAGCGAGAccgagagagagaaagggaacgGGAGAGGGAACGAGAGAGGGACAGAGACAGGGAGAGGGTCGTGGCTAATGAACAGATGGTGGGAGAGAGGAAGTCAAGGATCGATCAGCTTCGCAGAGGAGAACCCAGTCGGAGTACTTCCTCAGACCGACAGGACTCCCGAAGTCATAGTTCTCGTCGCAGTTCACCAGAGTCTGAGCGTCAGGCTCGCTCCAGAGCCGGATCCTATGACAGCCGTGAGCGTGACCGGGAAAGAGATCGTGATCCATTAGATCGAGAGCGTGAGAAAAATCGTCAGCTGCAAAATCAGCAATCCCAACAGCGAGAACCAGAGGCCCGTGAGTGGGGCGGACGCGGCAGAGAGCCGCTCCTCCGTGGAAACCGGGAGCCAATTAGAGAAAGAGACCTGAGGGAGATGCGTGAAAGAGAGCGACTCTTACCTGAAGGGCTGCTAGCACACGAACGAATGGATCGTGAGCGTGGTGAAAGAGACCGAGAGCGTGATCGGGACAGAATGCTTCCATTTGACCTGCAGACGCATAGAGACTCAAAGAGCAGAGCTGAAATGAAGATGGACAGGGCTGAATATGAGCCCCTACTGCCCAGAGAAGTCCTCAAGGATGTTGAAAAACCAGCAGACAACTCACATCTGCAAGGGGAAGCATCTGAGCCAGAGAAAATGGATAGTCTTGATGAAGAGGAAGATGGAAAAGCAGATGATGCACAGTCTGTTGTGTCAGGTGGTGAGGAGTATGAGCCAATCAGTGACGATGAACTTGATGAGATTCTGGCAGACAGTCAGAAGAGGGACGAGCAGCAAGATGATGAAAAGACTTCTGGGCCTCTAGATGTGATTGATGTAGACTGGTCCAGCTTGATGCCCAAGCAAAAACAGGAGCCCAGAACTCCTGGAGCTGCTCTGCTCCGATTCACTCCAGGGGCTGTACTCCTCAGAGCAGGAGTGTCCAGACGTTTAGCTGGGCCTCAGCTCCTTGCCAGAATTAAAGAAGTGTGTGCCAGAGAGATTGAAGACCCTAAAGATGCTGATAAACTCCTAGAGCATGATCTGGGTGCTCTGAATATGGCAGCATACAACAGAAGAATGGAAAGGGCCAGTCTACTGAGGAGCTTGGGTCCTTGCTGCAAGGCACTGTGTGCTCGGCGAGACATTGCCATACGTAGACAGCTCCTGAAAAATGATAAGGGCACCACTAAGCAGATCTATACAAGCGCTCCAGTGGTGGACAATGAACTTGTGCAACTGAGTTTGCGactctttaaaaagaaaatggcTTCTACTCAGTCAAGCGGACAGGACAAGACTGATTCAGCTTCTGCAGCTCAACAGCTGAATACACCAACAGAGATGTGCGTCTCTTGAGCACACTTAGTGAGTACAGTCTGAAAGAACTGATCTCAGATCATCGTTAACCCATACTTTTCATCAGTTATTGTAACACTGAAACTGTTTTGAAGTCAGTGCTGATGGAGGATTGCTGCCCTAAACCTGACCAGATCACAGATCCATAGAGACTGGAAAACACTAGCCTGTGGAAATGCTGTCTTAAGGTTTCATGACCTTTGAACTTTGACTCAGAAATGTGATAATTATGTACTGCATAAAAACTGTGTCATTAACATTTGTTTTAGAGACTTTTTGTAATGCCTGATGTGTGTGAATGACGGTTGCTTGTGGGCTATACAATGGGTACTGAAGATGTACAATAAAATGACTGTATTTGTTCTGTGCATCTGACTTGCGGTCCCCTTGTTTGTcagttttgttttgaaatgttttgtgATCAGTCTGCTTCAGCACTCTTTGTTTGCAGTActactttgttttattaaaacatgattcaagaagaaaatgtgttttttttatcaacCATATTGCttgttttatgaaataaaatattttatacagaG

Function

symbol description
zc3h13 Predicted to enable metal ion binding activity. Orthologous to human ZC3H13 (zinc finger CCCH-type containing 13).

GO:

id name namespace
GO:0080009 mRNA methylation biological_process
GO:0036396 RNA N6-methyladenosine methyltransferase complex cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040426-1619 Predicted to enable metal ion binding activity. Orthologous to human ZC3H13 (zinc finger CCCH-type containing 13).

Ensembl:

ensembl_id ENSDARG00000037177

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000605 True 5966 mRNA 0.52 21 29766725 29797907

Neighbor

gene id symbol gene type direction distance location
XLOC_000353 cpb2 coding upstream 2665 29759678 ~ 29764060 (+)
XLOC_000352 raph1b coding upstream 23085 29664336 ~ 29743640 (+)
XLOC_000351 si:dkey-228l14.1 coding upstream 247723 29515160 ~ 29519002 (+)
XLOC_000350 CR774189.1 coding upstream 258252 29507647 ~ 29508473 (+)
XLOC_000349 NA coding upstream 265691 29500308 ~ 29501034 (+)
XLOC_000355 tm9sf2 coding downstream 233 29798140 ~ 29824375 (+)
XLOC_000356 zic2b coding downstream 33852 29831759 ~ 29860895 (+)
XLOC_000357 pcca coding downstream 64167 29862074 ~ 29953746 (+)
XLOC_000358 NA coding downstream 276728 30074635 ~ 30079529 (+)
XLOC_000359 vps8 coding downstream 285671 30083578 ~ 30310689 (+)
XLOC_000348 CT573186.2 non-coding upstream 313992 29451465 ~ 29452733 (+)
XLOC_000347 CT573186.1 non-coding upstream 321006 29444452 ~ 29445719 (+)
XLOC_000346 BX908780.2 non-coding upstream 454166 29311527 ~ 29312559 (+)
XLOC_000360 dre-mir-740 non-coding downstream 368046 30165953 ~ 30166065 (+)
XLOC_000361 BX255890.2 non-coding downstream 429484 30227391 ~ 30227505 (+)
XLOC_000365 BX548015.2 non-coding downstream 1056062 30853969 ~ 30859524 (+)
XLOC_000369 NA non-coding downstream 1343212 31141119 ~ 31144527 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_00864358_00887502 ZC3H13 coding CI01000049 null 864358 ~ 887845 (+)