XLOC_000355 (tm9sf2)


Basic Information

Item Value
gene id XLOC_000355
gene name tm9sf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29798140 ~ 29824375 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000606
GTCAGATGCTGCTACGCAGGCAGCGGTTACGCTAACGCTTGTGCTTAGACATCACCAATGTCTAAATTTTGACACCCATATCTACATTTCACGCATGTAAATACATCTACAGATTACTTAATTAGTCGGTCGTGGCAAAATGGTCGAGTTCCACCGTGTCCGTGTTGTATTTGTGTCGCTTTTCGTGTGCGGGTTGTTGCGGGACGCGTTGAGTTTCTATCTTCCTGGTTTGGCCCCGGTCAGCTTCTGTAAGAAAGAAGCGGGCGACAAAAACAGCGAAGTCCCAGACTGCAAGTCAACCATTGAGCTCTTTGTGAACAGGCTGGATTCTGTGGAGTCAGTTTTACCCTATGAATATACTGCGTTTGATTTTTGTGCTGAGCAACATGAGAAGCGACCATCTGAGAACTTGGGCCAGGTATTGTTTGGTGAGAGAATTGAGCTGTCCCCATATAAGTTTTTGTTCCAGAATGATTTGCAATGCCAGTCCGTCTGCGTCAAGTCTTACAAAACACAAGATGCAGGTGATAAAGCCAAATTGGATTTCCTCAAGAAGGGAATGCTCCTCAATTACCAACACCACTGGATTGTTGATAATATGCCGGTGACCTGGTGTTACGATGTGGAGGACAATCAGAAGTTCTGTAATCCTGGCTTTCCCATTGGTTGCTATGTCACAGATACAGGACGGGCCAAAGATGCCTGTGTGGTCAATGCTGACTTCAATGACAAAGACACCTTCTACATCTTCAACCATGTGGACATAACAATTTTCTACCACAATGTGGAAAATGAGGTTGCTGGTGCCAGACTGGTTGCAGCTAAGTTAGAGCCCAAAAGctTTAAGCAGTCCAACGTAGACAAACCAGACTGCACAGGACCTCCCATGAGCCTGAGCAACAAGTTCAATGGAGAAATCAGGATACCCTACACTTACTCTGTCAAGTTTCTGGAGGATAAGACAATTCGCTGGGCCTCCAGATGGGATTACATTCTTGAGTCTAtgccacacacaaacattcagtGGTTCAGTATCATGAACTCTCTGGTCATCGTACTCTTCCTCTCTGGAATGGTCGCTATGATCATGCTTCGAACACTTCATAAAGATATCGCTCGATACAACCAGATGGACTCTGTGGAGGATGCCCAGGAGGAATTTGGCTGGAAGCTGGTTCACGGAGATGTCTTCAGGCCGCCTAGGAAAGGCATGCTGCTGTCTGTGTTCCTTGGTTCTGGGACTCAGATCTTCATCATGACCTTTGTCACTCTATTTTTTGCCTGTTTGGGTTTCCTGTCACCTGCCAATCGCGGGGCTCTGATGACGTGTGCAGTGGTGCTGTGGGTGCTCTTGGGTACTCCAGCTGGTTATGTGGCTGCTCGCTACTACAAATCTTTCGGTGGTGAGAAGTGGAAGACCAATGTTCTGTTGACAGCTTTTCTCTGTCCAGGAGTGGTGTTTGCAGATTTCTTTGTGATGAATCTCATTTTGTGGGGTGAGGGTTCATCCGCTGCCATGCCCTTTGGCACTCTGGTTGCCATCCTGGCTCTGTGGTTTTGCATATCAGTGCCCCTCACCTTTATCGGCGCGTACTTCGGTTTCAAGAAAAGCGCCATTGAACATCCTGTGCGGACCAACCAGATTCCAAGACAGATTCCAGAGCAGTCCTTCTATACTAAACCTCTTCCTGGCATTGTCATGGGAGGAATCCTGCCATTCGGATGCATCTTCATCCAGCTGTTTTTCATTCTCAACAGCATCTGGTCTCACCAGATGTACTACATGTTTGGCTTTCTCTTCCTGGTCTTTATCATCTTGGTCATCACCTGCTCTGAGGCCACCATTCTCCTCTGCTACTTCCACCTGTGTGCTgagGACTATCACTGGCAGTGGCGTTCTTTCCTGACCAGCGGATTCACAGCTGTTTATTTCCTGGTCTATGCCATCCATTACTTCTTCTCCAAGCTGCAGATCAGCGGACTTGCCAGCACCATTCTTTACTTTGGTTACACCATGATCATGGCGCTCATCTTCTTCCTCTTCACAGGCACCATTGGATTCTTCGCTTGCTTTTGGTTTGTCACCAAGATCTACAGCGTGGTCAAAGTGGATTAAATGAAAGCAATCTCAGATGAGACTGAACTTCTCTTCTCCGCCCAATGTGAGATCCCAGAGGGAGGGACCTGAGCGCTGTTTATCTTCTGTTGCCACGGCAACCCTTCTTTACATCAGCAACTCTAAATCtacaaatttaatttactttgctgtgtgtgcgtgtgggcgTGTGTACATTAGTAGTGCATATTCAACCAATTGGAAGAACTCTACACATCTGCTTCTTTAGTTGGAACAGAATACAGCAGATACACACATTGACCCTTATAACTCACATGGGTATTTACGATTTGGAGTTGtcatttgtaaatattacttacttTATTCTTTGCTAACGTTCAAATGGAAGGGTAATGCATAAATCGCAGAGAAAACTAGCTCCAGTCATTGAATCTTCAAGGTGTCGGAAGTATGATTTtgtaaatatcttcttttgtttcttAAATTCATCAAGCAAGAAAGTAGAAGTTGAAAGCCGAAGGACTTCATTCTTTGGGTTGATTTAAGAGTGAGGCtgtgtgaattttctttttttccatcttGTTGATACTGTACAATTACTGCTTGCGTATACTTGTGTATAACCAGTGGGGGGAATGtctatttaacttttttgtttggtcattttttctttgttttctgttTATGCCTCAACACTTTGTGTGCCTCATTATCACAGAGGAAAATCAAGACTGGTAAAAACTGATTTGGGAAGATGTGAAGTGCCCCGTCCATACACAGGGGTAACTGGAGTGAAAtgatttcttttgtttgtatATATGCACAGCGTTAAACGTGTGTCCAGCATAAACTACATTAGCTTGGTTGGCTACTCGGTTTTGGTTTTTGTCTTCTCTGATTTTGAGGTAATGAGATtacaagaaaaatgaaaaaaaaaaattattagaaataaaaccttgtcttcaaaaatataa
>TCONS_00000607
TACGATGTGGAGGACAATCAGAAGTTCTGTAATCCTGGCTTTCCCATTGGTTGCTATGTCACAGATACAGGACGGGCCAAAGATGCCTGTGTGGTCAATGCTGACTTCAATGACAAAGACACCTTCTACATCTTCAACCATGTGGACATAACAATTTTCTACCACAATGTGGAAAATGAGGTTGCTGGTGCCAGACTGGTTGCAGCTAAGTTAGAGCCCAAAAGctTTAAGCAGTCCAACGTAGACAAACCAGACTGCACAGGACCTCCCATGAGCCTGAGCAACAAGTTCAATGGAGAAATCAGGATACCCTACACTTACTCTGTCAAGTTTCTGGAGGATAAGACAATTCGCTGGGCCTCCAGATGGGATTACATTCTTGAGTCTAtgccacacacaaacattcagtGGTTCAGTATCATGAACTCTCTGGTCATCGTACTCTTCCTCTCTGGAATGGTCGCTATGATCATGCTTCGAACACTTCATAAAGATATCGCTCGATACAACCAGATGGACTCTGTGGTGAGTTCCACTCTACAAGATTACATCATAATCTTATATGatctgtatatatgtttgtgtgacTGTTGTAGTTTATGCATTTTAGTACAGCCAACATTTTGTCTTTCAGGTGATTGATCATATTTATGTATACATGTGTTTGAGTCTGTCTGTGGTTAATCAGCATAATGGCAAAAGAATA

Function

symbol description
tm9sf2 Predicted to be involved in protein localization to membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human TM9SF2 (transmembrane 9 superfamily member 2).

GO:

id name namespace
GO:0072657 protein localization to membrane biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6302 Predicted to be involved in protein localization to membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human TM9SF2 (transmembrane 9 superfamily member 2).

Ensembl:

ensembl_id ENSDARG00000003866

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000606 False 3051 mRNA 0.44 17 29798140 29824375
TCONS_00000607 True 706 lncRNA 0.42 5 29806494 29809496

Neighbor

gene id symbol gene type direction distance location
XLOC_000354 zc3h13 coding upstream 233 29766725 ~ 29797907 (+)
XLOC_000353 cpb2 coding upstream 34080 29759678 ~ 29764060 (+)
XLOC_000352 raph1b coding upstream 54500 29664336 ~ 29743640 (+)
XLOC_000351 si:dkey-228l14.1 coding upstream 279138 29515160 ~ 29519002 (+)
XLOC_000350 CR774189.1 coding upstream 289667 29507647 ~ 29508473 (+)
XLOC_000356 zic2b coding downstream 7384 29831759 ~ 29860895 (+)
XLOC_000357 pcca coding downstream 37699 29862074 ~ 29953746 (+)
XLOC_000358 NA coding downstream 250260 30074635 ~ 30079529 (+)
XLOC_000359 vps8 coding downstream 259203 30083578 ~ 30310689 (+)
XLOC_000360 dre-mir-740 coding downstream 341578 30165953 ~ 30166065 (+)
XLOC_000349 NA non-coding upstream 297106 29500308 ~ 29501034 (+)
XLOC_000348 CT573186.2 non-coding upstream 345407 29451465 ~ 29452733 (+)
XLOC_000347 CT573186.1 non-coding upstream 352421 29444452 ~ 29445719 (+)
XLOC_000346 BX908780.2 non-coding upstream 485581 29311527 ~ 29312559 (+)
XLOC_000361 BX255890.2 non-coding downstream 403016 30227391 ~ 30227505 (+)
XLOC_000365 BX548015.2 non-coding downstream 1029594 30853969 ~ 30859524 (+)
XLOC_000369 NA non-coding downstream 1316744 31141119 ~ 31144527 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location