XLOC_003542 (tmem178)


Basic Information

Item Value
gene id XLOC_003542
gene name tmem178
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30513656 ~ 30531106 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006936
GtcaccaccaccatcatcatcatcatcaccatcataaCAGTTCAGTCGCGCGCTCGCCTGTCTCCTTGACACACCCTTAGCTATTGTTGGcacagtaggcgcgcgacaacctTGACATTCCCACACGCGCGTTCAGTTGTACGGAGAAATTTTGTTCTGCGTGGATGCAAAACCTCCTCGGGAAGGAGTTAAAGACGGACAAGCGGCTACACTGCGGCTAAAAGAAGATGCACAGACGCCGAAGGCAGTGCAGGTAAACACGCACGCACGGCCATCGCGCATCCCCATATAGATGCCCACGGCACCGCACGCGCAGACACACTCCGCTCATCCACCTGTAATGACAGATCGCTGCCCAAAGCGGTGCATTGTCCCAGGAAACGGCGAGGAAAGTCCGCTTCGCGTGAGAGATGACTGAGTGAGTTGCGCGGATGTTGGAGACATGGAGAAACGGGCTCTTGTAACGGCGATCAGCTTGTCCATGAGCCTGCTCGCGCTCATGCTGCTGGTCACTGCGATCTTCACCGATCACTGGTACGAGACCGACACCAGGAGACACAAGGAGAACTGCGACCAGTACGGGTCCGAGTCCAACGACCAGAAGAACAGGGAGATGCCCATCTATCACCTGCCTCTGGTGGACAGCGGGAACGCGAAGCGCAACCTGGCGCTCATGAAGCCCATTCACGTTGGGAGTCGAGAGGAGGAACTGTTGGAGAACTGGAGGGCGATTTTGGGCATGGGCATTTTGGAGACGGAGTGCGGGCGCCCGCTTTTCTCCACCTATTCGGGACTATGGAGGAAATGCTACTTCCAGGGAATGGACAGGGATATTGACAAACTCATTTTGAAGGGTATTGCAGAGCGATGCACATCTGTCAAGTACCATTTCTCCCAACCCATCAGACTCAGGAACATCCCTCTCAACCTGACGAGGACCATACAGCAGGACGAGTGGCACCTCTTACatctGCGGCGCATCACGGCAGGGTTTTTGGGCATGGCAGCAGCCGTAATGCTGTGTGGAAGCATCGTGGCCGCGGTTGGATTTTTCTGGGAGGAGAGCCTCACTCAGCATGTGTCTGGACTCCTGTTCCTTATGGCAGGAATCTTCTGCACGATCTCACTGTGCACATATGCCGCCAGTGTCTCGTACGACCTCTCCAGAAACCCTCCCTTCATTTATGGCCTGCCCAGTGACGTGGACCACAGCTACGGATGGTCCATCTTCTGCGCGTGGGTCAGTCTGGGGCTAACAGTGGCGTCTGGCTGCATCTGCACAACATATCCCTTCCTGAGCCGCACAAAGGCTCTTCGCTCCAAAACGGCGCGGGAGTCTTCGGTATGAGCGCCTCCTGGTGGCCTGGAGGACATTAATCAGCACTCGGCGCTTTAGGAAAACGATTTCAAGTGGACTTCATGACTTATGGAGTGGCGTTGACGTTATACAGAGTGAAAGACAAGACTGTTGCATTTCCTTACAAATcaaacacataataaaaaaataaaagaaaacacaaacacacaaaaacaaatatacatgTATGAAAGTAACGAACAAAAAAATCTATTGATTTGACAATGATATGTGTACGTTTGTGGGTTGTTGTGATGCAATCATCCTCTGGATCAGGTGATACTTAGGATCTGAGCCacagttttcttttgttttgtacgCAAACCGTCTGAAATTCAAACGATTACGctcagtgttatttttttatgtgattaAATCGTAGGTTTTGGTTCGCAAACAGATAGGAGTCGACTCAAATAGTCAAATCCAGTCAGGGATGAATAGGGCGCTTCATGTCACCACATCAGACAAATGTATAAAGGCATGATTGCATATATATCACCTTTGGGTAACAGCTGGAGGCCGATATTCAAAAGGATTGAGAAATCAAAGAGACACGAGGAGATGTAAGATGTGCATATATGCAAAATTTCCTGATTGGATGAAGTCGAACGCGGCTCTCGCTATAGCAGTGCAATCTTATTATGGCCGCATGCTTGAAGTGGATGCTCTCGAATCAACCAGCCTCGCTCCTGACGTCATGCCATTGTTCAAAATACCAGTTCTGAACGAATATAAAGCGACGGGGATTATATTAACTGCTGGATATTGTTTGcccccccacccaaaaaaaacTGAGCCAAAACAGTGACATATTACTGAAAACATGTACCGTTCGCCTcgaaatttctgttgtgttcctGAAAGTGTATTgtaaatcaaaataatataatgatGAAATAAAGGTCTATGAAGAAACCATTTCGTGAGAA

Function

symbol description
tmem178 Predicted to be involved in negative regulation of osteoclast differentiation and regulation of cytosolic calcium ion concentration. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in lateral line ganglion. Orthologous to human TMEM178A (transmembrane protein 178A).

GO:

id name namespace
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0045671 negative regulation of osteoclast differentiation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-756 Predicted to be involved in negative regulation of osteoclast differentiation and regulation of cytosolic calcium ion concentration. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in lateral line ganglion. Orthologous to human TMEM178A (transmembrane protein 178A).

Ensembl:

ensembl_id ENSDARG00000020758

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006936 True 2289 mRNA 0.49 4 30513656 30531106

Neighbor

gene id symbol gene type direction distance location
XLOC_003540 ugt1b7 coding upstream 183641 30295582 ~ 30330015 (+)
XLOC_003541 NA coding upstream 213602 30298703 ~ 30300054 (+)
XLOC_003539 si:dkey-163f14.6 coding upstream 219571 30282141 ~ 30294085 (+)
XLOC_003538 ppef1 coding upstream 232698 30253968 ~ 30280958 (+)
XLOC_003537 NA coding upstream 260099 30252940 ~ 30253557 (+)
XLOC_003543 CR556713.1 coding downstream 83379 30614485 ~ 30636146 (+)
XLOC_003544 pgap4 coding downstream 105245 30636351 ~ 30642646 (+)
XLOC_003545 tpcn3 coding downstream 116439 30647545 ~ 30661754 (+)
XLOC_003546 ttbk1a coding downstream 132194 30663300 ~ 30728241 (+)
XLOC_003547 slc22a7a coding downstream 198639 30729745 ~ 30742966 (+)
XLOC_003369 CR854846.2 misc upstream 14390574 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 17801660 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 17819393 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 17828057 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 17833628 12679732 ~ 12680028 (+)
XLOC_003534 NA non-coding upstream 409696 30091155 ~ 30103960 (+)
XLOC_003530 NA non-coding upstream 606827 29905248 ~ 29906829 (+)
XLOC_003524 NA non-coding upstream 922460 29590873 ~ 29591196 (+)
XLOC_003550 CR855274.1 non-coding downstream 443665 30974771 ~ 30974892 (+)
XLOC_003551 CR855274.2 non-coding downstream 516748 31047854 ~ 31055288 (+)
XLOC_003554 NA non-coding downstream 673880 31204986 ~ 31212769 (+)
XLOC_003555 NA non-coding downstream 674377 31205483 ~ 31209887 (+)
XLOC_003557 NA non-coding downstream 753878 31284984 ~ 31320539 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location