XLOC_035497 (fut9d)


Basic Information

Item Value
gene id XLOC_035497
gene name fut9d
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13503377 ~ 13505486 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069639
GAAAGCTTTTGGTCAGTCCTTCAAAGTCTGCAAAGTAAAATTTAGCTCCAGTTCACTTTAAAGCAAAAATTCACAAACATCCTTCAATATAAGTGTTAACATCTGGTGTCGGACAGACTGGCTTTACGTGAAATAAAACTGCAAGCATCTCTCAGGGGCTCTTGAAAGGGATCACAGAATGTCCGGCCCAAATTTAAAAGGAGTTTCAGTGCTTCGTCTGGTTACTCTATTGGTGTTTGCAGGACTGGTTTCTCTCACAGTTCTGTATTTCTTATCTTCATATCAAACCAGCTGCTCACTTTCTCTGCCTAAACCACTACAATATATAGACAATTACTTTGGGCAGGACAGCGACTCTCTTACGGATGCAGCAGAAGATAAACCTGTTCTTCTTCTCTGGTTCTGGCCTGAAAATTACTTCTTTGATTTCAGTGACTGTAAAACCATATACAATATTGATGGTTGTCATTTGACCGACAATAGATCACTCTACGACAGTTCAGATGCTGTCCTTATTTTTCACAAAGCCATCAGTCGGGACCTGTCCAACCTTCCTCGGTCTCCTCGTCCTCTGTTCCAGAGGTGGATTTGGTTTCATGTTGAATCACCGACCAACACCATAAAAATACCAGGCCTGGAAAACCTGTTCAATCTTACTCTCAGCTACAGACAGGATGCTGATATTACTGTCCGGCTGCGCTTGAACACCAGAAAAAAAGCAGATGAGCAGTTTGTAATTCCCAAAAAAGACAAACTGGTGTGTTGGATCGTAAGCAACAATGCTGCCTGGACAGGAGTCGGCACAAGGAACGAGTTTTACAAAGAATTCAGCAAGCACATCAAAGTGCATCTGTTCGGAAAGGCTTAcgcaaagtttcttgattataaCGAGTACTATCCAACCTTAGCGAGCTGCAAGTTTTACCTTTCCTTTGAGAACTCCATCCACAAGGACTACATCACGGAGAAGTTAAATGGGCCGCTTGCTGTAGGCACCGTTCCTGTGGTTTTGGGTCCTCCAAGAAAAAACTATGAAGCCTTCGTTCCTGCTGAGTCCTTCATTCATGTCAACGACTTCCCCGATGCAAAGACACTAGCAGAATATCTGCTTCAGCTGGACAAGGATGAAACTGCCTATCGCAGGTTCTTCAATTGGAGGAAACATCTCTCTCCAACCCCTCATTTGATTCAGAAAACACAAGAGTTTATTCTGCCTATCTGCACTGCCTGTGACTATATAGCACGACACAGGCATTATAAAGAGGCTCATGATCTATATGAATGGTATTTTAATTAGCAGAATGTTTCTCAGATTttgttacactctcagaaataaagttatGCAAGCCGTCACTGTGatggtactttttcaaaaggtatGTTTGCCCAATATTTGGTTACATATTAGTAGACATTAGATTTTAGGTACTGATTTAGCTTATCAGTATGGACTCAacgtaccttttgaaaaggtactgccccaatgACAGCTCTCATTTCCTTATCTCTGAGCGATATGAGAAATATGTTCTTTTTGAAAAGgtatgtacctttatttctgagtaaaTGAAGGTACAAGAAATATGTACTTTTTGAAAATTTTAAAAGCTCTTTTACGTATTTCTGGTCTTGTACAAATTTATAATTCATGGAGGGTTTTCATAATCAATAGATGTTAAATAACAGTATAATACAATTTAGGAAAAGTTGTCTCATGGtttagtttgtgtttgttttttaagagaTTGTGAAGTAGCTTTTTAAACCTATTAaccacatatatttttttaaaaatcagtaacATTTGCATGTAttcatattaaatttaaatggtgTTGGTTTACAATGTAgttgtatgtatacatatatattaaatgcATGTGTAATATGCAATTTGCTTGGTGTTTTCCTTgcagaataaataaattcatg
>TCONS_00069640
AGACTGGCTTTACGTGAAATAAAACTGCAAGCATCTCTCAGGGGCTCTTGAAAGGGATCACAGAATGTCCGGCCCAAATTTAAAAGGAGTTTCAGTGCTTCGTCTGGTTACTCTATTGGTGTTTGCAGGACTGGTTTCTCTCACAGTTCTGTATTTCTTATCTTCATATCAAACCAGCTGCTCACTTTCTCTGCCTAAACCACTACAATATATAGACAATTACTTTGGGCAGGACAGCGACTCTCTTACGGATGCAGCAGAAGATAAACCTGTTCTTCTTCTCTGGTTCTGGCCTGAAAATTACTTCTTTGATTTCAGTGACTGTAAAACCATATACAATATTGATGGTTGTCATTTGACCGACAATAGATCACTCTACGACAGTTCAGATGCTGTCCTTATTTTTCACAAAGCCATCAGTCGGGACCTGTCCAACCTTCCTCGGTCTCCTCGTCCTCTGTTCCAGAGGTGGATTTGGTTTCATGTTGAATCACCGACCAACACCATAAAAATACCAGGCCTGGAAAACCTGTTCAATCTTACTCTCAGCTACAGACAGGATGCTGATATTACTGTCCGGCTGCGCTTGAACACCAGAAAAAAAGCAGATGAGCAGTTTGTAATTCCCAAAAAAGACAAACTGGTGTGTTGGATCGTAAGCAACAATGCTGCCTGGACAGGAGTCGGCACAAGGAACGAGTTTTACAAAGAATTCAGCAAGCACATCAAAGTGCATCTGTTCGGAAAGGCTTAcgcaaagtttcttgattataaCGAGTACTATCCAACCTTAGCGAGCTGCAAGTTTTACCTTTCCTTTGAGAACTCCATCCACAAGGACTACATCACGGAGAAGTTAAATGGGCCGCTTGCTGTAGGCACCGTTCCTGTGGTTTTGGGTCCTCCAAGAAAAAACTATGAAGCCTTCGTTCCTGCTGAGTCCTTCATTCATGTCAACGACTTCCCCGATGCAAAGACACTAGCAGAATATCTGCTTCAGCTGGACAAGGATGAAACTGCCTATCGCAGGTTCTTCAATTGGAGGAAACATCTCTCTCCAACCCCTCATTTGATTCAGAAAACACAAGAGTTTATTCTGCCTATCTGCACTGCCTGTGACTATATAGCACGACACAGGCATTATAAAGAGGCTCATGATCTATATGAATGGTATTTTAATTAGCAGAATGTTTCTCAGATTttgttacactctcagaaataaagttatGCAAGCCGTCACTGTGatggtactttttcaaaaggtatGTTTGCCCAATATTTGGTTACATATTAGTAGACATTAGATTTTAGGTACTGATTTAGCTTATCAGTATGGACTCAacgtaccttttgaaaaggtactgccccaatgACAGCTCTCATTTCCTTATCTCTGAGCGATATGAGAAATATGTTCTTTTTGAAAAGgtatgtacctttatttctgaAAAATTTTAAAAGCTCTTTTACGTATTTCTGGTCTTGTACAAATTTATAATTCATGGAGGGTTTTCATAATCAATAGATGTTAAATAACAGTATAATACAATTTAGGAAAAGTTGTCTCATGGtttagtttgtgtttgttttttaagagaTTGTGAAGTAGCTTTTTAAACCTATTAaccacatatatttttttaaaaatcagtaacATTTGCATGTAttcatattaaatttaaatggtgTTGGTTTACAATGTAgttgtatgtatacatatatattaaatgcATGTGTAATATGCAATTTGCTTGGTGTTTTCCTTgcagaataaataaattcatg

Function

symbol description
fut9d Predicted to enable alpha-(1->3)-fucosyltransferase activity. Predicted to be involved in fucosylation. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in epidermis and periderm. Orthologous to human FUT9 (fucosyltransferase 9).

GO:

id name namespace
GO:0036065 fucosylation biological_process
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0046920 alpha-(1->3)-fucosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-15 Predicted to enable alpha-(1->3)-fucosyltransferase activity. Predicted to be involved in fucosylation. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in epidermis and periderm. Orthologous to human FUT9 (fucosyltransferase 9).

Ensembl:

ensembl_id ENSDARG00000028098

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069639 False 1932 mRNA 0.38 2 13503377 13505486
TCONS_00069640 True 1785 mRNA 0.39 3 13503491 13505486

Neighbor

gene id symbol gene type direction distance location
XLOC_035496 jak3 coding upstream 90780 13389115 ~ 13412597 (+)
XLOC_035495 slc5a5 coding upstream 121026 13364950 ~ 13382351 (+)
XLOC_035494 itgb4 coding upstream 343790 13106760 ~ 13159587 (+)
XLOC_035493 sap30bp coding upstream 405185 13064750 ~ 13098192 (+)
XLOC_035492 dram2a coding upstream 514240 12975963 ~ 12989137 (+)
XLOC_035498 NA coding downstream 13036 13518522 ~ 13597892 (+)
XLOC_035499 NA coding downstream 181618 13687104 ~ 13692006 (+)
XLOC_035500 pimr107 coding downstream 189464 13694950 ~ 13696012 (+)
XLOC_035501 lonrf1l coding downstream 195119 13700605 ~ 13788311 (+)
XLOC_035502 NA coding downstream 250527 13756013 ~ 13760915 (+)
XLOC_035489 NA non-coding upstream 440239 12766030 ~ 13063138 (+)
XLOC_035486 CR933523.1 non-coding upstream 1643233 11860028 ~ 11860144 (+)
XLOC_035485 NA non-coding upstream 1691213 11794658 ~ 11812164 (+)
XLOC_035482 NA non-coding upstream 1929905 11567232 ~ 11573472 (+)
XLOC_035479 NA non-coding upstream 2183674 11319434 ~ 11319703 (+)
XLOC_035503 NA non-coding downstream 289495 13794981 ~ 13799369 (+)
XLOC_035505 CT025854.1 non-coding downstream 465931 13971417 ~ 14020139 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_11369406_11370509 NA coding CI01000010 null 11369136 ~ 11371027 (-)