XLOC_035498


Basic Information

Item Value
gene id XLOC_035498
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13518522 ~ 13597892 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072158
gaaatatttgacttttttttttttaagtggaaacTGAAAGTTATTGAATCAATAAACTACTTATATTTATCCCtacacaaaataatacattttagctCACGGTCTGATGataaaattatgaatatatattcaCTAAACATATTAAACTGTGTTTAGCCAATTTATCAAACAGCAGTGAAATATTAGTGTTTGACGAATAAAATCTTGAAGCAAAAATCGCGTGTGCGCGTGCGCGACTGCCCATGAGTGAGACGGCCGTTGGTTTGGAAGGAGCAGATTCAAATTCCAGTGGAGCAACGGCAGAAATCCGAGGAAACATCATATTCGACGGGTTTCCTTCAACAACGTTACGAGTCATCAGAGGAGGAGCCTAGTGAATAAGTGTGAGTGTGAAGCTGTAGGCctggagacccaactgcacgctcagacctgcaAGCTCAGACCTGCACTTCTAGACCCATCGTTTTCTCAGACAGTACCACCTGCTGTTGGGTTGGGGGAGGCGACAGCGACGGAGgcccaactgcacgctcagaccaGCACTTTCTAGCAAGCAGCAACATCAAACATGTGCTGCTTGCCTCCTCTGTCCATTTTCCATCAGTCTACACAGCAAATAAGCAGAGCAGGTTGCACTGAGGTGCTGTTTCTGTTTGCCTCTTGTATCCATATCCATCAGTCTACACAGCAAATAAACAGAGCAGGATACACAGAGGGCCTACGTTCTGAATGATGTTCCCAGTAAAGAGATGTCTACTTCCATCATTGTCTTCTTGACCCT
>TCONS_00069642
CCtacacaaaataatacattttagctCACGGTCTGATGataaaattatgaatatatattcaCTAAACATATTAAACTGTGTTTAGCCAATTTATCAAACAGCAGTGAAATATTAGTGTTTGACGAATAAAATCTTGAAGCAAAAATCGCGTGTGCGCGTGCGCGACTGCCCATGAGTGAGACGGCCGTTGGTTTGGAAGGAGCAGATTCAAATTCCAGTGGAGCAACGGCAGAAATCCGAGGAAACATCATATTCGACGGGTTTCCTTCAACAACGTTACGAGTCATCAGAGGAGGAGCCTAGTGAATAAGTGTGAGTGTGAAGCTGTAGGCctggagacccaactgcacgctcagacctgcaAGCTCAGACCTGCACTTCTAGACCCATCGTTTTCTCAGACAGTACCACCTGCTGTTGGGTTGGGGGAGGCGACAGCGACGGAGgcccaactgcacgctcagaccaGCACTTTCTAGCAAGCAGCAACATCAAACATGCAGAGTCACTGGCCAGCTGTTTGGAACCAGTAATACAGGAAAGTCAGAGAGATCAGAACTGCAAATACCAGTGAAGTTACCAGACAAGGTGCTGTTGTTTCAGTTTGCCTGCTGTATCGATTGTCTACACAGCAAATAAACAGAGCAGTATGCACTGAG
>TCONS_00072159
CGACTGCCCATGAGTGAGACGGCCGTTGGTTTGGAAGGAGCAGATTCAAATTCCAGTGGAGCAACGGCAGAAATCCGAGGAAACATCATATTCGACGGGTTTCCTTCAACAACGTTACGAGTCATCAGAGGAGGAGCCTAGTGAATAAGTGTGAGTGTGAAGCTGTAGGCctggagacccaactgcacgctcagacctgcaAGCTCAGACCTGCACTTCTAGACCCATCGTTTTCTCAGACAGTACCACCTGCTGTTGGGTTGGGGGAGGCGACAGCGACGGAGgcccaactgcacgctcagaccaGCACTTTCTAGCAAGCAGCAACATCAAACATGTGCTGTTGTTTCAGTTTGCCTGCTGTATCGATTGTCTACACAGCAAATAAACAGAGCAGTATGCACTGAG
>TCONS_00069641
GTGAGACGGCCGTTGGTTTGGAAGGAGCAGATTCAAATTCCAGTGGAGCAACGGCAGAAATCCGAGGAAACATCATATTCGACGGGTTTCCTTCAACAACGTTACGAGTCATCAGAGGAGGAGCCTAGTGAATAAGTGTGAGTGTGAAGCTGTAGGCctggagacccaactgcacgctcagacctgcaAGCTCAGACCTGCACTTCTAGACCCATCGTTTTCTCAGACAGTACCACCTGCTGTTGGGTTGGGGGAGGCGACAGCGACGGAGgcccaactgcacgctcagaccaGCACTTTCTAGCAAGCAGCAACATCAAACATGTGCTGCTTGCCTCCTCTGTCCATTTTCCATCAGTCTACACAGCAAATAAGCAGAGCAGGTTGCACTGAGGTATGCAAGTACTGTACATTTTGACAGACAGTTAAAATGTTCATTGTAAATTTAGACCAAATcaatcaaacacagatttgaaacCACTTTAGCTATTGTTGGTATAAAGTTGTAAAATTACTTTCAAGATGGATTTACAAACACCAGAAACACAAGCTATTGACCATGCTCATgactttaataacatttaaacttTCTATTGTTTACCATATTCATGGCAAATTGTTGACTATTAAATGATACGGtaagaaaattaaacaataaatcactgtaaaaataaatatcctTCAGAACACCAAATTTAACAATAACAAGCACTCATTAAGCAAAAGACAGACTGGTCAAAGAAAcgtgaataatgaataaaaaaaatctagtaaatcaatac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000093180

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072158 False 781 lncRNA 0.44 5 13518522 13597892
TCONS_00069642 False 659 lncRNA 0.46 4 13518593 13551129
TCONS_00072159 False 408 lncRNA 0.51 3 13518755 13551129
TCONS_00069641 True 782 lncRNA 0.40 3 13518768 13555351

Neighbor

gene id symbol gene type direction distance location
XLOC_035497 fut9d coding upstream 13036 13503377 ~ 13505486 (+)
XLOC_035496 jak3 coding upstream 105925 13389115 ~ 13412597 (+)
XLOC_035495 slc5a5 coding upstream 136171 13364950 ~ 13382351 (+)
XLOC_035494 itgb4 coding upstream 358935 13106760 ~ 13159587 (+)
XLOC_035493 sap30bp coding upstream 420330 13064750 ~ 13098192 (+)
XLOC_035499 NA coding downstream 89212 13687104 ~ 13692006 (+)
XLOC_035500 pimr107 coding downstream 97058 13694950 ~ 13696012 (+)
XLOC_035501 lonrf1l coding downstream 102713 13700605 ~ 13788311 (+)
XLOC_035502 NA coding downstream 158121 13756013 ~ 13760915 (+)
XLOC_035503 NA coding downstream 197089 13794981 ~ 13799369 (+)
XLOC_035489 NA non-coding upstream 455384 12766030 ~ 13063138 (+)
XLOC_035486 CR933523.1 non-coding upstream 1658378 11860028 ~ 11860144 (+)
XLOC_035485 NA non-coding upstream 1706358 11794658 ~ 11812164 (+)
XLOC_035482 NA non-coding upstream 1945050 11567232 ~ 11573472 (+)
XLOC_035479 NA non-coding upstream 2198819 11319434 ~ 11319703 (+)
XLOC_035505 CT025854.1 non-coding downstream 373525 13971417 ~ 14020139 (+)
XLOC_035506 NA non-coding downstream 404185 14002077 ~ 14006807 (+)

Expression


Co-expression Network