XLOC_035888 (lrrc75ba)


Basic Information

Item Value
gene id XLOC_035888
gene name lrrc75ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 40080728 ~ 40163247 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070351
atttaaacagtgttgttttaaaattaaagtgaacGGATGAGTTCAACAAAAGTATAAGCAATCAAATAAAAACCTCAAAGCTCAGAACGGAAGTGTCTTCAAAGGGTTATCatcagtcatttttaaaacatctgttttcCTGAAGAGAAAATTAATTGGAGTTTTAACAGCATTCCACTGGAACAACTGTTTTACTATGCAAGCTCAACTCAAATTTACATTAAGGCGTATTAGCTTTTATTAGCTAGTCACAAAATTATTCTTAAAGACTTAAAAAATAGTAGTCTATTATTTGTAATGATAGGCTAATTCGAGTAAAATAATGAAGAAACCGTGTTCATTTGTCAGTATACAAATGTGCAGCAAAATTTTTTTCTACATGCAAATACATTTGCAAAAGCCACAATGTGCTTTGATTTATTTGCTGTTTAGCACCAAAAAACGCAACTTGCACATCTGTCAGTGCAATAACAGCTAAAAAGTACCAATTCGACGGTGTTGTTTTGACGGTTCTTTCTGGGCATGTGGGTCAGATACACAAGAAACCCCGGCAGCCAATAGCAGGACAGCCCTCGGTAATGATCCACGCGTGGTGCTGTGGAGAGAATCACCATCATCCTCATCCACTGAATATCAACTAGAGGCGGACGCGTCCTGCTGACAAACACAAGGACGATAAAGAGCAGAACACAGTCGTCTCCCCTGCTCGAACTACTACACATGTTTGTGTCGCTTGGAAAACCGAACAAAGGACACTCGCTGGCTGGAAGACCGAGTACGTGCTACTCAAGTTTGGACCGATGTGGAGCCCGCTGGGCGTTAGTATCATCCGGGCTGCCATGGTGACGCCGTGAGGGGTAAGAGCGTCGTATTTAGTGTAAAATTGTGCATTTTAGTGTTAATCAAAACCATGGGCTCCAGACTGAGCAGACAGAACAGTCTCGACAACGAGAATTTCTCGAGGAGGCGACGGAAGCATCTGGACAGCACTGGAGAGAGCGACCGCGGCGGAGACTTTTTGTTTACGTCGCTGATGCTCCGGTCGGATAAGCTGCCCGGGATGCTGAGGAGAAGCAACCACAGCCCGTATGTCCGGCGGGTCGCTTGGATCCGGGAGATGCAGAAGCTCCTCCGGGAGAGGAAGATAGAAGAGGCGACGGACGTGCTCAAACTGTTGAGGAAGGACCTGGGATTAGAGGGTACGTCACTCAATGATATCCTCTATAAGAACGCAGCTTTCCTAAACCTTGTGGACCCCATATCTCATGAGCTCCTGCTGAGCCTGGCCAGAGACATGCAGTGCCCAAAGAAGGACTTGGAGACGCTGAAGTCTTCGGATAAAATCTGCAGACAGCTCATCTACCACCTGACTCCGCACTCCAAGTGGCTCAGGAAAAGTATGACTCGTAGAAAGGCCCAGGCCTGtCTTAAAACAACCCTCCAGAAGAAGCTCTGCAGCGACTCAGTGGACCTCTCTGGCATCCCTTTATCAACTCGCGACATACGGCATGTGGCGTATTACCTCCAGACCAGTGGGGGCGCTGTGATATCCGTGGATCTTAGTTTCACTGAGCTCCGGGACGAGGGCCTACGTCTACTTCTGCCCTTCTTGGGTGCACTGCCCAAACTCACAACACTGGCTCTCAATGGGAACCGTCTGACCCTTGGCATccttaaagatctgtctgaagCCTTCAAAGAATCCAAGAGGTTCAGTTGTCTTGCTTGGATTGACCTGGGCAACAATGTGGACATATTTACCATGCCACAGCCTCTACTGGTGGCCCTGCGGCGACGCTGTAGCCTAAAGAGCAGTTTGCCCACCATCTACGAGTACACCGAGGGTCAGCCCTACTGCTACCGCATGGAGAGCTCCATTGAAGAACCCAGCCACTACGAAGAAGAAGAGGACGAAGACTACGACGAGGACCTGGAGCCGTGGAGCATTGGGGAACAGAAGAGCTCAGGTAGTTTCACCCTGCACCATTGTGAAAGGTGA
>TCONS_00070352
ATAAAGAGCAGAACACAGTCGTCTCCCCTGCTCGAACTACTACACATGTTTGTGTCGCTTGGAAAACCGAACAAAGGACACTCGCTGGCTGGAAGACCGAGTACGTGCTACTCAAGTTTGGACCGATGTGGAGCCCGCTGGGCGTTAGTATCATCCGGGCTGCCATGGTGACGCCGTGAGGGGTAAGAGCGTCGTATTTAGTGTAAAATTGTGCATTTTAGTGTTAATCAAAACCATGGGCTCCAGACTGAGCAGACAGAACAGTCTCGACAACGAGAATTTCTCGAGGAGGCGACGGAAGCATCTGGACAGCACTGGAGAGAGCGACCGCGGCGGAGACTTTTTGTTTACGTCGCTGATGCTCCGGTCGGATAAGCTGCCCGGGATGCTGAGGAGAAGCAACCACAGCCCGTATGTCCGGCGGGTCGCTTGGATCCGGGAGATGCAGAAGCTCCTCCGGGAGAGGAAGATAGAAGAGGCGACGGACGTGCTCAAACTGTTGAGGAAGGACCTGGGATTAGAGGGTACGTCACTCAATGATATCCTCTATAAGAACGCAGCTTTCCTAAACCTTGTGGACCCCATATCTCATGAGCTCCTGCTGAGCCTGGCCAGAGACATGCAGTGCCCAAAGAAGGACTTGGAGACGCTGAAGTCTTCGGATAAAATCTGCAGACAGCTCATCTACCACCTGACTCCGCACTCCAAGTGGCTCAGGAAAAGTATGACTCGTAGAAAGGCCCAGGCCTG

Function

symbol description
lrrc75ba Orthologous to human LRRC75B (leucine rich repeat containing 75B).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-225 Orthologous to human LRRC75B (leucine rich repeat containing 75B).

Ensembl:

ensembl_id ENSDARG00000074308

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070351 False 1999 mRNA 0.48 5 40080728 40163247
TCONS_00070352 True 750 mRNA 0.53 3 40081403 40119817

Neighbor

gene id symbol gene type direction distance location
XLOC_035887 ggt5a coding upstream 49717 39998467 ~ 40031011 (+)
XLOC_035886 NA coding upstream 236758 39830606 ~ 39843970 (+)
XLOC_035884 hnf1a coding upstream 263561 39802506 ~ 39817167 (+)
XLOC_035885 CT027598.1 coding upstream 274298 39806314 ~ 39806430 (+)
XLOC_035883 si:ch211-170d8.2 coding upstream 282586 39795918 ~ 39798142 (+)
XLOC_035889 rnf34a coding downstream 47151 40210398 ~ 40238509 (+)
XLOC_035890 orai1a coding downstream 112583 40275830 ~ 40288223 (+)
XLOC_035891 gck coding downstream 313564 40476811 ~ 40490593 (+)
XLOC_035892 CABZ01044746.1 coding downstream 339518 40502765 ~ 40526398 (+)
XLOC_035893 NA coding downstream 371749 40534996 ~ 40538212 (+)
XLOC_035875 CR533430.1 non-coding upstream 745185 39332416 ~ 39335543 (+)
XLOC_035874 NA non-coding upstream 843636 39235987 ~ 39237092 (+)
XLOC_035873 NA non-coding upstream 1021780 39056888 ~ 39058948 (+)
XLOC_035897 AL935142.1 non-coding downstream 769475 40932722 ~ 40932838 (+)
XLOC_035898 NA non-coding downstream 803281 40966528 ~ 40966788 (+)
XLOC_035902 CR382384.1 non-coding downstream 1171823 41335070 ~ 41335184 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G228544 NA non-coding CI01000053 null 5471332 ~ 5486136 (-)
striped catfish (Pangasianodon hypophthalmus) G218917 NA non-coding NC_047608.1 CM018554.1 2336752 ~ 2419491 (-)