G1682067 (srbd1)


Basic Information

Item Value
gene id G1682067
gene name srbd1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29042149 ~ 29043742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1924082
gttgtgtgtacctgtggttggtgggttgtgtgtacctgtggttggtgggttgtgtttacctgtggttggtgggttgtgtttacctgtggttggtgggttgtgtgtacctgtggttggtgggttgtgtgtacctgtggttggtgggttgtgtgtacctgtggttgtTGAGATGGTCTAGAGGGTTGATTCTGATGAAGCCGGCACATTGCTGGTAGCTCTTAGGGCCCAGGCCCTTCACCAGTCTCAGCTGATCTCTGTTCATGAAAGGCCCGTTCGTCTCCCTCCACTCTGCTATGCTCTTTGCACGCCCTATATTCAGACCTGCCACgtgtCTCATCAGGGTCTCTGAGCAGATGTTGATGTCCACTCCCACGAAGCTCACACACTCCTGCACCACCCCGTCCAGGGCTGCCTTCAGAGAGCTCTGGGACACATCGTGCTGGAAAGAGTGATGGCA

Function

symbol description
srbd1 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Orthologous to human SRBD1 (S1 RNA binding domain 1).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1924082 True 457 lncRNA 0.54 2 29042149 29043742

Neighbor

gene id symbol gene type direction distance location
LOC110499307 NA coding upstream 105497 28892178 ~ 28936652 (+)
six3a six3 coding upstream 189821 28849051 ~ 28852328 (+)
camkmt camkmt coding upstream 296568 28548493 ~ 28745581 (+)
slc3a1 slc3a1 coding upstream 507561 28525469 ~ 28534588 (+)
ppm1ba ppm1b coding upstream 517056 28478800 ~ 28525093 (+)
LOC110499309 prkce coding downstream 83997 29127739 ~ 29280630 (+)
LOC110499310 epas1 coding downstream 242143 29285885 ~ 29356101 (+)
trnaa-ugc-146 NA coding downstream 346578 29390320 ~ 29390393 (+)
ankrd1a LOC106589708 coding downstream 379952 29423694 ~ 29428859 (+)
lhcgr lhr coding downstream 393615 29437357 ~ 29458499 (+)
G1682008 NA non-coding upstream 85403 28956527 ~ 28956746 (+)
G1682005 NA non-coding upstream 88612 28953331 ~ 28953537 (+)
G1682002 NA non-coding upstream 90641 28951270 ~ 28951508 (+)
G1681914 NA non-coding upstream 157181 28884672 ~ 28884968 (+)
G1681897 NA non-coding upstream 166097 28875825 ~ 28876052 (+)
G1682072 NA non-coding downstream 3568 29047310 ~ 29050892 (+)
G1682118 NA non-coding downstream 66977 29110719 ~ 29111253 (+)
G1682122 NA non-coding downstream 71112 29114854 ~ 29115245 (+)
G1682128 NA non-coding downstream 78103 29121845 ~ 29122528 (+)
G1682164 NA non-coding downstream 143039 29186781 ~ 29188592 (+)
G1681792 NA other upstream 263740 28778006 ~ 28778409 (+)
G1681180 NA other upstream 315654 28717361 ~ 28726495 (+)
G1680230 NA other upstream 1666330 27375354 ~ 27375819 (+)
G1679823 NA other upstream 1954686 27084426 ~ 27087463 (+)
G1679135 NA other upstream 2266469 26700392 ~ 26775680 (+)
LOC110499316 LOC106589729 other downstream 528693 29572397 ~ 29588171 (+)
G1686317 LOC106589755 other downstream 3610612 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 4133551 33177293 ~ 33196167 (+)
G1687675 NA other downstream 5282095 34325837 ~ 34326254 (+)

Expression


Co-expression Network