XLOC_036030


Basic Information

Item Value
gene id XLOC_036030
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 50531703 ~ 50705652 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072291
ACAAACCAATGAGTTGGCGGCTAACAGAAGTGGCAACCAATCGCAGTGAAGAGTGGGCGGCTCCAATGCGTTTCCCTATTTAACTTTGAAACATAATATTAGCTTACTATTTTTAAGTCGACGGCTACAGACTAGTTCCCCGTCTGCAACTAAACGTTAATATCAGCAGGTTTGTCGAGAATTGCAGGGTCTctggaaaatgtatttattttacacgTCGATTCTGTGCGTCCTCTGCGCATGTCACATGACCAAAGCCACCTGTGACGAGCCTTTGACAGCAGAAGATGCTGAATTCTGCAAGTAAG
>TCONS_00070544
CAATGAGTTGGCGGCTAACAGAAGTGGCAACCAATCGCAGTGAAGAGTGGGCGGCTCCAATGCGTTTCCCTATTTAACTTTGAAACATAATATTAGCTTACTATTTTTAAGTCGACGGCTACAGACTAGTTCCCCGTCTGCAACTAAACGTTAATATCAGCAGGTTTGTCGAGAATTGCAGGGTCTctggaaaatgtatttattttacacgTCGATTCTGTGCGTCCTCTGCGCATGTCACATGACCAAAGCCACCTGTGACGAGCCTTTGACAGCAGAAGATGCTGAATTCTGCAAGGGAGGGTTAAAGGTGATTTATCCAGATCTGGTTGTTGACAAATGCTTAATCGTCCCTCAGAGGACGAGAGAGAAGATCAGTATGGAGTGGGGATCACCTGAAGTACTCCTGCCACATGCTGAGGAGGAGAAGAAATACACTCTAGTAATGGTAGATCCAGATGCCCCCAGTCGTCAGAATCCCTCTCGTTCTTACTGGAGACACTGGTTACTGGTTGACATCAAGGGTGAAGCACTTCAGACAGGAGACGTCAGAGGCACTGAACTGTCTGGTGAGTCTGAATATGCATATTTCACTGCTGCAATTGTACATCTGGAGTTAAACTAACCTTTAAACCTAAATATTAAACTCAGGATCTTTTAGGCTTATGTAGAAAGACCTTTCAAATAAAAGGCGAGAAGTCAGGTCCACATCGCAGTGTATTCTGGCCAAAAACCACCCACTCAGAGAAGAACAGCACCTCTGACTGACACataaaacagccaatcagagttgatttagtttttaatgCATCACTGATCAATATTTCAACAATGAACTGACAGgaaaaaatcattataaataagtTTGTGCAGCAACATTTCAATTCTGAGATCTGAGATAGAGTATCTTACTGATCAAGAGATAAGGTTAACTTCCAAAAAGATTTTATTCTAGTGCGACACACAGGCTAACCAGACACCAGGTTTTATCTTCTTTTACAGCTTCTTCATGACACCCAGCTCTCTTTAGAGAATTCCTCCAATGAGGATTAATATAAGGCACCCAGGATAATATACACTAATTAAATGCATATGGAAACCACCTTCTGAATGACccttttttaatatatgtttttgtaTCATCTTTTCTTTGGCAATTTTTTTAAAGCCCCTATtgtcattataaaataaa
>TCONS_00070545
TGAATACTGATGCATGGAGTGATATAAACAGCTTGACTTATTCCCTGTACCTCTACTTTTACTCTTTAGGGGAGGGTTAAAGGTGATTTATCCAGATCTGGTTGTTGACAAATGCTTAATCGTCCCTCAGAGGACGAGAGAGAAGATCAGTATGGAGTGGGGATCACCTGAAGTACTCCTGCCACATGCTGAGGAGGAGAAGAAATACACTCTAGTAATGGTAGATCCAGATGCCCCCAGTCGTCAGAATCCCTCTCGTTCTTACTGGAGACACTGGTTACTGGTTGACATCAAGGGTGAAGCACTTCAGACAGGAGACGTCAGAGGCACTGAACTGTCTGCATATGCCCGCCCTACTCCCCCTAAAGGCACTGGACTCCACCGCTACCAGATTCTTGTGTTTGAGCAGCCTGAAGGCCGGACACCTTTCCTTAATAGAGAGGAGAATCGCTCACGGGGTAACTGGGATCTGCAGGCATTTATTCAGAGGTTTGGTCTGTCTGGAGCGAAGGCTTCTCTTCAGTTCCTCACCCAAAACTACAAGgactaaaacagaaaaaaagaaaaaacacctcCAACCTGCAGCTAAGCCTCACTTCTgactatatttattatatatttattatttattatatatattcaaCTGTATTTCACCTCAGTGTTTAGGATATCAAACCCAAAAAAGatgatgttattttattatgttaaataaaaacgATATTCATA

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000107065

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072291 False 308 lncRNA 0.44 2 50531703 50532188
TCONS_00070544 False 1192 mRNA 0.40 5 50531709 50673406
TCONS_00070545 True 726 mRNA 0.43 5 50534948 50705652

Neighbor

gene id symbol gene type direction distance location
XLOC_036029 NA coding upstream 17670 50508918 ~ 50514033 (+)
XLOC_036028 rhobtb2a coding upstream 29460 50493095 ~ 50502243 (+)
XLOC_036027 NA coding upstream 258225 50256786 ~ 50273478 (+)
XLOC_036026 slc25a37 coding upstream 313788 50190742 ~ 50217915 (+)
XLOC_036025 entpd4 coding upstream 351477 50150834 ~ 50180226 (+)
XLOC_036031 egr3 coding downstream 21568 50727220 ~ 50733508 (+)
XLOC_036032 bin3 coding downstream 37323 50742975 ~ 50839564 (+)
XLOC_036033 b2ml coding downstream 236588 50942240 ~ 50950549 (+)
XLOC_036034 NA coding downstream 248124 50953776 ~ 50962889 (+)
XLOC_036035 CR855300.1 coding downstream 261154 50966806 ~ 50967999 (+)
XLOC_036024 NA non-coding upstream 489888 50038691 ~ 50041815 (+)
XLOC_036019 NA non-coding upstream 907989 49616496 ~ 49623714 (+)
XLOC_036016 BX537103.1 non-coding upstream 1151400 49378890 ~ 49380303 (+)
XLOC_036038 NA non-coding downstream 454954 51160606 ~ 51165849 (+)
XLOC_036039 NA non-coding downstream 876077 51581729 ~ 51586703 (+)
XLOC_036041 NA non-coding downstream 1069770 51775422 ~ 51778591 (+)
XLOC_036043 FQ790367.1 non-coding downstream 1456209 52161861 ~ 52162964 (+)

Expression


Co-expression Network