XLOC_036019


Basic Information

Item Value
gene id XLOC_036019
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 49616496 ~ 49623714 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072287
ATCCCCTTTTAAGGTGTACATATGTTcaatttaaaattaacaaaatattagGCTTTATATTAGGTACCTTCACTatgtaaagataaataaaataaattatattgaagtaaaataaaaacaaaacgagTGGACTTTACTTAAAACTTCAAGAAATGCCATAGTAACTTAAAAATGTTGACTTAacaaaatttgtattattatgcacacagttcatttacttaattttaagacAATAGCTTTACTCGTTAATTTATTAAGTCAGCTAATCGCATTTTATAGTTTTCAtatgtttaattttaaattaacaaaattttaaccgctttatattcattaaaataaaagaagaagaagagtacAAAGTCATTTTCCAAACCACTTTTGCTGCCTGTTGCAGTGGAATATGGGTATGTTCAGCAGTGTAATAGGcctactgtattttttaaatttaaatatcaataaatatcAATGAACATAATAGCGTGTCCTTGTTTTTGACTGGTAGTCTACACGGTAtgtgatttaaaacaaaaaacattgatgATATATCAgagaaaaaatgtatttacacgGACAAACACTGACTGAGTCACAACTTTATGCTCTATGTCGATGTTATATGTTGTAATGGTAATGTAATAATGAGACTGAACATCACACATAACATATACACTATCAAATATTTTCTCTGGTAAATGCTCTGTAAGATTTGCTGATATGCATATTTGTTTCATTTTCGTCTGTTTTTCTATCAGAAAATAAACAGCTCTTTAAAGATCCCTCGCGTACTGTACGTTCCtgagagcgccacctgctgtttcTACAGAGCTCGTCTGAGTGTGTGATGCATTGACAGAAGTGTGTCGTAGCCCTTTTGCTTTTACCTCAGCACCATCACATCACATCTGGTATTCGTTTAACTGGATTAGTTCATGCGGATGAGCTCAAAGCCTGtcaggaagaagaaaaaaaaaaatgctaatctaATCATctaatcattagcccctttcacacattaaCTAGCGTTAAAATACAACAGCAGCGGTTCATCCTTTCAAAGGGATCGTGACATAAGAAATCAAATTGGTCACTGGTCTTTGGGAATCAAAGCTTTGGTCTATTAAATCAtagcttaaaatggtttttacatGTCAACACTGTTAGCCTAGCATCCCCACTACCACTTCACCTTCTGTCAATATATCGACCGTCCTTTCAAAATGAAATGCCCAAAATAAATAGTGTTACTACATTATTTTACTACAATATAAAGCAAAGCACTTACTATTAGCATTAGCAATTAGCATTTAACTTTGTGTGAAGTCAaaattcattgtttattttgctagcccacattgttattctttaggtgaacaatacGTCTCTGCgagtgaaaataaatgtttggttAGATCTTCAACGCTATTTCACCACAATTTGTAAGTTTATGTTGATGGTGTTTGATGGTGTTGATGGTGTTTGGTGTTTGATCTAAACAGTAATTTACTGAATGTGTGAAAATACTATAAACCCTTTAAGTAGCTATTAGCTAacagtatgtgtgaaaggggctataagcttattgtaaaataaaaatagctattaGCTTgttgtgaataaataaaaaaaatttaagtcttCACAGGTTTTTCAGGTTTTAAAATAGGAcagttttaaagggacagttcacccaaaactgaatatcTCAGTCACAAACCTCcttgaatttagattttttttttctgtttaacacacacaaaaaaactgatttaaaaaaaaatgttggaaaccactaATCATTGAtttccaaagtatttgtttttcctactatggaagtcaatggttaccggtttctaacattcctaaaacctttttttatgagTGTTgaactgaaacaaaaaaaaaagaaactcataaaggtttagaaccacatGAAGTTCAGTAAACAACCATTACATTTGGGTGGATTTAATAATAGAATAGACTGCGCTAAACAAGTCATCAAAAGCAATGCTACACTGAGACCAAAGCACACTTCAACCGATATCTGATggataaaatcaataatgtgtgACTGAAACCCTGCACTGATACACCTTACAGAATCGATTAAAAATACTTTTcagaaatatattgaaaaatcCAATTGTACAAAATGAAACTGAAACGTTTgggccaacgcaatctcacggcaattcgtaactttttaatttagtagcttattcgtataaattcgtacgatctcattcatacaactgagtacgatttgctcaacccccaatgatggttgagtttaggggcggggtttggtgccacaaCTCATTTAAAATCCTATagttttgtacaactgaacttgtacgaattcttacgaattagccactaaactgacaacaAGTataatagttacgtttccttgtgagagcCAATTGTGCAAAATTAAACTTAAACGTTTGGGCCAACGCTatttcacagcaattcgtaactttttgatttagtagctattttgtataaattcgtacgatctcaATTGCACAATTTAGTAcagtttgctcatcccccaatgatggctgggtttagggagggggtttggtgccacgcctcctttttaaaatcatatattttgtacaactgaacttgtacgaattcgtacgtactagccactaaactgacaaaaagtaaaatagttattttttctCGTGAGAGCCAATTGTGCAAAATAAAACTTAAACGTGTGGGCCAACGCtctctcatggcaatttgtaactttttgatttagtagcttattcgtataaatttgtacaatctcattcgtacaatttattaCGATTTCCTCATCCCCAATGATGGCTGAGTTTAGGGGCGGgatttggtgccacgcctcctttttaaaattagatattttcgtacaactgaactcgtacgaattcatacgtattagccactaaactgaaaaaaaatgtaaaatagttatttCCTCGTGAGAGCAGGCTGTCTATAAACTAGCTCCTCTTTCATTGTTTAAATGCATGTGCTCAGTCTTTTCATTACTCCATAATAATACAGACAAACTTTCTGTATGTTCTTGAATAATGCGTAATCATCTGCATCTATGGCGTTTTGGTTATGTTTGTATGCACTATGTTGTGTGATTACAGTGATCAGTTTGTTCAAACATACAAGCACAGCCTGCTGTAACATCTGCTCATGACATCTGAAAATCTGAAGAAAAAAACGAAATCTGTTTTTCGTAGTTTGTGCTATTCTATATAAAAACGCAGCACagcattttaaggtaaattttcagtgataataaaaaatatttcacctCTACACCACCtacttttttttagtttaaataagattataacttagatttatttatttattttttttgctgaaaaataTAAGTAACTGTAAGCGtcacattaaaaaatgtataaaattttaaaaacagatattACGTTTTAGCTTGTATAGCTTGCCCTCGTTCTCATATCTagtctgtgtgtctatgtgtgtgtgtgtgtgttttaatacaGTGTTGTGAGGTCAGAATCTGTCATTGGATTTTTAAGAAAATAAGGTTTTGATTGAGGGAAGCGGGTCTGAGCTCCTTGTCCTGCCTGTGCATCTTCTACATTTTGACATCTGTTATTTGATCTGCATTGTAATGGAGGTGGATTGAGGCAAAGCATTTCGCACTGCAGGAAGAGGGTCCAAAATTAGCTTAAACTTGAATAAAACGAGTCTTTGGTGAGTAtgaggaattattattaaataaaatcaatggtAATATTCAGTGTCAAGTGATCCTTCAGAAAGCTTactaatatgtgaccctggactacaaagtatttttttttcatttaaacattatctttccattgatgtatgtgCTAGGATAAGACAATATTAGGCtgatttgaaaatctgaaatcaaATAATTCTTTAAAGTCTTTAAACTTGACTAAATTAAGCTGTTAGCACTGCACATTACaaatcaaaaattaagttttaattaaGTTTCACATTACTATCAATGGTGAACAGCTGTGAGAAAAGACTTTCATTTCAATACCCTAgactgtttaaaaatataaaaataacaaataaaaaagattaatctggtgtatatttatttatacaacagttctgtctggttcatgaatctgattggttgacagCCATGtgatattccaacacaatctcacggcaattcgtaactttttcatttagtggctaattcgtacattttagtacgatttgcatatcccccaatgacggttgggtttaggggtggggttaggtgccacgcctcctttttaaaatcgtacattttcttacgactgaactcgtacgaattcgtacgaattagccactaaactgccaaaacgtaaaatacttacgttttctcgtgagatcaggctggatattctgcaatatcagcaatcgtacagcctcctcacccttgtgtattactccgcccacgtAGTGACAGCGGATCAAttaactcactacagtttgacaaatattgcagctgttggacaacattatgtacttttaaggcttttttaggcctttagattgcaactatgcagcttatttataaggatagttcctttttttaaatacttataatttctaaaaattcaggccatcagcctgtcattaaGCAGAGCAAAACTGGTTgcaccacaagatggtgacagagacagtATAATACGTCCTTAGGGGAGGAAAAACTCAAACTACAactgttaaaattatttttaaacaggtaagtgacattctaagtcgatctctctcttttgtatgttgtagggctgtatttataccatagtaatctgctagtgtttgctttgctttggctttttctgggttGATTATTGAGATCTCCTGATtccaacagagaaatactgggaaatctctgtagactgatggcatttcatgctgttcagccttacaaacttaaaatgtgagcaaaatcacctgttttgtcataactgtagacattatgctagagaatcacttgaatactagctttaaagtcacgttggtgaattagcaacggtttctgctgttctgatgtcagctgcagatgtaaataaaTGGCGTAAGAAAGTAGCTCctcgtacaaaaggatttttcagactctccatgtttgattttctttttgtataCACAATTATGGCATTGAACTGTTGCATAAATGCAAtaacactcatagcagtgcaatatggctgtatatcgtcaatggtgggacactaaggcactcggcttgTGGCCTcgagccaatgcacgcctcccaccagtgccgatatacagccatatcgcactactactcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatacatacacacacacacatatatatatgtacacacatacatatatatatacacacacacacacacacacacacaaaataataaaaagaacattatatttattatttttaaaatagtatttaatttatttagtattaaataaacaaaaaattgtaTTCACTCACCACTAACAAGTTAATTTTGGACcctgactgattttttttatgtttatgaaaACGGGCAgatgaaatgaatgaaaagtaTAGAAAAGTCATACATAACCATAGTCGATGTTGAATTGTATGATGTATTTCAGAGCTGTGCTTTTTGTACACCCTTTTTCTGAACTCTACAGAGCTGAAGGTGCTGCAGTCCGGCATGAAAAGAAAAGCTACAGCTAAAACAACAGCCAGTCTCAATAACTGCTACAGCAACTTATCAGCATGAttctcaaagaaaaaaaagagaagaagatGTGAATGAATAACCCATGTAGGAGAGCAAACCTGTCCTTCTGGTTTCATTCCCATCCCTATTCATTCCCTGAAAGATGCTCCGTCATGATCTGGAGCTTGCAGAGGAACCAGCGGCGGAGCGGGCAGTAGTACTCGTAGTGAAACTGCTCAAACTCGGGCGTCTGCCGGATGTCGTGCAGGAAGGAGATGTCCAGATCTGACTCCAGCAGGACGAGGAGTAGCGGCAGCAGGATCATGAGGAGACCCGTGGCCATCAGCACTAGACGGGCAGCGCTGCGGAGGCATGCCTGCATCTGCTGGCGTCCCGATGACGGAGAGCAAAGCGACTGCCGAAAGGCCTCTCTTTCTGCCTCCCTCTGCCGCTCCGCCTGAAGCTCCCTCTGCATGTCCGGGTCGGCATGCAGCTCCTTCAGCAGACGTGCGGGGCTCTGAAACAGCAGCTCCAGGCCGCCCTGAGCCTCCTCCACCGGCGTGGGCACCAGGCTGGCACACGGGCTGTAGGCGGTGTCGGAGATGGTATGAGCGCCACCGCTGGTGTCATCTTCACTGTCCACGTGGATCTCTCTCCTGTCCTCGTCCACTCGGGTCCGCTGAGAGGCTTCATCTTCTCGTCTCTCCTGGCTGAAGTTTAGCATCTCCTCCATCTCGGCTTCTTCAGGAGTGACCGACGGCTTGAGTGGGGACAGGTGAACGCAGTCTTTCAGAGCTGAAAGTCCTGCAGAAGCAACAAGTGCTTGCGttaatcaatgaatcatttatttcgTTTAAGAATACTCTGCATTGTattaacttcaaa

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043167 ion binding molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072287 True 6686 lncRNA 0.37 2 49616496 49623714

Neighbor

gene id symbol gene type direction distance location
XLOC_036018 rasef coding upstream 10375 49570884 ~ 49606121 (+)
XLOC_036017 nfu1 coding upstream 168550 49433663 ~ 49447946 (+)
XLOC_036016 BX537103.1 coding upstream 236193 49378890 ~ 49380303 (+)
XLOC_036015 NA coding upstream 305680 49308636 ~ 49310816 (+)
XLOC_036014 NA coding upstream 385153 49222114 ~ 49231343 (+)
XLOC_036020 rmi1 coding downstream 142624 49766338 ~ 49769987 (+)
XLOC_036021 ntrk2a coding downstream 154772 49778486 ~ 49865375 (+)
XLOC_036022 naa35 coding downstream 312871 49936585 ~ 49969184 (+)
XLOC_036023 gfpt1 coding downstream 351446 49975160 ~ 50037559 (+)
XLOC_036024 NA coding downstream 414977 50038691 ~ 50041815 (+)
XLOC_036013 NA non-coding upstream 409027 49201312 ~ 49207469 (+)
XLOC_036008 NA non-coding upstream 552650 49061001 ~ 49063846 (+)
XLOC_036027 NA non-coding downstream 633072 50256786 ~ 50273478 (+)
XLOC_036029 NA non-coding downstream 885204 50508918 ~ 50514033 (+)
XLOC_036030 NA non-coding downstream 907989 50531703 ~ 50705652 (+)
XLOC_036035 CR855300.1 non-coding downstream 1343092 50966806 ~ 50967999 (+)

Expression


Co-expression Network