XLOC_036014


Basic Information

Item Value
gene id XLOC_036014
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 49222114 ~ 49231343 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072284
gcttgcgcttcacgtcgacgtgtagttacattgtttgagaggtgcgcatcagagGTGGGATATCCATACACGCGCAGGCTGTACTGGAGCATACTAGGCATGGGATAACCGTATACatcgatttggaaaagtcaaggttttaaaaccgtctctttttttctgcaataccgttcctaTGGTATGAGTAagatgtttagttttagtttttttttttttgggacaacagtatctccagcaaaaaagattaatttgtaaaaaagaaaaagaaattgacaAAAGAAGTGAACACTTCATTTAGCCTGACaagtttactgttccaaaatatcttaaatgtatctcaaaaaaaaatatattatgttcaaaggagaaaaaatataattttttacccagacatttaaaaagaaaatatattttagagcagtaatcataataccgtgaaaccgtgaatttttatccaaggttatcataccgtcagaatcttataccggccccaATTTTTAATCCCTAACCCCCAATCTCataaccattcaaatacagtgagggtagcataatctgatggtaAGGATAAAGTGTCAGGACACAGGCActccaaatgcagaagcaaaCTTTTTTCCAGTGGATTAACTCGTAGAGATTAATTGTACACCTcatttgcaaaataaacattgtccaTTTTAATTTCACACAGACTATAAGTGCTGGGTCAAACAGCACTTTTGTAGTGTTTTCGTTTGGattgattttaaaacaaaaaaaatttcccATATACTTTTGTAAGGttattaatagggtatatgctgagctagtgttgttcccatactaaTAAATTTCCGGTGACccgttattgtgattttttttccattttatacagtttcttatacagcatcgatgttgtaatgtctttaaaatacaatcagttaaataaactttggcattcatttagttaatcaagcgtaaaacgagacaaaaagccgtttactcgtactcgcccgtcagaatcggcaggctagcgcagaagctccattgaatatacaggggtaaaataaatgctcatataagACTTGCCGGggaataatgtaatttaatgcagtgcttcttgtacaatctgagacccactttatatcagatatcactcagccagtggagatcgctcatttttaaagaaaacagaccttaaacgcgtcgatttttgcaatggcatacaggtcaccggaagcgcttaaccaaggttactggcaaattaaaggtcctattagcatgctttagCATATACCCTATTACGTTATTTGTAagcaaatgaaaataataataaaataaaataaatgtaagttCACTGGAACAGTCAAAACAAAAACACcgcatgttttaatgcattggtCAAATCATTTTTCATGCAGGatatttgttaaatgtaatatgtaaaatgaaatgacagtTAAATCCGTTTTTCGAGTACTTTTAGAAacaaaagttcaacttttttgcATTAGAAATGTTCCTCGGCtcaataattagtaataataacgCCAGCACCCTGATCCTGAAAGTGATATTAGATTATATTTCATCACCTCTATTAAAATACTGGTAGACAGATGCACAGACGGTAAGATAGGGTCTGTGTTTATCATGAAAATATAACTCAAACTTTGTTCTTGATAGAGCAGCTGGTTTATCCAGAGAGTTGTTGATCTCCAGGTTTTAACAGTCATTCCCACACACATACAGCCAAACCAAAAATTAGTCAGACACTAGATATTATGAATTTTGGTTTGACTGTACGTCCCACTCTCAGGACAGTATGCAGTTCTTGTCCTTGTCTTTTTGGCCGAGACTCTgcgtcctcctcctccttctgaAGCTTCCCCTCTGGCTCTTCTCCTCATCCTCAGTCTGTCCTTCATCTGCTCTCTGTCCTGTCAGTTGGGGCGGCAGAGGAATGCGCTGGCCCAGAAAGAAGCCTTCCTCCTCTGAGTCTGAGGAAGAGGAGCAGGTGGAGCAGGAGTCCTCGTGTCTGGAGCGGCTGGAGTACAGGGTCAGGCTGGTGTTTCTGCTTCCATCCGCGTTGTTACTGGACCGCCGTCGTTCCACATCCAGAGTCTCCAGACGAGGCCTGTCGCTCCGTGAACCCCGCGATCGTCTGTAGCGCTTTTCTGAGGAATGGTGTCCTCCGCTCCCCCGCCGAAAATTGCAGTGGTACGACCCATCTGGAGGAAACATGAGCGTTTTGTggccaagCAGGTCCATTCGAGACGGTACTTGACTGCAAATGCGCAGCCTGTGTCCCAGACTCCCCTCCGCTTCCTCTCCATCTTCCTCCTGCTCGTCCTCATCTCTGTCTCGTCTCTGCATCTCCGGCTGGTCCTCGTCCTCCCACTCGTTCTCCTCCACTGAGTAGCTGCAGCTGATGGGCTCTCTGAAGCTGACTCTGGCTGTGCTGCTGCGTACCGGTGCTGCTGGCAGATCTTCAGCTTCAGTGACCGAGGCCAGAGGGTCCGGAGAATCAGAAGGGTCGAAAAACACAGGCGGCGGAGGAGGCGGGAAAGAGTCCGAGTCATTCAGATCGTCAAATGACGCAAGCTGAGAGGAAATGCCTATAACAGAGAGCGCAAATCCTTTACAGTTGACGTGCCTCTAGACGTGCAGCTTGGAGGGAAAGGGCCGAATTCAGCGTATCCATTGAGCTCCACTGTAAACTCCAGAGCGCTGTAAGGACCGTCTGCACTGGGAGTCTCTGATTGGTCCTTGCTGAGTGACCCTGCTCTGTCATTGGCTACAGGACAGAGCTGAGCGGAAGGAAGAGGGTGTGGTGTGCTTGTTCGTCCGTATGGGGGAGGGTCTCCATTCACTAGAGGAGGGAATGATGTGTGAAC

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0007059 chromosome segregation biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:0007080 mitotic metaphase plate congression biological_process
GO:0051301 cell division biological_process
GO:0051304 chromosome separation biological_process
GO:0051310 metaphase plate congression biological_process
GO:0008608 attachment of spindle microtubules to kinetochore biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000280 nuclear division biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0000794 condensed nuclear chromosome cellular_component
GO:0000796 condensin complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0098687 chromosomal region cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005657 replication fork cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0005694 chromosome cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072284 True 2873 lncRNA 0.43 3 49222114 49231343

Neighbor

gene id symbol gene type direction distance location
XLOC_036013 NA coding upstream 14645 49201312 ~ 49207469 (+)
XLOC_036012 snpha coding upstream 66929 49149907 ~ 49155185 (+)
XLOC_036011 rad21l1 coding upstream 81469 49117506 ~ 49140645 (+)
XLOC_036010 zgc:56525 coding upstream 106419 49092039 ~ 49115695 (+)
XLOC_036009 ddx51 coding upstream 132732 49065348 ~ 49089382 (+)
XLOC_036015 NA coding downstream 77293 49308636 ~ 49310816 (+)
XLOC_036016 BX537103.1 coding downstream 147547 49378890 ~ 49380303 (+)
XLOC_036017 nfu1 coding downstream 202320 49433663 ~ 49447946 (+)
XLOC_036018 rasef coding downstream 339541 49570884 ~ 49606121 (+)
XLOC_036019 NA coding downstream 385153 49616496 ~ 49623714 (+)
XLOC_036008 NA non-coding upstream 158268 49061001 ~ 49063846 (+)
XLOC_036005 NA non-coding upstream 311286 48910307 ~ 48910828 (+)
XLOC_036002 NA non-coding upstream 469838 48750253 ~ 48752276 (+)
XLOC_036001 NA non-coding upstream 475471 48731449 ~ 48746643 (+)
XLOC_036024 NA non-coding downstream 807348 50038691 ~ 50041815 (+)
XLOC_036027 NA non-coding downstream 1025443 50256786 ~ 50273478 (+)

Expression


Co-expression Network