XLOC_036012 (snpha)


Basic Information

Item Value
gene id XLOC_036012
gene name snpha
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 49149907 ~ 49155185 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070525
AGAGAGATCTCTCCTGAGGAATCCTTGTAATAATCCTTTAAAAGGTGTCCTTCTGCATCCATGTCCCTCCCAGCGACCCGCCGGCCATCTGCAGGATCCCGCAGaagGCCTGCAGCCCCGAGCGGCACTCGGCACACACACGGGGACTCGTCTGTGCGCAGCAGTTACTCAGCATCATCCTGCAAGTGCACAGAGAGCATTACTGTACCACGCTCCAACCCGGCCACACCgcgACGGCAGGCGAAGTATACAACCTGTGGTGAGAATCATGGCATTCGTCCTCCAGCTCCTGAGCAGTACCTCACGCCACTGCAGCAGAAGGAAGTGTGTATTCGGCATCTACGTGCACggctaaaagaaaatgtggaGAGGCTTCACGACCGAGACTCTGAGATCGAAGAGTTACGGATGCAGCTGACACGGATGCAGGAGGACTGGATCGAGGAGGAATGTCATCGCATAGAGGCCCAACTGGCCCTAAAAGAGGCTCGAATGGAGATCCGGCAGCTTCAGCACACCGTGGAAACAGTAAGGTCCAATCTGGGGCCTCATGAGACAGATCAACAGGACTGTAAGTCTGAAGGTTTTGGTAGGATAGGTCTACGATTAGGAGCATCCAGGTCATGTGGCTGCTCTCCGGCACACACTATGAGTCGCAGCGCCACCTTCAGCAGGCTGAGCAGTGATACGTCCTCTGGTGCTACAGATCGCAATGGAAACGTGCGTACTGATCGATACATTCCCCCCAACAGAGGGGCGATGACGCTACCAAGAGGCGATGGGCGCACTCATCTACTTCTGGAAGCAGCTCTACTTTCT

Function

symbol description
snpha Predicted to enable syntaxin-1 binding activity. Acts upstream of or within with a positive effect on maintenance of mitochondrion location. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000078485

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070525 True 819 mRNA 0.55 4 49149907 49155185

Neighbor

gene id symbol gene type direction distance location
XLOC_036011 rad21l1 coding upstream 9262 49117506 ~ 49140645 (+)
XLOC_036010 zgc:56525 coding upstream 34212 49092039 ~ 49115695 (+)
XLOC_036009 ddx51 coding upstream 60525 49065348 ~ 49089382 (+)
XLOC_036008 NA coding upstream 86061 49061001 ~ 49063846 (+)
XLOC_036007 aak1a coding upstream 105648 48965767 ~ 49044259 (+)
XLOC_036013 NA coding downstream 46127 49201312 ~ 49207469 (+)
XLOC_036014 NA coding downstream 66929 49222114 ~ 49231343 (+)
XLOC_036015 NA coding downstream 153451 49308636 ~ 49310816 (+)
XLOC_036016 BX537103.1 coding downstream 223705 49378890 ~ 49380303 (+)
XLOC_036017 nfu1 coding downstream 278478 49433663 ~ 49447946 (+)
XLOC_036005 NA non-coding upstream 239079 48910307 ~ 48910828 (+)
XLOC_036002 NA non-coding upstream 397631 48750253 ~ 48752276 (+)
XLOC_036001 NA non-coding upstream 403264 48731449 ~ 48746643 (+)
XLOC_036000 BX323876.1 non-coding upstream 456653 48691469 ~ 48693254 (+)
XLOC_036019 NA non-coding downstream 461311 49616496 ~ 49623714 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_05413540_05419241 NA coding CI01000050 null 5413510 ~ 5419241 (-)