XLOC_036017 (nfu1)


Basic Information

Item Value
gene id XLOC_036017
gene name nfu1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 49433663 ~ 49447946 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070527
CTTGGTGCCCTCACAAGCATGGCCGCCTACAGGAGCGTCGGATTTGGGAGGAATTTAGCTGCTGTTTTAAAAAGAACTTATCATGGAAGCGGGCTTATCAGACCTCCCGTCTATACAATGGGCAGAAGTCCAGTTCCTCAGCAAACAACCACTGTGTTTATCAGAAACATGTTCATTCAGACCCAAGACACTCCAAACCCAAACAGCCTGAAGTTTCTTCCAGGCCGTGCCGTGCTGGATTCAGGCACTATGGACTTCGCCGGACCCAGAGATGCTTTTTGTTCTCCATTAGCGAGGCAGCTGTTCAGGATTGATGGAGTCAAGAGTGTCTTCTTCGGCCCTGATTTCATAACCATCACCAAGACCAGTGGTGAAACAGAGTGGAAGGTGATCAAACCAGACGTGTTCGCAACCATCATGGACTTTTTCACTTCTGGACTTCCTGTTATCAATGAAGCAGATGCTCCACGTGCTGACACAGCTCCTTCAGAAGATGACGATGAGGTGGTGGCTATGATTAAAGAACTGCTGGACACGCGCATTAGACCCACGGTGCAGGAAGATGGCGGTGACGTGTTGTACCATGGTTTTGAGGATGGCATTGTGAAGCTGAAGCTGCAGGGCTCTTGCACCAGCTGTCCGAGCTCCATCATCACTCTGAAGAACGGCATCCAGAACATGCTGCAGTTTTACGTGCCCGAGGTGGAAGGAGTCGAGCAGGTGAAAGAAGAGGATGTGGAAGTTGCATAAATCCCTTCACTGTCCAATCAGGTTAAAGGAGCTTGAGTTTAGTGCTCTGTTACACAGCTACACTGCAGAAAATTGCTTTTCTTACTTTAAAGTTTCTTTCAATTTCTAGTGCATATATCTtatattcttaaattaagaagcattttctagacaagcaaaacatattgtgttgttttcagaaataataagtcaatattaagtgagcttttccttaaaacaagccgaataatctgccaatggggtaagcaaaataatcttgatttCACTTTGGAATAACATTATTCAGCTTACCCTACTTGcacattattttgcttgttttaaggaaaaactcacttcattttgacttattatttctaaaaaagcaatatttttttgcgtgtctagaaaatgcttcttgatttaagtattttttaaatatttggactacaaacaagacaatGTATTTTTTGCAATGTGTGCTAAAGGAGAAATCTGTGTGTTTTctcactcattcaaacacatttatTAGCCACAGGAATTATTATGGCATCAAGCCTACATTTTATAAGCATACATCTTTGGATAGACCGTATTCGGTCAGTGCTGTAACAAGGTTTTGGGTTCGTCACATACTATTTGTCTCAATGCACTGGTTAAATCAAAGCATGCAGTTTTGTgtatattatatgtaataaatgAAATCTTATATGCATTTACTCAGACATGTATGTAAATATTATTGCTTGAAATCAACCGGTTTCATGCTTAATAGATTCTCAGGAATCTTCATATTGTAGGtcactttttaattatttgaaaacttTAATAGAGATTGCATTTGCAAGACCAATCATCATTATTTCTCGTTTAATAGAATGATGgagtaaattaaaacaaatgaataaagatTATCAATTATTTG
>TCONS_00070528
AGCATGGCCGCCTACAGGAGCGTCGGATTTGGGAGGAATTTAGCTGCTGTTTTAAAAAGAACTTATCATGGAAGCGGGCTTATCAGACCTCCCGTCTATACAATGGGCAGAAGTCCAGTTCCTCAGCAAACAACCACTGTGTTTATCAGAAACATGTTCATTCAGACCCAAGACACTCCAAACCCAAACAGCCTGAAGTTTCTTCCAGGCCGTGCCGTGCTGGATTCAGGCACTATGGACTTCGCCGGACCCAGAGATGCTTTTTGTTCTCCATTAGCGAGGTAGAGTTCGTATTTTTACGTAGACTTGACATTTCTGGAGGATCTAATTGCTTAAAACTATCACTCATGTTTCATAATCAATTCATACTCtcatgtaatgtgttttatggtggtgtaatggatcacaaatctcacggtttggATCAGGTCATTTTTCAGATCAGCGAGAAAtcggaggagacaaatgtcatttgctttccatttattgcAAAAACATTACTGCAAGAAACTATTGACTTTAACAAACAGAGCcggtaattttaataaaaaataaaatcgagAAATAACCAACTGAATAAAAATTAGGGGGTGCACGGAATTGGACAAATCTAAcgttgcaatattttgttattctgcgatataaacttaccggccactttattaggtacaccttagtagtaccaggttggaccccttttgccttcaggactgccttaatccttcatggcgtagattcaacaagatactggaaatattcctcagagattttggtccatattggcatgatagcatcacgcagttgctgcagat
>TCONS_00070529
ATGGCCGCCTACAGGAGCGTCGGATTTGGGAGGAATTTAGCTGCTGTTTTAAAAAGAACTTATCATGGAAGCGGGCTTATCAGACCTCCCGTCTATACAATGGGCAGAAGTCCAGTTCCTCAGCAAACAACCACTGTGTTTATCAGAAACATGTTCATTCAGACCCAAGACACTCCAAACCCAAACAGCCTGAAGTTTCTTCCAGGCCGTGCCGTGCTGGATTCAGGCACTATGGACTTCGCCGGACCCAGAGATGCTTTTTGTTCTCCATTAGCGAGtagtatcgatgctgaaacgatatattatgctgcaaaacagttgcaggatgacactATTAGAAAAACACTACTcgaaagtACCAGTGGTGAAACAGAGTGGAAGGTGATCAAACCAGACGTGTTCGCAACCATCATGGACTTTTTCACTTCTGGACTTCCTGTTATCAATGAAGCAGATGCTCCACGTGCTGAC

Function

symbol description
nfu1 Predicted to enable 4 iron, 4 sulfur cluster binding activity and iron ion binding activity. Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 1. Orthologous to human NFU1 (NFU1 iron-sulfur cluster scaffold).

GO:

id name namespace
GO:0097428 protein maturation by iron-sulfur cluster transfer biological_process
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005739 mitochondrion cellular_component
GO:0005506 iron ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-050417-365 Predicted to enable 4 iron, 4 sulfur cluster binding activity and iron ion binding activity. Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 1. Orthologous to human NFU1 (NFU1 iron-sulfur cluster scaffold).

Ensembl:

ensembl_id ENSDARG00000068125

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070527 False 1651 mRNA 0.39 8 49433663 49447946
TCONS_00070528 False 812 lncRNA 0.41 3 49433678 49436753
TCONS_00070529 True 471 mRNA 0.46 8 49433681 49443290

Neighbor

gene id symbol gene type direction distance location
XLOC_036016 BX537103.1 coding upstream 53360 49378890 ~ 49380303 (+)
XLOC_036015 NA coding upstream 122847 49308636 ~ 49310816 (+)
XLOC_036014 NA coding upstream 202320 49222114 ~ 49231343 (+)
XLOC_036013 NA coding upstream 226194 49201312 ~ 49207469 (+)
XLOC_036012 snpha coding upstream 278478 49149907 ~ 49155185 (+)
XLOC_036018 rasef coding downstream 122938 49570884 ~ 49606121 (+)
XLOC_036019 NA coding downstream 168550 49616496 ~ 49623714 (+)
XLOC_036020 rmi1 coding downstream 318392 49766338 ~ 49769987 (+)
XLOC_036021 ntrk2a coding downstream 330540 49778486 ~ 49865375 (+)
XLOC_036022 naa35 coding downstream 488639 49936585 ~ 49969184 (+)
XLOC_036008 NA non-coding upstream 369817 49061001 ~ 49063846 (+)
XLOC_036024 NA non-coding downstream 590745 50038691 ~ 50041815 (+)
XLOC_036027 NA non-coding downstream 808840 50256786 ~ 50273478 (+)
XLOC_036029 NA non-coding downstream 1060972 50508918 ~ 50514033 (+)
XLOC_036030 NA non-coding downstream 1083757 50531703 ~ 50705652 (+)

Expression


Co-expression Network