XLOC_036008


Basic Information

Item Value
gene id XLOC_036008
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 49061001 ~ 49063846 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072282
ttttattgttaataataataggcatattgtaataataataatagtaaggtAAATTTTGATAAGGACCCGTTTCATTCACTATATCATCATCATATAACAATATATCATTATATTCATCATCATAACTGGACAATGAAGAATCAATTTGCCTTCATTTGAAATAATGCGTTAAAAAACTGAATGTATTGCAACTATAAATATTTTCAGATCTATTTTCTCATCAACTTTTTAGATTGAGCATATGCAGATGACGTTTTTGACAGATTTGCTGCAATTATTTCCCTCATCCCGTCATGTATGAATGTCAGTACAAATCAATTGTAGCTTAAAATATCCTAAAAGCAGCACCTGAGCTTGTGCACAGTGTTGATGGAAGTGTTTAATACGTACAATCCTATACAATGACTTTCATTTAGCACAAAGCTAATATAGCTGCTGCAGCTGGACATCAAATCCGATGGATGCTGGATTATATTGCACACAACTGTAATAAAATGTCACGTCGATTCTATTCAATGTTATATTTGTTTTCTAACTATCACTACACGCTGCACATTCCCTTTATTATGTTTCATAGGCGGCGCCAGCACCAAGATGCTGTTGTGTCACTAATATTTGTTATTAAAGGAACCGTTTTTTAGAAATAGTCTAGGTAAACACGTGtgtttaaccattttttaaatttattcataTAATCTCTGAGTcttgcaggagcacttttagcttagcttagcatagatcattgaatcggattagaccattagcatctcgctcaaacatttcaaaaaaagagttttaatatttttcctatttaaagcttgacttttctgttATTTACATCGGGTGCTCTCGGAAAATTAAAACTTGCTATTTTCAAGGTCTAAAGGTCTAACattcattctggcgtaataatcaattTTTGCTGGTGGTCTGATTTAAAGATGCTAAGCTAATAGTGCTGCCGCCAGAAATCGAGATCTACTAAGTGAATTAAACTCATTGACACTATAGGGAAGCCCtaaattatgtatttatgcattcctttaaatattatatatgctTACAAAGCAAACTCTAAATATGAAACACTTGCTGCACAAATAAAATGTCAGCACACCTGTGTTTCAATCTTGCTTTCTAACTATCACTACACACTGCTCATTCTCATCATTATGTTTCATAGGTGATGTTGTTATGTCAAGATGCTGTTATGTCACTAATATTTGTTATTAAAGGAACCCTTTTttagaaataggctcattttacatttCCTCCAGAGGTAAACCGTTCAGTTTTTGCATTTCTGAATCaattcagccgatctctgggcCTGtcgagagcacttttagcttagcttagcatagatcattgaatcagattagactattagcatctcgttcaaacatttaaaaaaacgtttcaatgtttttcctatttaaagcttgactttttctgttatttaaatcGTGTGCTGTCAGAAAATGCAATTTTGCTATTTTCTTGGTCAAAAGAGCTAGGATATACACTCATTCTAGCGTAATAATCTATCCTTGCTGGCTTTTCAGCAAGATGCTAATAATATGATCAGATTTAACGATGCTAAGCTAATAGTGCTCCCGTCAGACCCGAGATCCACTAGATGAATTAAACTCATTAACACTAGGTCcgtaaaattagcctattttaCACCAAAAAAGTCTAGTATTCCTTTAAATACAATATCTGCTTAAAACACAAACACCAAATATGAAACACTTTACTTTTGCTGCAAAAAAGGTAGCAACCTGTCTTCCTCCATTTGCCTCCAGCATTTCATCTCATAAGTATATGTGTACTGAGGCATTAAAGGTGTAAAAATACACAAGATACGAGTTTCTATTATATGAGGTGAATTTTAAGTGAGTGTATCCACGTTGCTCTTTTGTGGAAAGGCGTTTTATATGAGTGTGAGACTGCGGGGATTgttcatgtttttgttgttgtttgtttcatGTGGAAGCAGCCATGATTGTTTGGTGGCCTTGTGAATGAATCTCAAAGCACTTGTCTTTTGAAATACTTGAGTTATGCAAAACACTCACAGGTTTAGAATCTGTATGTAATAAATAGAACCTGTTTAAAAGATGTCATGGTAttgatttataatacatttttattatagtaaaatgCATGATAAGTATCGGC

Function

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0045184 establishment of protein localization biological_process
GO:0007005 mitochondrion organization biological_process
GO:0098930 axonal transport biological_process
GO:0044248 cellular catabolic process biological_process
GO:0015031 protein transport biological_process
GO:0071702 organic substance transport biological_process
GO:0090148 membrane fission biological_process
GO:0071705 nitrogen compound transport biological_process
GO:0042886 amide transport biological_process
GO:0033036 macromolecule localization biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0008104 protein localization biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0012505 endomembrane system cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko04020 Calcium signaling pathway
ko04810 Regulation of actin cytoskeleton
ko04911 Insulin secretion
ko04970 Salivary secretion
ko04971 Gastric acid secretion
ko04972 Pancreatic secretion
ko04725 Cholinergic synapse
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072282 True 2184 lncRNA 0.33 2 49061001 49063846

Neighbor

gene id symbol gene type direction distance location
XLOC_036007 aak1a coding upstream 16742 48965767 ~ 49044259 (+)
XLOC_036006 rer1 coding upstream 99596 48942470 ~ 48961405 (+)
XLOC_036004 tp73 coding upstream 125525 48848200 ~ 48935476 (+)
XLOC_036005 NA coding upstream 150173 48910307 ~ 48910828 (+)
XLOC_036003 tprg1l coding upstream 251265 48801402 ~ 48809736 (+)
XLOC_036009 ddx51 coding downstream 1502 49065348 ~ 49089382 (+)
XLOC_036010 zgc:56525 coding downstream 28193 49092039 ~ 49115695 (+)
XLOC_036011 rad21l1 coding downstream 53660 49117506 ~ 49140645 (+)
XLOC_036012 snpha coding downstream 86061 49149907 ~ 49155185 (+)
XLOC_036013 NA coding downstream 137466 49201312 ~ 49207469 (+)
XLOC_036002 NA non-coding upstream 308725 48750253 ~ 48752276 (+)
XLOC_036001 NA non-coding upstream 314358 48731449 ~ 48746643 (+)
XLOC_036000 BX323876.1 non-coding upstream 367747 48691469 ~ 48693254 (+)
XLOC_035995 BX649478.1 non-coding upstream 533455 48514551 ~ 48527546 (+)
XLOC_036014 NA non-coding downstream 158268 49222114 ~ 49231343 (+)
XLOC_036015 NA non-coding downstream 244790 49308636 ~ 49310816 (+)
XLOC_036016 BX537103.1 non-coding downstream 315044 49378890 ~ 49380303 (+)
XLOC_036019 NA non-coding downstream 552650 49616496 ~ 49623714 (+)

Expression


Co-expression Network